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LOCUS XM_044395406 7743 bp mRNA linear INV 09-DEC-2024 (fs(1)h), transcript variant X6, mRNA. ACCESSION XM_044395406 VERSION XM_044395406.2 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_044395406.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7743 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..7743 /gene="fs(1)h" /note="female sterile (1) homeotic; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108055736" CDS 778..6990 /gene="fs(1)h" /codon_start=1 /product="homeotic protein female sterile isoform X1" /protein_id="XP_044251341.1" /db_xref="GeneID:108055736" /translation="MSSSEPPPRYEPPVEPVNGIVQPPVMPPAERPGRNTNQLQYLIK TVMKVIWKHHFSWPFQQPVDAKKLNLPDYHKIIKQPMDMGTIKKRLENNYYWSAKETI HDFNTMFNNCYVYNKPGEDVVVMAQTLEKVFLQKIESMPKEELELEPVTAKGGKKKQR APATPKSSSTPGGGGASTGGGSGTASSAAVSSGAGSGSAKVSAAASSAQQSGLQGATA GVGGGAASTAGTQAGSGGAGGATAARPVSAMGGTVSSTAGGAPSIPPISTMPPHTVPG STNTTTTAMAGGAGGGAGAAAANPNAAALMASLLNAGQTGGYPGAPGQTAVNSSSLLD GSTAAVAAAAAAAAAAAAAAGAGGAAGSAGGAAGAGVTIPAVNVNAANAVQAYVNAGV SVGVDAVIPPQQPAKIKKGVKRKADTTTPTANAFESPYAQMDSKSAKIATRRESNRQD LTFQGSGYNMSPLGVSGVPGLGGLVAGGVAGVAVAKNKEKLSDALKSCNEILKELFSK KHSGYAWPFYKPVDAEMLGLHDYHDIIKKPMDLGTVKRKMDNREYKSAPEFAADVRLI FTNCYKYNPPDHDVVAMGRKLQDVFEMRYANIPDEPVANAAHHHGHGHGHGHGHAHSH GHGHGHGHGHGYGGSSSLKHDASDSSSEDSSDTENESNSDEERSAKLKMLESKLLGLQ EEIRKLSEEASAKKKAKKKLKEKKKSMGGGSGSGSASHHGHASGGGANAGGAGANSGG HAGGVSVPGGGVGGLGAGGAGGANLSALLSGSLVGPGGAAVAGGVPNVGALHSQVHDV AMAFGQLAGGGASAGGGGFGAGVTASGASAGGKAGTLAGALAAGAAAGAGGTTGSGSG SSKGAKSKGGRGAKGSGGGGGVGGSNNAAAANSAGGAAGAAAGGAGAVGAVGGAGAAG GGGNASKRAKGSSSAGAGGAVGGANASTGGAGARGSSKKKPSQVMNFDSEEEDTAKPM SYDEKRQLSLDINKLPGDKLGRVVHIIQNREPSLRDSNPDEIEIDFETLKPSTLRELE SYVASCLRKKTRKPYYKKPSGKSKDEQMAEKKQELEKRLQDVTGQLGASKKTAKKDES ASNKVEAVQPANPVSSSSSSSDSSSSSSSDSSSSDSSDSEAGDGDERPPRKKKSRDSN GSNVNNPSINVVLGGNHPSGALTPTTLLMGLDHVVNSNTPTSQISNLLGNANPLTAAA MLNNNNKTSLPGSNFGGAPTPGAGGNMLHAGGGGAAVSAATGQQQQQQQHNKNGPNDL SKVPPGGSITAALPPHSFGGAGGGGGAAGAAAIVGGNQSSGGIRIASNLHKPSGLGGG GGGGDLGEHHAALAAALTSGVNSTGTAGNNNGGSSNNNTNPLGGSHGDAMANASLASG LKQIPQFDDPVEQSLASLEFSAGSTGKSSLTDNFLIQQHLMQPAGPQQQQQQQQQQPF GHQQQQQQQHMDYVTELLTKGAENVGGMNGNHLLNFNLDMAAAYQQKHPQQQQQQQQQ QQAHNNGFNVADFGMAGFDGLNMTAATAFLDLEHTLQQQQMQQMQLQQQQHQQQQQQT HQQQQQLSQQQLQQQQQQLTQQQQLQQQQQQFQQQHQQQLHQQQQQQQVANKLLIIPK PIESMMPSPPDKQQSQQHQKVLPPQQSPSDMKLHPSQAAAAAAQGKLAQAFKAANEQN LKNASSWSSLASANSPQSHTSSSSSSSKAKPAMDSFQQFRNKAKERDRLKLLEAAEKE KKNQKEAAEKEQQRKHHKSSSSSSSSSSAAAAQAAAVAAATAAAAAAALGAAAAAAVA SNASNASGGSSSGGGGGGESRSQAISGERERDRDRERERERSGSGGGQSGNGNNSSNS ANSNGPGSAGSGGSGGGGGGSGPASAGGPNSGGGGNANSNSGGGPALLNAGSNSNSGV