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LOCUS XM_044395409 8152 bp mRNA linear INV 09-DEC-2024 (fs(1)h), transcript variant X2, mRNA. ACCESSION XM_044395409 VERSION XM_044395409.2 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_044395409.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8152 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..8152 /gene="fs(1)h" /note="female sterile (1) homeotic; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108055736" CDS 1187..7399 /gene="fs(1)h" /codon_start=1 /product="homeotic protein female sterile isoform X2" /protein_id="XP_044251344.1" /db_xref="GeneID:108055736" /translation="MSSSEPPPRYEPPVEPVNGIVQPPVMPPAERPGRNTNQLQYLIK TVMKVIWKHHFSWPFQQPVDAKKLNLPDYHKIIKQPMDMGTIKKRLENNYYWSAKETI HDFNTMFNNCYVYNKPGEDVVVMAQTLEKVFLQKIESMPKEELELEPVTAKGGKKKQR APATPKSSSTPGGGGASTGGGSGTASSAAVSSGAGSGSAKVSAAASSAQQSGLQGATA GVGGGAASTAGTQAGSGGAGGATAARPVSAMGGTVSSTAGGAPSIPPISTMPPHTVPG STNTTTTAMAGGAGGGAGAAAANPNAAALMASLLNAGQTGGYPGAPGQTAVNSSSLLD GSTAAVAAAAAAAAAAAAAAGAGGAAGSAGGAAGAGVTIPAVNVNAANAVQAYVNAGV SVGVDAVIPPQQPAKIKKGVKRKADTTTPTANAFESPYAQMDSKSAKIATRRESNRQV IGKKGSGYNMSPLGVSGVPGLGGLVAGGVAGVAVAKNKEKLSDALKSCNEILKELFSK KHSGYAWPFYKPVDAEMLGLHDYHDIIKKPMDLGTVKRKMDNREYKSAPEFAADVRLI FTNCYKYNPPDHDVVAMGRKLQDVFEMRYANIPDEPVANAAHHHGHGHGHGHGHAHSH GHGHGHGHGHGYGGSSSLKHDASDSSSEDSSDTENESNSDEERSAKLKMLESKLLGLQ EEIRKLSEEASAKKKAKKKLKEKKKSMGGGSGSGSASHHGHASGGGANAGGAGANSGG HAGGVSVPGGGVGGLGAGGAGGANLSALLSGSLVGPGGAAVAGGVPNVGALHSQVHDV AMAFGQLAGGGASAGGGGFGAGVTASGASAGGKAGTLAGALAAGAAAGAGGTTGSGSG SSKGAKSKGGRGAKGSGGGGGVGGSNNAAAANSAGGAAGAAAGGAGAVGAVGGAGAAG GGGNASKRAKGSSSAGAGGAVGGANASTGGAGARGSSKKKPSQVMNFDSEEEDTAKPM SYDEKRQLSLDINKLPGDKLGRVVHIIQNREPSLRDSNPDEIEIDFETLKPSTLRELE SYVASCLRKKTRKPYYKKPSGKSKDEQMAEKKQELEKRLQDVTGQLGASKKTAKKDES ASNKVEAVQPANPVSSSSSSSDSSSSSSSDSSSSDSSDSEAGDGDERPPRKKKSRDSN GSNVNNPSINVVLGGNHPSGALTPTTLLMGLDHVVNSNTPTSQISNLLGNANPLTAAA MLNNNNKTSLPGSNFGGAPTPGAGGNMLHAGGGGAAVSAATGQQQQQQQHNKNGPNDL SKVPPGGSITAALPPHSFGGAGGGGGAAGAAAIVGGNQSSGGIRIASNLHKPSGLGGG GGGGDLGEHHAALAAALTSGVNSTGTAGNNNGGSSNNNTNPLGGSHGDAMANASLASG LKQIPQFDDPVEQSLASLEFSAGSTGKSSLTDNFLIQQHLMQPAGPQQQQQQQQQQPF GHQQQQQQQHMDYVTELLTKGAENVGGMNGNHLLNFNLDMAAAYQQKHPQQQQQQQQQ QQAHNNGFNVADFGMAGFDGLNMTAATAFLDLEHTLQQQQMQQMQLQQQQHQQQQQQT HQQQQQLSQQQLQQQQQQLTQQQQLQQQQQQFQQQHQQQLHQQQQQQQVANKLLIIPK PIESMMPSPPDKQQSQQHQKVLPPQQSPSDMKLHPSQAAAAAAQGKLAQAFKAANEQN LKNASSWSSLASANSPQSHTSSSSSSSKAKPAMDSFQQFRNKAKERDRLKLLEAAEKE KKNQKEAAEKEQQRKHHKSSSSSSSSSSAAAAQAAAVAAATAAAAAAALGAAAAAAVA SNASNASGGSSSGGGGGGESRSQAISGERERDRDRERERERSGSGGGQSGNGNNSSNS ANSNGPGSAGSGGSGGGGGGSGPASAGGPNSGGGGNANSNSGGGPALLNAGSNSNSGV GSGGAASSNSNSSVGGIVGSGGPGSNSQGSSGGGGGGGGPASGGMGGGALDYGQQVAV LTQVAAHAQAQHVAAAVAAQAILAASPLGAMESGRKSVHDAQPQISRVDDIKASPGGQ GQSSPAQQSPQDRAAAKRAEQRRAEQERRRREALAGQIDMNMQSDLMAAFEETL" misc_feature 1286..1606 /gene="fs(1)h" /note="Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino...; Region: Bromo_Brdt_I_like; cd05497" /db_xref="CDD:99929" misc_feature order(1373..1375,1394..1396,1403..1405,1520..1522, 1532..1534,1550..1552) /gene="fs(1)h" /note="acetyllysine binding site [active]" /db_xref="CDD:99929" misc_feature 2669..2971 /gene="fs(1)h" /note="Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino...; Region: Bromo_Brdt_II_like; cd05498" /db_xref="CDD:99930" misc_feature order(2747..2749,2768..2770,2777..2779,2894..2896, 2906..2908,2924..2926) /gene="fs(1)h" /note="acetyllysine binding site [active]" /db_xref="CDD:99930" misc_feature 4097..4291 /gene="fs(1)h" /note="Bromodomain extra-terminal - transcription regulation; Region: BET; pfam17035" /db_xref="CDD:435704" misc_feature <7334..7396 /gene="fs(1)h" /note="C-terminal domain of bromodomain protein 4; Region: BRD4_CDT; pfam17105" /db_xref="CDD:465349" polyA_site 8152 /gene="fs(1)h" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cctcgtgccc gtcggccgtc catgtgtgcg tgtgtattcg cattttcagt aatttcgaaa 61 aaaaattttg tatatttgat ggcgacagcg actgttactc acaagaaact cgcgcgtttg 121 tcgaaaaatc gtagcgcgta cgtatatatc ggtgtgtaga aattactaaa aattatgttg 181 caacttttta acagtcgtgt acaatctgca tgttgtatat gttcaattta aatacaacaa 241 caatagcaac aacgcaaacg caacacagtt ttaagcaaca acaaacaaac aacaaccaaa 301 ccgacaagct aaacttggct aaagcaacaa caagcagcac acccaacaac aaaagcaaca 361 acaaacacca ccagcagtag cagcgcggcc ataaacaaaa gtcaaaatca aaaaacattc 421 ggatatattc ggatattatc gcccataaac ggataaggtg caacagaacg tgtggatttc 481 actaaagata actaggaaaa tagaggaaat ccgaaggaaa tatttacagc cagtcgcctg 541 ctggaatatt gcgactaata gcgaaggatt caaagccaca atgcctctgg tagcagtcgt 601 tgttgtacca tccttggccc tcggatcagc taaagccagt cgattccaat gagaggagcc 661 tgggccctga gaatctggag caggcgagtg cacagacatt gctgagcatg aagcatcata 721 cactacggac cactacacag cattatccct tgaacaagaa gagatttcta tcagaaagca 781 gaaaggcacc aggagcaaca ggatcaggcg gaggatcacc aggagtagga gtcgtcgcag 841 gagtcgcagg aacagccgga gaagaaggcg cagccagtcg caggaggagg aggtggtcac 901 cggccacata agactagtcc cccccctccc taaacccact gaatcccctc ccaattgccc 961 gcgcaaaagg agaaccgaaa ggaggagcga agcggaggac aaggaggagc gcaggaggag 1021 acggagacgg cccgtgtgtg tgtgtgtgtg tgtaggtgga gtgtgtgtgt cggccgtctc 1081 agtcggataa gcatcaggca tcattcagat tcagatcaag atccccaacc caaactgaag 1141 caccagaacc accagaagaa cagcaaccac caccaccacc accaccatgt cgtccagtga 1201 gccaccgcct cgctacgagc cacccgtgga gccagtcaat ggcattgtac agccaccggt 1261 gatgccgcca gcggagcgac ccggccgcaa tacgaaccaa ctgcaatatc tgatcaagac 1321 ggtgatgaag gtgatatgga