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LOCUS XM_044395506 5723 bp mRNA linear INV 09-DEC-2024 (Ptp10D), transcript variant X1, mRNA. ACCESSION XM_044395506 VERSION XM_044395506.2 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_044395506.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5723 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5723 /gene="Ptp10D" /note="Protein tyrosine phosphatase 10D; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108070134" CDS 646..5589 /gene="Ptp10D" /codon_start=1 /product="tyrosine-protein phosphatase 10D isoform X1" /protein_id="XP_044251441.1" /db_xref="GeneID:108070134" /translation="MLYQLSKATTRIRLKRQKAVPQHCWLWSLAFLAAFTLKDVRCAD LAISIPNNPGLDDGASYRLDYSPPFGYPEPNTTIASREIGDEIQFSRALPGTKYNFWL YYTNFTHHDWLTWTVTITTAPDPPSNLSVQVRSGKNAIILWSPPTQGSYTAFKIKVLG LSEASSSYNRTFQVNDNTFQHSVKELTPGATYQVQAYTIYDGKESVAYTSRNFTTSRR TRHKELLDIKILREPNTPGKFIVWFRNETTLLVLWQPPYPAGIYTHYKVSIEPPDAND SVLYVEKEGEPPGPAQAAFKGLVPGRAYNISVQTMSEDEISLPTTAQYRTVPLRPLNV TFDRDFITSNSFRVLWEAPKGVSEFDKYQVSVATTRRQSTVPRSNEPVAFFDFRDIAE PGKTFNVIVKTVSGKVTSWPATGDVTLRPLPVRNLRSINDDKTNTMVITWEADPASTQ DEYRIVYHELETFNGDTSTLTTDRTRFTLESLLPGRNYSLSVQAVSKKMESNETSIFV VTRPSSPIIEDLKSIRMGLNISWKSDVNSKQEQYEVLYSRNGTSDLRTQKTKESRLVI KNLQPGAGYELKVFAVSHDLRSEPHAYFQAVYPNPPRNMTIETVRSNSVLVHWSPPES GEFTEYSIRYRTDSEQQWVRLPSVRSTEADITDMTKGEKYTIQVNTVSFGVESPVPQE VNTTVPPNPVSNIIQLVDSRNITLEWPKPEGRVESYILKWWPSDNPGRVQTKNVSENK SADDLSTVRVLIGELMPGVQYKFDIQTTSYGILSGITSLYPRTMPLIQSDVVVANGEK EDERDTITLSYTPTPQSSSKFDIYRFSLGDAEIRDKEKLANDTDRKVTFTGLVPGRLY NITVWTVSGGVASLPIQRQDRLYPEPITQLHATNITDTEISLRWDLPKGEYNDFDIAY LTADNLLAQNMTIRNEITISDLRPHRNYTFTVVVRSGTESSVLRSSSPLSASFTTNEA VPGRVERFHPTDVQPSEINFEWSLPSSEANGVIRQFSIAYTNINNLTDAGMQDFESEE AFGVIKNLKPGETYVFKIQAKTAIGFGPEREYRQTMPILAPPRPATQVVPTEVYRSSS TIQIRFRKNYFSDQNGQVRMYTIIVAEDDAKNASGLEMPSWLDVQSYSVWLPYQAIDP YYPFENQSVEDFTIGTENCDNHKIGYCNGPLKSGTTYRVKVRAFTGADKFTDTAYSFP IQTDQDNTSLIVAITVPLTIILVLLVTLLFYKRRRNNCRKTTKDSRANDNMSLPDSVI EQNRPILIKNFAEHYRLMSADSDFRFSEEFEELKHVGRDQPCTFADLPCNRPKNRFTN ILPYDHSRFKLQPVDDDEGSDYINANYVPGHNSPREFIVTQGPLHSTRDDFWRMCWES NSRAIVMLTRCFEKGREKCDQYWPNDTVPVFYGDIKVQILNDSHYADWVMTEFMLCRG SEQRILRHFHFTTWPDFGVPNPPQTLVRFVRAFRDRIGAEQRPIVVHCSAGVGRSGTF ITLDRILQQINTSDYVDIFGIVYAMRKERVWMVQTEQQYICIHQCLLAVLEGKENIVG PAREMHDNEGYEGQQVQLDENGDVVATIEGHLSHHDLQQAEAEAIDDENAAILHDDQQ PLTSSFTGHHNHMPPTTSMSSFVGAGGGINNVEAPDR" misc_feature order(1012..1014,1207..1209,1252..1254) /gene="Ptp10D" /note="Interdomain contacts [active]" /db_xref="CDD:238020" misc_feature 1015..1260 /gene="Ptp10D" /note="Fibronectin type III domain; Region: fn3; pfam00041" /db_xref="CDD:394996" misc_feature order(1255..1260,1264..1269) /gene="Ptp10D" /note="Cytokine receptor motif [active]" /db_xref="CDD:238020" misc_feature order(1342..1344,1543..1545,1588..1590) /gene="Ptp10D" /note="Interdomain contacts [active]" /db_xref="CDD:238020" misc_feature 1351..1605 /gene="Ptp10D" /note="Fibronectin type III domain; Region: fn3; pfam00041" /db_xref="CDD:394996" misc_feature 1525..