GSGGAASSNSNSSVGGIVGSGGPGSNSQGSSGGGGGGGGPASGGMGGGALDYGQQVAV LTQVAAHAQAQHVAAAVAAQAILAASPLGAMESGRKSVHDAQPQISRVDDIKASPGGQ GQSSPAQQSPQDRAAAKRAEQRRAEQERRRREALAGQIDMNMQSDLMAAFEETL" misc_feature 877..1197 /gene="fs(1)h" /note="Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino...; Region: Bromo_Brdt_I_like; cd05497" /db_xref="CDD:99929" misc_feature order(964..966,985..987,994..996,1111..1113,1123..1125, 1141..1143) /gene="fs(1)h" /note="acetyllysine binding site [active]" /db_xref="CDD:99929" misc_feature 1978..>2598 /gene="fs(1)h" /note="Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]; Region: COG5076" /db_xref="CDD:227408" misc_feature 2260..2562 /gene="fs(1)h" /note="Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino...; Region: Bromo_Brdt_II_like; cd05498" /db_xref="CDD:99930" misc_feature order(2338..2340,2359..2361,2368..2370,2485..2487, 2497..2499,2515..2517) /gene="fs(1)h" /note="acetyllysine binding site [active]" /db_xref="CDD:99930" misc_feature 3688..3882 /gene="fs(1)h" /note="Bromodomain extra-terminal - transcription regulation; Region: BET; pfam17035" /db_xref="CDD:435704" misc_feature <6925..6987 /gene="fs(1)h" /note="C-terminal domain of bromodomain protein 4; Region: BRD4_CDT; pfam17105" /db_xref="CDD:465349" polyA_site 7743 /gene="fs(1)h" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gttcgcctct tctgtgccaa aacggcggca aagtaactac tcacgaccaa aacggtggaa 61 gggaaaaact aaacgaatcg gcagaaactg caaaaaaacg actaaaaata agatttacag 121 ccagtcgcct gctggaatat tgcgactaat agcgaaggat tcaaagccac aatgcctctg 181 gtagcagtcg ttgttgtacc atccttggcc ctcggatcag ctaaagccag tcgattccaa 241 tgagaggagc ctgggccctg agaatctgga gcaggcgagt gcacagacat tgctgagcat 301 gaagcatcat acactacgga ccactacaca gcattatccc ttgaacaaga agagatttct 361 atcagaaagc agaaaggcac caggagcaac aggatcaggc ggaggatcac caggagtagg 421 agtcgtcgca ggagtcgcag gaacagccgg agaagaaggc gcagccagtc gcaggaggag 481 gaggtggtca ccggccacat aagactagtc ccccccctcc ctaaacccac tgaatcccct 541 cccaattgcc cgcgcaaaag gagaaccgaa aggaggagcg aagcggagga caaggaggag 601 cgcaggagga gacggagacg gcccgtgtgt gtgtgtgtgt gtgtaggtgg agtgtgtgtg 661 tcggccgtct cagtcggata agcatcaggc atcattcaga ttcagatcaa gatccccaac 721 ccaaactgaa gcaccagaac caccagaaga acagcaacca ccaccaccac caccaccatg 781 tcgtccagtg agccaccgcc tcgctacgag ccacccgtgg agccagtcaa tggcattgta 841 cagccaccgg tgatgccgcc agcggagcga cccggccgca atacgaacca actgcaatat 901 ctgatcaaga cggtgatgaa ggtgatatgg aagcaccact tctcgtggcc ctttcaacag 961 cccgtcgatg ccaagaagct caacctgccc gactaccaca agatcatcaa acagcccatg 1021 gacatgggca cgatcaagaa gcggctggag aacaactact actggtccgc caaggagacc 1081 atacacgact tcaacacgat gttcaacaat