agcaccactt ctcgtggccc tttcaacagc ccgtcgatgc 1381 caagaagctc aacctgcccg actaccacaa gatcatcaaa cagcccatgg acatgggcac 1441 gatcaagaag cggctggaga acaactacta ctggtccgcc aaggagacca tacacgactt 1501 caacacgatg ttcaacaatt gctatgtcta caacaagccc ggcgaggatg tcgttgtgat 1561 ggcccagacg ctcgagaagg tcttcctcca gaagatcgaa tcgatgccca aggaggagct 1621 cgaactggag ccggtaacgg ccaagggcgg caagaagaag caacgggcgc cggctacgcc 1681 caagtcatcg tcaacgcccg gcggcggtgg agcatccacc ggtggtggct ccggtacggc 1741 ctcctcggcg gccgttagca gcggagctgg tagtggctcc gccaaagtct cggccgccgc 1801 ctcatccgcg caacagtccg gcctgcaggg agcgacggcg ggagtgggcg gcggtgcggc 1861 gagcacagcg ggaacccagg cgggttccgg aggagcggga ggagcgaccg ccgcccgacc 1921 cgtttccgcc atgggcggca cggtttcatc gacggccggc ggtgcaccgt ccataccacc 1981 gattagcaca atgccaccgc acacggtacc gggcagtacc aatacgacga cgacagcgat 2041 ggccggcggc gctggcggag gagcaggtgc ggctgcggcc aatcccaatg ccgccgccct 2101 catggccagc ctgctgaatg cgggccaaac gggcggctat cccggcgcac ccggtcagac 2161 ggcggtgaat agctcctcgc tgctggatgg cagcacggcc gcagttgcgg cagcggcggc 2221 agcagcagca gcagcggcgg cggcggcggg agcgggcgga gcagcgggat ccgccggtgg 2281 agcagcgggc gccggagtga caataccagc cgtgaacgtc aatgccgcca acgccgtgca 2341 ggcctatgtg aatgcgggcg tgagcgtcgg agtggacgcc gtgataccgc cgcagcagcc 2401 cgccaaaata aagaagggcg tcaagcggaa ggcggacaca acgacgccga cggccaatgc 2461 ctttgaatcg ccttacgcgc aaatggactc caaatcggcc aagattgcga cgcggcggga 2521 gtcgaatcgt caggtaattg gcaagaaggg ctcgggatac aacatgtcgc cgctgggcgt 2581 ctccggagtt cccggacttg gcggtctggt tgccggcggc gtcgccggcg tggcggtggc 2641 caagaacaag gagaagctat ccgatgcgct caagtcgtgc aacgagatcc tcaaggagct 2701 cttctcgaag aagcactcgg gctacgcctg gcccttctac aagccggtgg acgcggaaat 2761 gctcggcctg cacgactacc acgacatcat caagaagccc atggatctgg ggactgtcaa 2821 gcggaaaatg gacaatcgcg agtacaaaag cgcgccggaa ttcgccgccg acgtgcgatt 2881 aatattcacc aactgctaca agtacaatcc gccagatcac gatgtcgtgg ccatgggtcg 2941 caagctgcag gacgtcttcg agatgcgcta cgccaacatc cccgacgagc cggtggccaa 3001 tgcggcccac caccacggac acggccacgg gcacggccat ggccacgccc acagtcacgg 3061 gcatggtcac ggccacggtc acggtcacgg ctacggcgga tcctcctcac tcaagcacga 3121 tgccagcgat tcgtccagcg aggactccag cgacacggag aacgaatcga actcggacga 3181 ggagcgcagc gccaagctga aaatgctcga gtccaagctg ctcggcctgc aggaggagat 3241 tcgcaagctg tccgaggagg cctccgccaa gaagaaggcg aagaagaagc tcaaggagaa 3301 gaagaagtcg atgggcggtg gctccggttc cggttcagcc tctcatcatg gccacgcctc 3361 gggcggcggt gcgaatgccg gtggagcagg cgccaattcc ggcggtcatg cgggcggcgt 3421 ttccgtgccc ggcggcggcg tcgggggcct gggtgccggc ggagcgggcg gcgctaatct 3481 cagtgccctg ctcagcggct cgttggtcgg tcccggcgga gcagccgtcg ccggcggcgt 3541 tcccaatgtg ggagcactgc acagtcaagt gcacgacgtg gccatggcct ttggccagct 3601 ggcgggaggc