>2895 /gene="Ptp10D" /note="Fibronectin type 3 domain [General function prediction only]; Region: FN3; COG3401" /db_xref="CDD:442628" misc_feature order(1591..1596,1600..1605) /gene="Ptp10D" /note="Cytokine receptor motif [active]" /db_xref="CDD:238020" misc_feature <2347..3483 /gene="Ptp10D" /note="Fibronectin type 3 domain [General function prediction only]; Region: FN3; COG3401" /db_xref="CDD:442628" misc_feature order(3565..3567,3763..3765,3808..3810) /gene="Ptp10D" /note="Interdomain contacts [active]" /db_xref="CDD:238020" misc_feature 3568..3822 /gene="Ptp10D" /note="Fibronectin type III domain; Region: fn3; pfam00041" /db_xref="CDD:394996" misc_feature 3940..4254 /gene="Ptp10D" /note="TM proximal of protein tyrosine phosphatase, receptor type J; Region: PTP_tm; pfam18861" /db_xref="CDD:465889" misc_feature 4594..5259 /gene="Ptp10D" /note="catalytic domain of R3 subfamily receptor-type tyrosine-protein phosphatases and similar proteins; Region: R3-PTPc; cd14548" /db_xref="CDD:350396" ORIGIN 1 aaaaagtgca tttctggccg acgggtttgt tgctgggttt gggggttcca attcgaattc 61 ggaacgggcg aagacgagac aaaacggtgc gcccgcaaac gctcgaaaac gcaaaatttt 121 gtcggtgtcc gttccgcttt ttctgcgtct gtgtctccgt cgcgtgtgcg tgcgcgcgtg 181 tctgtgttcg ttttttgtta ttttttttaa accaacgaca acacataata ttattaaaat 241 acacaaaaat ttcggtgatt atatttaaat gattttgttt tggtggcgtt ttgaatgaga 301 aaagctgaga ggcgcagtgg aaaacatcac aaataaaatg ttttaatcaa ttaaacaaaa 361 aaaaaaaaaa caacaacaaa atttcaacta attggatcca gaagaaaata caaaattcaa 421 tcgcgctgac gacaaataat tgtgaaaaca atgcatttaa ttaaagtaaa gactaaactc 481 gcgctgaaaa tgcccgaaat caaaagaaac tagcgagaaa cacaatcaaa aaatcgcaca 541 acaaatcgca aaagttaaca aaaaatccaa ataaattaag ccagacaaca aaagagagcc 601 aggagcagag aacgacagcg aaaacagcaa aacgacggcc ccaaaatgtt gtaccagcta 661 agtaaagcca ctactagaat ccgactcaaa aggcaaaaag ccgttccaca acattgctgg 721 ctctggagtt tagcatttct ggcagcattt actctaaagg acgttcgatg tgcagatcta 781 gccataagca tacccaacaa tcccggcctg gacgatgggg cctcctatcg gttggactac 841 agtccgccct tcggctatcc ggagcccaac acgacgattg cctcccggga aatcggcgat 901 gagatccaat tctcacgcgc cctgcccggc accaaataca acttctggct gtactacacg 961 aacttcacgc accacgattg gctcacctgg acggtgacga taacaacagc tcccgatccg 1021 ccgtcgaacc tctctgtcca ggtgcggagc ggcaagaacg ccatcatcct gtggtccccg 1081 cccacccagg gcagctacac ggccttcaag atcaaggtgc tgggcctgtc ggaggcctcg 1141 agcagctaca accgcacctt ccaggtcaac gacaacacat