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LOCUS XM_044395423 8139 bp mRNA linear INV 09-DEC-2024 (fs(1)h), transcript variant X9, mRNA. ACCESSION XM_044395423 VERSION XM_044395423.2 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_044395423.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8139 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..8139 /gene="fs(1)h" /note="female sterile (1) homeotic; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108055736" CDS 1186..7386 /gene="fs(1)h" /codon_start=1 /product="homeotic protein female sterile isoform X4" /protein_id="XP_044251358.1" /db_xref="GeneID:108055736" /translation="MSSSEPPPRYEPPVEPVNGIVQPPVMPPAERPGRNTNQLQYLIK TVMKVIWKHHFSWPFQQPVDAKKLNLPDYHKIIKQPMDMGTIKKRLENNYYWSAKETI HDFNTMFNNCYVYNKPGEDVVVMAQTLEKVFLQKIESMPKEELELEPVTAKGGKKKQR APATPKSSSTPGGGGASTGGGSGTASSAAVSSGAGSGSAKVSAAASSAQQSGLQGATA GVGGGAASTAGTQAGSGGAGGATAARPVSAMGGTVSSTAGGAPSIPPISTMPPHTVPG STNTTTTAMAGGAGGGAGAAAANPNAAALMASLLNAGQTGGYPGAPGQTAVNSSSLLD GSTAAVAAAAAAAAAAAAAAGAGGAAGSAGGAAGAGVTIPAVNVNAANAVQAYVNAGV SVGVDAVIPPQQPAKIKKGVKRKADTTTPTANAFESPYAQMDSKSAKIATRRESNRQV IGKKGSGYNMSPLGVSGVPGLGGLVAGGVAGVAVAKNKEKLSDALKSCNEILKELFSK KHSGYAWPFYKPVDAEMLGLHDYHDIIKKPMDLGTVKRKMDNREYKSAPEFAADVRLI FTNCYKYNPPDHDVVAMGRKLQDVFEMRYANIPDEPVANAAHHHGHGHGHGHGHAHSH GHGHGHGHGHGYGGSSSLKHDASDSSSEDSSDTENESNSDEERSAKLKMLESKLLGLQ EEIRKLSEEASAKKKAKKKLKEKKKSMGGGSGSGSASHHGHASGGGANAGGAGANSGG HAGGVSVPGGGVGGLGAGGAGGANLSALLSGSLVGPGGAAVAGGVPNVGALHSQVHDV AMAFGQLAGGGASAGGGGFGAGVTASGASAGGKAGTLAGALAAGAAAGAGGTTGSGSG SSKGAKSKGGRGAKGSGGGGGVGGSNNAAAANSAGGAAGAAAGGAGAVGAVGGAGAAG GGGNASKRAKGSSSAGAGGAVGGANASTGGAGARGSSKKKPSQVMNFDSEEEDTAKPM SYDEKRQLSLDINKLPGDKLGRVVHIIQNREPSLRDSNPDEIEIDFETLKPSTLRELE SYVASCLRKKTHKKPSGKSKDEQMAEKKQELEKRLQDVTGQLGASKKTAKKDESASNK VEAVQPANPVSSSSSSSDSSSSSSSDSSSSDSSDSEAGDGDERPPRKKKSRDSNGSNV NNPSINVVLGGNHPSGALTPTTLLMGLDHVVNSNTPTSQISNLLGNANPLTAAAMLNN NNKTSLPGSNFGGAPTPGAGGNMLHAGGGGAAVSAATGQQQQQQQHNKNGPNDLSKVP PGGSITAALPPHSFGGAGGGGGAAGAAAIVGGNQSSGGIRIASNLHKPSGLGGGGGGG DLGEHHAALAAALTSGVNSTGTAGNNNGGSSNNNTNPLGGSHGDAMANASLASGLKQI PQFDDPVEQSLASLEFSAGSTGKSSLTDNFLIQQHLMQPAGPQQQQQQQQQQPFGHQQ QQQQQHMDYVTELLTKGAENVGGMNGNHLLNFNLDMAAAYQQKHPQQQQQQQQQQQAH NNGFNVADFGMAGFDGLNMTAATAFLDLEHTLQQQQMQQMQLQQQQHQQQQQQTHQQQ QQLSQQQLQQQQQQLTQQQQLQQQQQQFQQQHQQQLHQQQQQQQVANKLLIIPKPIES MMPSPPDKQQSQQHQKVLPPQQSPSDMKLHPSQAAAAAAQGKLAQAFKAANEQNLKNA SSWSSLASANSPQSHTSSSSSSSKAKPAMDSFQQFRNKAKERDRLKLLEAAEKEKKNQ KEAAEKEQQRKHHKSSSSSSSSSSAAAAQAAAVAAATAAAAAAALGAAAAAAVASNAS NASGGSSSGGGGGGESRSQAISGERERDRDRERERERSGSGGGQSGNGNNSSNSANSN GPGSAGSGGSGGGGGGSGPASAGGPNSGGGGNANSNSGGGPALLNAGSNSNSGVGSGG AASSNSNSSVGGIVGSGGPGSNSQGSSGGGGGGGGPASGGMGGGALDYGQQVAVLTQV AAHAQAQHVAAAVAAQAILAASPLGAMESGRKSVHDAQPQISRVDDIKASPGGQGQSS