ggtgcctcgg ccggcggcgg cggctttggt gcaggagtga cggcatcggg 3661 agcctcggcg ggcggcaagg cgggcaccct ggccggcgct ctggcagcgg gcgcagcggc 3721 cggagccggc ggcacaactg gcagcggcag tggcagcagt aaaggtgcta agagcaaggg 3781 cggacgaggc gccaagggca gcggaggcgg cggcggcgtt ggaggtagca ataatgccgc 3841 tgcggccaat tccgctggcg gtgcagcggg agctgctgcg ggcggagccg gagccgtggg 3901 agctgtgggc ggcgctggag cagcaggcgg cggcggcaac gcctccaagc gggccaaggg 3961 cagcagttcg gccggtgcgg gcggcgctgt tggcggtgcg aatgccagta ccggtggcgc 4021 cggggcgcgc ggcagcagca agaagaagcc cagccaggtg atgaacttcg actccgagga 4081 ggaggacacg gccaagccaa tgtcgtacga tgagaagcgc cagctgtcgc tcgacatcaa 4141 caagttgcca ggcgacaagc tgggccgtgt ggtacacatc atccagaacc gggagccatc 4201 gctgcgtgac tccaatcccg acgaaatcga gatcgacttc gagacgctga agccgtcgac 4261 gctgcgcgag cttgaaagct atgtggcgtc gtgtttgcgc aaaaaaacac gtaagccata 4321 ttataaaaag ccttccggca agtcgaagga cgagcagatg gccgagaaaa agcaggagct 4381 ggaaaagcgc ctgcaggacg tcaccggcca gctgggggca agcaagaaaa ccgccaagaa 4441 agatgagtcc gcctcgaaca aggtcgaggc agtgcagccg gcgaatcccg tgtcatcgag 4501 ttccagttcc agcgattcat cgtcgtcgag ttcgagtgat agcagttcga gtgactcgag 4561 cgacagtgaa gcaggtgatg gtgacgagcg accgccccgc aagaaaaaat cccgagactc 4621 gaatggaagc aatgtaaata atccaagtat aaatgtggtt ctgggcggca accatccgag 4681 tggagcgctt acgccgacga ccctgttgat gggcctggac catgtggtga actccaacac 4741 gcccacatca caaatatcca acctgctggg caatgccaat cccctgacgg cagctgccat 4801 gctgaacaat aacaacaaga catcgctgcc gggcagcaat ttcggtggtg cgcccactcc 4861 cggcgccggt ggtaacatgt tgcacgccgg cggcggcggt gctgcagttt cggcggcgac 4921 ggggcagcag cagcagcagc agcagcacaa caagaatgga ccaaatgatc tgagcaaagt 4981 gccgccgggt ggctccatca ccgccgccct gccgccgcac agtttcggag gagccggcgg 5041 aggaggagga gcagctggag cagcggcaat tgtgggcggc aatcagtcga gcggcggcat 5101 acgcatagcc agcaatttgc acaagccttc cggcttggga ggcggcggcg gcggcggtga 5161 tctgggcgag catcatgcgg cactggcggc tgccctgacg tccggcgtta acagcaccgg 5221 cactgccggc aacaacaacg gcggcagcag caacaacaac accaatccac tgggcggatc 5281 gcatggggat gcgatggcca atgcctcgct ggcctctggc ctcaaacaga taccgcagtt 5341 cgatgatccc gtcgagcagt cgctggcctc gctggagttc agcgccggtt ccacgggcaa 5401 gtcgtcgctg acggacaact ttttgataca gcagcacctg atgcagcccg ccggaccgca 5461 gcaacagcag cagcagcagc agcagcaacc ctttggccat cagcagcagc aacagcagca 5521 gcacatggac tacgtgacgg agctgctgac caagggggcg gagaatgtgg gcggcatgaa 5581 cgggaaccac ctgctgaact ttaacctgga catggcggcg gcctaccagc agaagcatcc 5641 ccagcagcag cagcaacagc agcagcagca gcaggcgcac aacaacggct tcaatgtggc 5701 cgacttcggc atggccggat tcgacggcct taacatgaca gcggccacag cattcctcga 5761 tctggagcac acgctccagc agcaacagat gcagcagatg cagctgcagc agcagcaaca 5821 ccagcagcaa cagcagcaga cgcaccagca gcagcagcaa ctaagccagc agcagctgca 5881 