tccagcacag cgtcaaggag 1201 ctgaccccgg gagccaccta ccaggtgcag gcctatacca tctacgatgg caaggagtcg 1261 gtggcctaca ccagtcgcaa tttcaccaca agtcgaagga cgcggcataa agaattgctg 1321 gacattaaga tcctaagaga gcccaacact ccggggaaat tcatcgtctg gttccgtaat 1381 gagacgacgc tgctggtcct gtggcaaccg ccgtatccgg cgggcattta cacgcactac 1441 aaggtgtcca tcgagccgcc ggacgccaac gacagtgttc tgtatgtgga gaaggagggc 1501 gagccgcccg gtccggcgca ggcggccttc aagggtctgg tgcccggcag ggcctacaat 1561 atatccgtgc agacgatgtc cgaggacgag atctcgctgc cgacgacggc acaatatcga 1621 acggtgccgc tgcgaccctt gaacgtgacc ttcgataggg atttcatcac ctccaattcg 1681 ttccgggtgc tttgggaggc gcccaagggc gtctccgagt tcgacaaata tcaggtttcg 1741 gtggccacca cccgcaggca gtccaccgtg ccgcggagca acgagccggt ggccttcttc 1801 gactttcgcg acatcgccga gccgggcaag acgttcaatg tgatcgtgaa gacggtctcc 1861 ggcaaggtca cctcgtggcc agccaccggc gatgtgaccc tgcgacccct gcccgttcgc 1921 aacctgagga gcatcaacga tgacaagact aacaccatgg tcatcacctg ggaggcggat 1981 ccggcgagca cgcaggatga gtaccgcata gtctaccatg agttggagac attcaatgga 2041 gacaccagca ccctgaccac agaccgaact cgattcacgc tggagagcct tctgccgggc 2101 cgcaactact cgctatccgt gcaggcggtc tccaagaaga tggaatcgaa cgagaccagc 2161 atcttcgtgg tcacccgccc ctcgtcgccc atcatcgagg acctgaagag catacggatg 2221 ggcctgaata tcagttggaa gagcgacgtg aactcgaaac aggagcaata cgaggtgttg 2281 tactcacgca acggaaccag cgatttgcgc acccagaaga ccaaggaatc gcgactggtg 2341 atcaagaatc tgcagccggg agctggatat gaactgaagg tctttgcggt tagccacgat 2401 ttgcgaagtg aaccgcatgc ctacttccag gcagtttatc ccaatccgcc acgcaacatg 2461 accatcgaga cggtgcgcag caactcggtt ctggtccact ggtcgccgcc ggaaagcggt 2521 gagttcaccg aatactcgat tcgctatcga acggacagcg aacagcaatg ggtgcgcctg 2581 cccagcgtcc gatcgacgga ggcggacatc accgatatga ccaagggcga gaagtacacc 2641 atccaggtga acacggtgag ctttggcgtc gagagtcccg tgccgcagga ggtgaacacg 2701 acggtgccgc cgaatccggt gtcgaatatc attcagctag ttgactcacg gaacatcacg 2761 ttggagtggc ccaagccgga gggtcgggtg gagtcgtaca tccttaagtg gtggcccagc 2821 gataatcccg gtcgtgtgca gaccaagaat gtctccgaga acaagtcggc cgacgatttg 2881 tcgacggtga gagtgctgat cggcgaactg atgcccgggg tgcagtacaa gttcgacatc 2941 cagacgacct cctatggcat cctgtcgggc atcaccagcc tctatccgcg caccatgccg 3001 ctcatccagt cggacgtggt ggtggccaat ggcgagaagg aggacgagcg ggacacgatc 3061 accctgagct acacgcccac gccgcagtcg tcgtccaagt tcgatatcta ccgcttctcc 3121 ctgggcgacg ccgagatccg ggacaaggag aagctggcca acgacacgga tcgcaaggtg 3181 accttcacgg gtctggtgcc cggacgtctg tacaacatca ccgtgtggac ggtcagcggc 3241 ggagtggcca gcctgccgat tcagcgccag gatcgcctct atccggagcc cattacccag 3301 ctgcatgcca cgaatatcac ggatacggag atctcactgc gctgggatct gccgaagggc 3361 gagtacaatg actttgatat tgcctacctg acagcggaca atttgttggc ccagaacatg 3421 accatccgga atgagataac catcagcgat