tgctatgtct acaacaagcc cggcgaggat 1141 gtcgttgtga tggcccagac gctcgagaag gtcttcctcc agaagatcga atcgatgccc 1201 aaggaggagc tcgaactgga gccggtaacg gccaagggcg gcaagaagaa gcaacgggcg 1261 ccggctacgc ccaagtcatc gtcaacgccc ggcggcggtg gagcatccac cggtggtggc 1321 tccggtacgg cctcctcggc ggccgttagc agcggagctg gtagtggctc cgccaaagtc 1381 tcggccgccg cctcatccgc gcaacagtcc ggcctgcagg gagcgacggc gggagtgggc 1441 ggcggtgcgg cgagcacagc gggaacccag gcgggttccg gaggagcggg aggagcgacc 1501 gccgcccgac ccgtttccgc catgggcggc acggtttcat cgacggccgg cggtgcaccg 1561 tccataccac cgattagcac aatgccaccg cacacggtac cgggcagtac caatacgacg 1621 acgacagcga tggccggcgg cgctggcgga ggagcaggtg cggctgcggc caatcccaat 1681 gccgccgccc tcatggccag cctgctgaat gcgggccaaa cgggcggcta tcccggcgca 1741 cccggtcaga cggcggtgaa tagctcctcg ctgctggatg gcagcacggc cgcagttgcg 1801 gcagcggcgg cagcagcagc agcagcggcg gcggcggcgg gagcgggcgg agcagcggga 1861 tccgccggtg gagcagcggg cgccggagtg acaataccag ccgtgaacgt caatgccgcc 1921 aacgccgtgc aggcctatgt gaatgcgggc gtgagcgtcg gagtggacgc cgtgataccg 1981 ccgcagcagc ccgccaaaat aaagaagggc gtcaagcgga aggcggacac aacgacgccg 2041 acggccaatg cctttgaatc gccttacgcg caaatggact ccaaatcggc caagattgcg 2101 acgcggcggg agtcgaatcg tcaggatctt acattccagg gctcgggata caacatgtcg 2161 ccgctgggcg tctccggagt tcccggactt ggcggtctgg ttgccggcgg cgtcgccggc 2221 gtggcggtgg ccaagaacaa ggagaagcta tccgatgcgc tcaagtcgtg caacgagatc 2281 ctcaaggagc tcttctcgaa gaagcactcg ggctacgcct ggcccttcta caagccggtg 2341 gacgcggaaa tgctcggcct gcacgactac cacgacatca tcaagaagcc catggatctg 2401 gggactgtca agcggaaaat ggacaatcgc gagtacaaaa gcgcgccgga attcgccgcc 2461 gacgtgcgat taatattcac caactgctac aagtacaatc cgccagatca cgatgtcgtg 2521 gccatgggtc gcaagctgca ggacgtcttc gagatgcgct acgccaacat ccccgacgag 2581 ccggtggcca atgcggccca ccaccacgga cacggccacg ggcacggcca tggccacgcc 2641 cacagtcacg ggcatggtca cggccacggt cacggtcacg gctacggcgg atcctcctca 2701 ctcaagcacg atgccagcga ttcgtccagc gaggactcca gcgacacgga gaacgaatcg 2761 aactcggacg aggagcgcag cgccaagctg aaaatgctcg agtccaagct gctcggcctg 2821 caggaggaga ttcgcaagct gtccgaggag gcctccgcca agaagaaggc gaagaagaag 2881 ctcaaggaga agaagaagtc gatgggcggt ggctccggtt ccggttcagc ctctcatcat 2941 ggccacgcct cgggcggcgg tgcgaatgcc ggtggagcag gcgccaattc cggcggtcat 3001 gcgggcggcg tttccgtgcc cggcggcggc gtcgggggcc tgggtgccgg cggagcgggc 3061 ggcgctaatc tcagtgccct gctcagcggc tcgttggtcg gtcccggcgg agcagccgtc 3121 gccggcggcg ttcccaatgt gggagcactg cacagtcaag tgcacgacgt ggccatggcc 3181 tttggccagc tggcgggagg cggtgcctcg gccggcggcg gcggctttgg tgcaggagtg 3241 acggcatcgg gagcctcggc gggcggcaag gcgggcaccc tggccggcgc tctggcagcg 3301 ggcgcagcgg ccggagccgg