gcagcaacag cagcaactga cgcagcagca gcagctgcag caacagcagc agcaattcca 5941 gcagcaacac caacagcagc tccaccagca gcagcagcag cagcaggtgg ccaacaagct 6001 gctgatcata cccaagccca tcgaatcgat gatgcccagt ccgccggaca agcagcagtc 6061 gcagcagcac cagaaggtcc tgccgccgca gcagtcgccc tcggacatga agctgcatcc 6121 cagccaggcg gcggcggcgg ccgcgcaggg caagctggcg caggccttca aggcggccaa 6181 cgagcagaac ctgaagaacg ccagctcgtg gtcctcgctg gcctcggcca actctcccca 6241 gtcgcacacg tcgagcagct cgagcagcag caaggccaag ccggccatgg actcgttcca 6301 gcagttccgc aacaaagcca aagaacgcga ccgtctcaag ctgctggagg cggccgagaa 6361 ggagaagaag aaccagaagg aggccgccga gaaggagcag cagcgcaagc accacaagtc 6421 ctcctcctcc tcgtcctcgt cgtcctcggc cgcagcagcc caggcggcag ccgttgcagc 6481 cgccacagca gcagcggcgg cggcggccct gggagcagca gcagcggctg cagtggcctc 6541 caatgcctcg aacgcctcgg gcggcagcag tagcggaggc ggcggcggcg gtgaatccag 6601 aagccaggcg atcagcggcg aacgcgagcg tgatagggac cgcgagcggg aacgtgagcg 6661 ctccggcagc ggtggcggcc agtccggcaa tgggaacaac agcagcaact cggccaacag 6721 caacggaccc ggcagcgcgg gcagcggcgg cagtggcggc ggcggcggag gcagcggacc 6781 agccagcgcc ggcggaccaa acagcggcgg cggcggcaat gccaacagca acagtggcgg 6841 cggaccggcg ctgctcaatg ccggcagcaa tagcaacagc ggcgtgggca gcggtggcgc 6901 cgccagcagc aacagcaaca gcagcgtcgg cggcatcgtc ggcagcggcg gacccggctc 6961 caatagccag ggcagcagcg gtggcggcgg cggcggcgga ggacctgcta gcggcggcat 7021 gggcggcggg gccctcgact acggtcagca ggtggcggtg ctaacgcagg tggcggcaca 7081 cgcccaggcg cagcatgtgg cggccgctgt ggccgctcag gcgattctgg cggcctcgcc 7141 cttgggcgcc atggagagcg gaaggaaaag cgttcacgat gctcagccgc agatatcgcg 7201 ggtggatgac atcaaggcgt cgccgggcgg ccagggacag agttcgccgg cacagcaatc 7261 gccgcaggat cgggcggccg ccaaacgtgc cgagcagcgg cgggccgagc aggagcggcg 7321 caggcgcgaa gcgttggctg gccaaatcga tatgaacatg cagagcgatc tcatggccgc 7381 cttcgaggag acgctgtagg ccaaggcccg gagaaagtcg accaaccggg ccgtaggcgt 7441 cagcggcatc acctcaacta caaccaccac ctcatcatcc tccagcccat cgaggcggcg 7501 gacaaggcgc cagccacgga ccacgttgga caacggcctg caatagcaga agcaacacgg 7561 ctaggacagc aacaacgacg acagttcggc atatggaact gttggagcaa acagaaaaca 7621 accaacaacc aagcaaccaa caaataaaag aaacaaacag cataggctaa aaccaataaa 7681 gcaatgttct aaggcgtaat taaaatacgt acatttagtg agtatatata taatgcatat 7741 acggaaggag cgagcaaaca aaaagcaaaa tgcaaaaagc aaaatgcaaa aagcaacatc 7801 caccagcaaa caaaaacata aacataaaga aaaacaaaaa caaaaacaat acataacaga 7861 atatggcaaa tttccttcgg ttagcaattg attcttcgca acttttttca aatcactttc 7921 gattattatt gcgtattact attacaatga tgataatgga tcgtggcgac aaggatgtcc 7981 gcacatggtt ccaaagctta ttatttttaa tattattgat tgcataggca agtttagttc 8041 gtagctatac acttaattaa taatgcttat tttttttctt aattgtaaca cacacctatg 8101 cttagagttg ttaactaatt taaaaagaaa aaaaccaaca aacaagaaaa ac