PAQQSPQDRAAAKRAEQRRAEQERRRREALAGQIDMNMQSDLMAAFEETL" misc_feature 1285..1605 /gene="fs(1)h" /note="Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino...; Region: Bromo_Brdt_I_like; cd05497" /db_xref="CDD:99929" misc_feature order(1372..1374,1393..1395,1402..1404,1519..1521, 1531..1533,1549..1551) /gene="fs(1)h" /note="acetyllysine binding site [active]" /db_xref="CDD:99929" misc_feature 2668..2970 /gene="fs(1)h" /note="Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino...; Region: Bromo_Brdt_II_like; cd05498" /db_xref="CDD:99930" misc_feature order(2746..2748,2767..2769,2776..2778,2893..2895, 2905..2907,2923..2925) /gene="fs(1)h" /note="acetyllysine binding site [active]" /db_xref="CDD:99930" misc_feature 4096..4290 /gene="fs(1)h" /note="Bromodomain extra-terminal - transcription regulation; Region: BET; pfam17035" /db_xref="CDD:435704" misc_feature <7321..7383 /gene="fs(1)h" /note="C-terminal domain of bromodomain protein 4; Region: BRD4_CDT; pfam17105" /db_xref="CDD:465349" polyA_site 8139 /gene="fs(1)h" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ctcgtgcccg tcggccgtcc atgtgtgcgt gtgtattcgc attttcagta atttcgaaaa 61 aaaattttgt atatttgatg gcgacagcga ctgttactca caagaaactc gcgcgtttgt 121 cgaaaaatcg tagcgcgtac gtatatatcg gtgtgtagaa attactaaaa attatgttgc 181 aactttttaa cagtcgtgta caatctgcat gttgtatatg ttcaatttaa atacaacaac 241 aatagcaaca acgcaaacgc aacacagttt taagcaacaa caaacaaaca acaaccaaac 301 cgacaagcta aacttggcta aagcaacaac aagcagcaca cccaacaaca aaagcaacaa 361 caaacaccac cagcagtagc agcgcggcca taaacaaaag tcaaaatcaa aaaacattcg 421 gatatattcg gatattatcg cccataaacg gataaggtgc aacagaacgt gtggatttca 481 ctaaagataa ctaggaaaat agaggaaatc cgaaggaaat atttacagcc agtcgcctgc 541 tggaatattg cgactaatag cgaaggattc aaagccacaa tgcctctggt agcagtcgtt 601 gttgtaccat ccttggccct cggatcagct aaagccagtc gattccaatg agaggagcct 661 gggccctgag aatctggagc aggcgagtgc acagacattg ctgagcatga agcatcatac 721 actacggacc actacacagc attatccctt gaacaagaag agatttctat cagaaagcag 781 aaaggcacca ggagcaacag gatcaggcgg aggatcacca ggagtaggag tcgtcgcagg 841 agtcgcagga acagccggag aagaaggcgc agccagtcgc aggaggagga ggtggtcacc 901 ggccacataa gactagtccc ccccctccct aaacccactg aatcccctcc caattgcccg 961 cgcaaaagga gaaccgaaag gaggagcgaa gcggaggaca aggaggagcg caggaggaga 1021 cggagacggc ccgtgtgtgt gtgtgtgtgt gtaggtggag tgtgtgtgtc ggccgtctca 1081 gtcggataag catcaggcat cattcagatt cagatcaaga tccccaaccc aaactgaagc 1141 accagaacca ccagaagaac agcaaccacc accaccacca ccaccatgtc gtccagtgag 1201 ccaccgcctc gctacgagcc acccgtggag ccagtcaatg gcattgtaca gccaccggtg 1261 atgccgccag cggagcgacc cggccgcaat acgaaccaac tgcaatatct gatcaagacg 1321 gtgatgaagg tgatatggaa