cggcacaact ggcagcggca gtggcagcag taaaggtgct 3361 aagagcaagg gcggacgagg cgccaagggc agcggaggcg gcggcggcgt tggaggtagc 3421 aataatgccg ctgcggccaa ttccgctggc ggtgcagcgg gagctgctgc gggcggagcc 3481 ggagccgtgg gagctgtggg cggcgctgga gcagcaggcg gcggcggcaa cgcctccaag 3541 cgggccaagg gcagcagttc ggccggtgcg ggcggcgctg ttggcggtgc gaatgccagt 3601 accggtggcg ccggggcgcg cggcagcagc aagaagaagc ccagccaggt gatgaacttc 3661 gactccgagg aggaggacac ggccaagcca atgtcgtacg atgagaagcg ccagctgtcg 3721 ctcgacatca acaagttgcc aggcgacaag ctgggccgtg tggtacacat catccagaac 3781 cgggagccat cgctgcgtga ctccaatccc gacgaaatcg agatcgactt cgagacgctg 3841 aagccgtcga cgctgcgcga gcttgaaagc tatgtggcgt cgtgtttgcg caaaaaaaca 3901 cgtaagccat attataaaaa gccttccggc aagtcgaagg acgagcagat ggccgagaaa 3961 aagcaggagc tggaaaagcg cctgcaggac gtcaccggcc agctgggggc aagcaagaaa 4021 accgccaaga aagatgagtc cgcctcgaac aaggtcgagg cagtgcagcc ggcgaatccc 4081 gtgtcatcga gttccagttc cagcgattca tcgtcgtcga gttcgagtga tagcagttcg 4141 agtgactcga gcgacagtga agcaggtgat ggtgacgagc gaccgccccg caagaaaaaa 4201 tcccgagact cgaatggaag caatgtaaat aatccaagta taaatgtggt tctgggcggc 4261 aaccatccga gtggagcgct tacgccgacg accctgttga tgggcctgga ccatgtggtg 4321 aactccaaca cgcccacatc acaaatatcc aacctgctgg gcaatgccaa tcccctgacg 4381 gcagctgcca tgctgaacaa taacaacaag acatcgctgc cgggcagcaa tttcggtggt 4441 gcgcccactc ccggcgccgg tggtaacatg ttgcacgccg gcggcggcgg tgctgcagtt 4501 tcggcggcga cggggcagca gcagcagcag cagcagcaca acaagaatgg accaaatgat 4561 ctgagcaaag tgccgccggg tggctccatc accgccgccc tgccgccgca cagtttcgga 4621 ggagccggcg gaggaggagg agcagctgga gcagcggcaa ttgtgggcgg caatcagtcg 4681 agcggcggca tacgcatagc cagcaatttg cacaagcctt ccggcttggg aggcggcggc 4741 ggcggcggtg atctgggcga gcatcatgcg gcactggcgg ctgccctgac gtccggcgtt 4801 aacagcaccg gcactgccgg caacaacaac ggcggcagca gcaacaacaa caccaatcca 4861 ctgggcggat cgcatgggga tgcgatggcc aatgcctcgc tggcctctgg cctcaaacag 4921 ataccgcagt tcgatgatcc cgtcgagcag tcgctggcct cgctggagtt cagcgccggt 4981 tccacgggca agtcgtcgct gacggacaac tttttgatac agcagcacct gatgcagccc 5041 gccggaccgc agcaacagca gcagcagcag cagcagcaac cctttggcca tcagcagcag 5101 caacagcagc agcacatgga ctacgtgacg gagctgctga ccaagggggc ggagaatgtg 5161 ggcggcatga acgggaacca cctgctgaac tttaacctgg acatggcggc ggcctaccag 5221 cagaagcatc cccagcagca gcagcaacag cagcagcagc agcaggcgca caacaacggc 5281 ttcaatgtgg ccgacttcgg catggccgga ttcgacggcc ttaacatgac agcggccaca 5341 gcattcctcg atctggagca cacgctccag cagcaacaga tgcagcagat gcagctgcag 5401 cagcagcaac accagcagca acagcagcag acgcaccagc agcagcagca actaagccag 5461 cagcagctgc agcagcaaca gcagcaactg acgcagcagc agcagctgca gcaacagcag 5521 cagcaattcc