ctgcgacccc acaggaacta caccttcacc 3481 gtggtcgttc gttccggcac cgaatcctcg gttctccgga gcagctcacc cctgtcggcc 3541 agcttcacca caaacgaggc ggttccgggt cgagtggagc gtttccatcc caccgatgtt 3601 cagcccagcg agattaattt cgagtggtcg ctgccctcca gtgaggcgaa tggcgtgatt 3661 cgccaattct cgatagccta tacgaatatc aacaatctca cggacgccgg aatgcaggac 3721 tttgagtcgg aggaggcgtt tggggtgatc aaaaacctga agcccggcga aacgtatgtg 3781 ttcaagattc aggccaaaac ggccatcggt tttggaccgg agcgggaata tcgacagacg 3841 atgccgatat tggcgccacc acgtcccgcc acccaggtgg tgcccaccga ggtctatcgc 3901 agctcgtcga ccatccagat tcgcttccgg aagaactact tctccgatca gaacggccag 3961 gtgcgcatgt acacgatcat tgtggcggag gacgatgcca agaatgcctc cggcctggag 4021 atgcccagct ggctggacgt gcagtcgtat agcgtctggc tgccctacca ggccatcgat 4081 ccgtactatc cgttcgagaa ccagtcggtg gaggacttta ccatcggcac cgagaactgt 4141 gacaaccaca agattggcta ctgcaacgga ccactgaagt cgggcaccac ctaccgcgtg 4201 aaggtgcgag cgttcaccgg agcggacaag ttcacggaca ccgcctacag ttttcccatt 4261 cagacggatc aagacaacac ctccctgatc gtggccatca cagtgccgct gaccatcatc 4321 ctggtgctcc tggtcaccct gctgttctac aagcggcgac gcaacaattg ccgcaagacc 4381 accaaggatt cgcgggccaa tgacaatatg tcgctgccgg acagtgtgat cgagcagaat 4441 cgcccgatac tgatcaagaa ctttgcggag cactaccgcc tgatgtccgc cgactcggac 4501 ttccgtttca gcgaggagtt cgaggagctg aagcacgtgg gccgcgatca gccgtgcacc 4561 tttgccgacc tgccctgcaa tcggccgaag aaccggttca ccaacatcct gccctacgac 4621 cactcgcgct tcaagctcca gcctgtggac gatgacgagg gcagcgacta catcaatgcc 4681 aactatgtgc ccgggcacaa ttcgccgcgg gagttcatcg tcacccaggg accgctgcac 4741 tcgacgcgcg acgacttctg gcggatgtgc tgggagagca actcgcgggc catcgtcatg 4801 ctgacccggt gcttcgagaa gggacgcgag aagtgcgacc agtactggcc caatgacacg 4861 gtgcccgtct tctacggcga catcaaggtg cagattctca acgacagcca ctacgccgac 4921 tgggtgatga ccgagtttat gctgtgcagg ggcagcgaac agcgcatcct gcggcacttc 4981 catttcacca cctggccgga ctttggggtg cccaatccgc cgcagaccct cgtccgcttc 5041 gtgcgcgcct tccgcgatcg catcggggcc gagcagcgac ccattgtggt ccactgcagc 5101 gccggagtgg gaaggtcggg caccttcatc actttggatc gcatcctgca gcagattaac 5161 acgtccgact atgtggacat cttcggcata gtgtatgcca tgcgcaagga gcgcgtttgg 5221 atggtgcaga cggagcagca gtacatctgc atccaccagt gcctgctggc ggtgctcgag 5281 ggcaaggaga acatcgtggg tcccgctcgc gagatgcacg acaacgaggg ctacgaaggc 5341 caacaagtgc agctggacga gaacggcgat gtggtggcca ccatcgaggg tcatttgtcg 5401 caccacgacc tccagcaggc cgaggcggag gccattgacg atgagaatgc ggcgatactg 5461 cacgatgacc agcagccgct gaccagtagc ttcactggcc accacaatca catgccgccc 5521 accacatcga tgagctcctt cgttggcgca gggggcggca ttaacaatgt ggaagcgccg 5581 gatagatgac attcggttgt caaccagagt gataacaaca attcggtggt tatcgtcctg 5641 gttgacaaca agcccagctc gatgatctgc aaggacagca agggcggcaa catcgatgtc 5701 ctggagcaac agcagcagca gct