gcaccacttc tcgtggccct ttcaacagcc cgtcgatgcc 1381 aagaagctca acctgcccga ctaccacaag atcatcaaac agcccatgga catgggcacg 1441 atcaagaagc ggctggagaa caactactac tggtccgcca aggagaccat acacgacttc 1501 aacacgatgt tcaacaattg ctatgtctac aacaagcccg gcgaggatgt cgttgtgatg 1561 gcccagacgc tcgagaaggt cttcctccag aagatcgaat cgatgcccaa ggaggagctc 1621 gaactggagc cggtaacggc caagggcggc aagaagaagc aacgggcgcc ggctacgccc 1681 aagtcatcgt caacgcccgg cggcggtgga gcatccaccg gtggtggctc cggtacggcc 1741 tcctcggcgg ccgttagcag cggagctggt agtggctccg ccaaagtctc ggccgccgcc 1801 tcatccgcgc aacagtccgg cctgcaggga gcgacggcgg gagtgggcgg cggtgcggcg 1861 agcacagcgg gaacccaggc gggttccgga ggagcgggag gagcgaccgc cgcccgaccc 1921 gtttccgcca tgggcggcac ggtttcatcg acggccggcg gtgcaccgtc cataccaccg 1981 attagcacaa tgccaccgca cacggtaccg ggcagtacca atacgacgac gacagcgatg 2041 gccggcggcg ctggcggagg agcaggtgcg gctgcggcca atcccaatgc cgccgccctc 2101 atggccagcc tgctgaatgc gggccaaacg ggcggctatc ccggcgcacc cggtcagacg 2161 gcggtgaata gctcctcgct gctggatggc agcacggccg cagttgcggc agcggcggca 2221 gcagcagcag cagcggcggc ggcggcggga gcgggcggag cagcgggatc cgccggtgga 2281 gcagcgggcg ccggagtgac aataccagcc gtgaacgtca atgccgccaa cgccgtgcag 2341 gcctatgtga atgcgggcgt gagcgtcgga gtggacgccg tgataccgcc gcagcagccc 2401 gccaaaataa agaagggcgt caagcggaag gcggacacaa cgacgccgac ggccaatgcc 2461 tttgaatcgc cttacgcgca aatggactcc aaatcggcca agattgcgac gcggcgggag 2521 tcgaatcgtc aggtaattgg caagaagggc tcgggataca acatgtcgcc gctgggcgtc 2581 tccggagttc ccggacttgg cggtctggtt gccggcggcg tcgccggcgt ggcggtggcc 2641 aagaacaagg agaagctatc cgatgcgctc aagtcgtgca acgagatcct caaggagctc 2701 ttctcgaaga agcactcggg ctacgcctgg cccttctaca agccggtgga cgcggaaatg 2761 ctcggcctgc acgactacca cgacatcatc aagaagccca tggatctggg gactgtcaag 2821 cggaaaatgg acaatcgcga gtacaaaagc gcgccggaat tcgccgccga cgtgcgatta 2881 atattcacca actgctacaa gtacaatccg ccagatcacg atgtcgtggc catgggtcgc 2941 aagctgcagg acgtcttcga gatgcgctac gccaacatcc ccgacgagcc ggtggccaat 3001 gcggcccacc accacggaca cggccacggg cacggccatg gccacgccca cagtcacggg 3061 catggtcacg gccacggtca cggtcacggc tacggcggat cctcctcact caagcacgat 3121 gccagcgatt cgtccagcga ggactccagc gacacggaga acgaatcgaa ctcggacgag 3181 gagcgcagcg ccaagctgaa aatgctcgag tccaagctgc tcggcctgca ggaggagatt 3241 cgcaagctgt ccgaggaggc ctccgccaag aagaaggcga agaagaagct caaggagaag 3301 aagaagtcga tgggcggtgg ctccggttcc ggttcagcct ctcatcatgg ccacgcctcg 3361 ggcggcggtg cgaatgccgg tggagcaggc gccaattccg gcggtcatgc gggcggcgtt 3421 tccgtgcccg gcggcggcgt cgggggcctg ggtgccggcg gagcgggcgg cgctaatctc 3481 agtgccctgc tcagcggctc gttggtcggt cccggcggag cagccgtcgc cggcggcgtt 3541 cccaatgtgg gagcactgca cagtcaagtg cacgacgtgg ccatggcctt tggccagctg 3601 