agcagcaaca ccaacagcag ctccaccagc agcagcagca gcagcaggtg 5581 gccaacaagc tgctgatcat acccaagccc atcgaatcga tgatgcccag tccgccggac 5641 aagcagcagt cgcagcagca ccagaaggtc ctgccgccgc agcagtcgcc ctcggacatg 5701 aagctgcatc ccagccaggc ggcggcggcg gccgcgcagg gcaagctggc gcaggccttc 5761 aaggcggcca acgagcagaa cctgaagaac gccagctcgt ggtcctcgct ggcctcggcc 5821 aactctcccc agtcgcacac gtcgagcagc tcgagcagca gcaaggccaa gccggccatg 5881 gactcgttcc agcagttccg caacaaagcc aaagaacgcg accgtctcaa gctgctggag 5941 gcggccgaga aggagaagaa gaaccagaag gaggccgccg agaaggagca gcagcgcaag 6001 caccacaagt cctcctcctc ctcgtcctcg tcgtcctcgg ccgcagcagc ccaggcggca 6061 gccgttgcag ccgccacagc agcagcggcg gcggcggccc tgggagcagc agcagcggct 6121 gcagtggcct ccaatgcctc gaacgcctcg ggcggcagca gtagcggagg cggcggcggc 6181 ggtgaatcca gaagccaggc gatcagcggc gaacgcgagc gtgataggga ccgcgagcgg 6241 gaacgtgagc gctccggcag cggtggcggc cagtccggca atgggaacaa cagcagcaac 6301 tcggccaaca gcaacggacc cggcagcgcg ggcagcggcg gcagtggcgg cggcggcgga 6361 ggcagcggac cagccagcgc cggcggacca aacagcggcg gcggcggcaa tgccaacagc 6421 aacagtggcg gcggaccggc gctgctcaat gccggcagca atagcaacag cggcgtgggc 6481 agcggtggcg ccgccagcag caacagcaac agcagcgtcg gcggcatcgt cggcagcggc 6541 ggacccggct ccaatagcca gggcagcagc ggtggcggcg gcggcggcgg aggacctgct 6601 agcggcggca tgggcggcgg ggccctcgac tacggtcagc aggtggcggt gctaacgcag 6661 gtggcggcac acgcccaggc gcagcatgtg gcggccgctg tggccgctca ggcgattctg 6721 gcggcctcgc ccttgggcgc catggagagc ggaaggaaaa gcgttcacga tgctcagccg 6781 cagatatcgc gggtggatga catcaaggcg tcgccgggcg gccagggaca gagttcgccg 6841 gcacagcaat cgccgcagga tcgggcggcc gccaaacgtg ccgagcagcg gcgggccgag 6901 caggagcggc gcaggcgcga agcgttggct ggccaaatcg atatgaacat gcagagcgat 6961 ctcatggccg ccttcgagga gacgctgtag gccaaggccc ggagaaagtc gaccaaccgg 7021 gccgtaggcg tcagcggcat cacctcaact acaaccacca cctcatcatc ctccagccca 7081 tcgaggcggc ggacaaggcg ccagccacgg accacgttgg acaacggcct gcaatagcag 7141 aagcaacacg gctaggacag caacaacgac gacagttcgg catatggaac tgttggagca 7201 aacagaaaac aaccaacaac caagcaacca acaaataaaa gaaacaaaca gcataggcta 7261 aaaccaataa agcaatgttc taaggcgtaa ttaaaatacg tacatttagt gagtatatat 7321 ataatgcata tacggaagga gcgagcaaac aaaaagcaaa atgcaaaaag caaaatgcaa 7381 aaagcaacat ccaccagcaa acaaaaacat aaacataaag aaaaacaaaa acaaaaacaa 7441 tacataacag aatatggcaa atttccttcg gttagcaatt gattcttcgc aacttttttc 7501 aaatcacttt cgattattat tgcgtattac tattacaatg atgataatgg atcgtggcga 7561 caaggatgtc cgcacatggt tccaaagctt attattttta atattattga ttgcataggc 7621 aagtttagtt cgtagctata cacttaatta ataatgctta ttttttttct taattgtaac 7681 acacacctat gcttagagtt gttaactaat ttaaaaagaa aaaaaccaac aaacaagaaa 7741 aac