gcgggaggcg gtgcctcggc cggcggcggc ggctttggtg caggagtgac ggcatcggga 3661 gcctcggcgg gcggcaaggc gggcaccctg gccggcgctc tggcagcggg cgcagcggcc 3721 ggagccggcg gcacaactgg cagcggcagt ggcagcagta aaggtgctaa gagcaagggc 3781 ggacgaggcg ccaagggcag cggaggcggc ggcggcgttg gaggtagcaa taatgccgct 3841 gcggccaatt ccgctggcgg tgcagcggga gctgctgcgg gcggagccgg agccgtggga 3901 gctgtgggcg gcgctggagc agcaggcggc ggcggcaacg cctccaagcg ggccaagggc 3961 agcagttcgg ccggtgcggg cggcgctgtt ggcggtgcga atgccagtac cggtggcgcc 4021 ggggcgcgcg gcagcagcaa gaagaagccc agccaggtga tgaacttcga ctccgaggag 4081 gaggacacgg ccaagccaat gtcgtacgat gagaagcgcc agctgtcgct cgacatcaac 4141 aagttgccag gcgacaagct gggccgtgtg gtacacatca tccagaaccg ggagccatcg 4201 ctgcgtgact ccaatcccga cgaaatcgag atcgacttcg agacgctgaa gccgtcgacg 4261 ctgcgcgagc ttgaaagcta tgtggcgtcg tgtttgcgca aaaaaacaca taaaaagcct 4321 tccggcaagt cgaaggacga gcagatggcc gagaaaaagc aggagctgga aaagcgcctg 4381 caggacgtca ccggccagct gggggcaagc aagaaaaccg ccaagaaaga tgagtccgcc 4441 tcgaacaagg tcgaggcagt gcagccggcg aatcccgtgt catcgagttc cagttccagc 4501 gattcatcgt cgtcgagttc gagtgatagc agttcgagtg actcgagcga cagtgaagca 4561 ggtgatggtg acgagcgacc gccccgcaag aaaaaatccc gagactcgaa tggaagcaat 4621 gtaaataatc caagtataaa tgtggttctg ggcggcaacc atccgagtgg agcgcttacg 4681 ccgacgaccc tgttgatggg cctggaccat gtggtgaact ccaacacgcc cacatcacaa 4741 atatccaacc tgctgggcaa tgccaatccc ctgacggcag ctgccatgct gaacaataac 4801 aacaagacat cgctgccggg cagcaatttc ggtggtgcgc ccactcccgg cgccggtggt 4861 aacatgttgc acgccggcgg cggcggtgct gcagtttcgg cggcgacggg gcagcagcag 4921 cagcagcagc agcacaacaa gaatggacca aatgatctga gcaaagtgcc gccgggtggc 4981 tccatcaccg ccgccctgcc gccgcacagt ttcggaggag ccggcggagg aggaggagca 5041 gctggagcag cggcaattgt gggcggcaat cagtcgagcg gcggcatacg catagccagc 5101 aatttgcaca agccttccgg cttgggaggc ggcggcggcg gcggtgatct gggcgagcat 5161 catgcggcac tggcggctgc cctgacgtcc ggcgttaaca gcaccggcac tgccggcaac 5221 aacaacggcg gcagcagcaa caacaacacc aatccactgg gcggatcgca tggggatgcg 5281 atggccaatg cctcgctggc ctctggcctc aaacagatac cgcagttcga tgatcccgtc 5341 gagcagtcgc tggcctcgct ggagttcagc gccggttcca cgggcaagtc gtcgctgacg 5401 gacaactttt tgatacagca gcacctgatg cagcccgccg gaccgcagca acagcagcag 5461 cagcagcagc agcaaccctt tggccatcag cagcagcaac agcagcagca catggactac 5521 gtgacggagc tgctgaccaa gggggcggag aatgtgggcg gcatgaacgg gaaccacctg 5581 ctgaacttta acctggacat ggcggcggcc taccagcaga agcatcccca gcagcagcag 5641 caacagcagc agcagcagca ggcgcacaac aacggcttca atgtggccga cttcggcatg 5701 gccggattcg acggccttaa catgacagcg gccacagcat tcctcgatct ggagcacacg 5761 ctccagcagc aacagatgca gcagatgcag ctgcagcagc agcaacacca gcagcaacag 5821 cagcagacgc accagcagca gcagcaacta agccagcagc agctgcagca gcaacagcag 5881 caactgacgc agcagcagca gctgcagcaa cagcagcagc aattccagca gcaacaccaa 5941 cagcagctcc accagcagca gcagcagcag caggtggcca acaagctgct gatcataccc 6001 aagcccatcg aatcgatgat gcccagtccg ccggacaagc agcagtcgca gcagcaccag 6061 aaggtcctgc cgccgcagca gtcgccctcg gacatgaagc tgcatcccag ccaggcggcg 6121 gcggcggccg cgcagggcaa gctggcgcag gccttcaagg cggccaacga gcagaacctg 6181 aagaacgcca gctcgtggtc ctcgctggcc tcggccaact ctccccagtc gcacacgtcg 6241 agcagctcga gcagcagcaa ggccaagccg gccatggact cgttccagca gttccgcaac 6301 aaagccaaag aacgcgaccg tctcaagctg ctggaggcgg ccgagaagga gaagaagaac 6361 cagaaggagg ccgccgagaa ggagcagcag cgcaagcacc acaagtcctc ctcctcctcg 6421 tcctcgtcgt cctcggccgc agcagcccag gcggcagccg ttgcagccgc cacagcagca 6481 gcggcggcgg cggccctggg agcagcagca gcggctgcag tggcctccaa tgcctcgaac 6541 gcctcgggcg gcagcagtag cggaggcggc ggcggcggtg aatccagaag ccaggcgatc 6601 agcggcgaac gcgagcgtga tagggaccgc gagcgggaac gtgagcgctc cggcagcggt 6661 ggcggccagt ccggcaatgg gaacaacagc agcaactcgg ccaacagcaa cggacccggc 6721 agcgcgggca gcggcggcag tggcggcggc ggcggaggca gcggaccagc cagcgccggc 6781 ggaccaaaca gcggcggcgg cggcaatgcc aacagcaaca gtggcggcgg accggcgctg 6841 ctcaatgccg gcagcaatag caacagcggc gtgggcagcg gtggcgccgc cagcagcaac 6901 agcaacagca gcgtcggcgg catcgtcggc agcggcggac ccggctccaa tagccagggc 6961 agcagcggtg gcggcggcgg cggcggagga cctgctagcg gcggcatggg cggcggggcc 7021 ctcgactacg gtcagcaggt ggcggtgcta acgcaggtgg cggcacacgc ccaggcgcag 7081 catgtggcgg ccgctgtggc cgctcaggcg attctggcgg cctcgccctt gggcgccatg 7141 gagagcggaa ggaaaagcgt tcacgatgct cagccgcaga tatcgcgggt ggatgacatc 7201 aaggcgtcgc cgggcggcca gggacagagt tcgccggcac agcaatcgcc gcaggatcgg 7261 gcggccgcca aacgtgccga gcagcggcgg gccgagcagg agcggcgcag gcgcgaagcg 7321 ttggctggcc aaatcgatat gaacatgcag agcgatctca tggccgcctt cgaggagacg 7381 ctgtaggcca aggcccggag aaagtcgacc aaccgggccg taggcgtcag cggcatcacc 7441 tcaactacaa ccaccacctc atcatcctcc agcccatcga ggcggcggac aaggcgccag 7501 ccacggacca cgttggacaa cggcctgcaa tagcagaagc aacacggcta ggacagcaac 7561 aacgacgaca gttcggcata tggaactgtt ggagcaaaca gaaaacaacc aacaaccaag 7621 caaccaacaa ataaaagaaa caaacagcat aggctaaaac caataaagca atgttctaag 7681 gcgtaattaa aatacgtaca tttagtgagt atatatataa tgcatatacg gaaggagcga 7741 gcaaacaaaa agcaaaatgc aaaaagcaaa atgcaaaaag caacatccac cagcaaacaa 7801 aaacataaac ataaagaaaa acaaaaacaa aaacaataca taacagaata tggcaaattt 7861 ccttcggtta gcaattgatt cttcgcaact tttttcaaat cactttcgat tattattgcg 7921 tattactatt acaatgatga taatggatcg tggcgacaag gatgtccgca catggttcca 7981 aagcttatta tttttaatat tattgattgc ataggcaagt ttagttcgta gctatacact 8041 taattaataa tgcttatttt ttttcttaat tgtaacacac acctatgctt agagttgtta 8101 actaatttaa aaagaaaaaa accaacaaac aagaaaaac