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LOCUS XM_044395208 2477 bp mRNA linear INV 09-DEC-2024 transcript variant X1, mRNA. ACCESSION XM_044395208 VERSION XM_044395208.2 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_044395208.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2477 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2477 /gene="Cfp1" /note="CXXC finger protein 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108063526" CDS 69..1934 /gene="Cfp1" /codon_start=1 /product="CXXC-type zinc finger protein 1 isoform X1" /protein_id="XP_044251143.1" /db_xref="GeneID:108063526" /translation="MADKRKYKKTVSRRRMHLPLTTTPQSFQKEEIRREIAREFDLPE RKSKIATILKQEDQAYCICRTSDCSRFMIGCDGCEEWYHGDCIGITEKEAKHIKQYYC RRCKKENPELQTIFRLVATERAAASNAASTSLNAPGLGPPGAPPGAPMATNLQPPPVA TTTTTTTAAATATMKRKNSNAREPKAGKRCGTCEGCRRPNCNQCDACRVRVGHKPRCI FRNCVAQATGGKEASAPQKKREKASAAAAAASKDRKMKANLRAASPEVYLNPELEGMR QCHGPGCCCQARPQSKYCSDKCGFNLATNRIFQVLPQRLQEWNLTPCRAAEDTRKHLE SIRSKQSLVRFALAELEKRSEELNMVVERANRSSIDTLNPHDTGDMEDEQSMYCITCG HEIHSRTAIKHMEKCFNKYESQASFGSIFQTRMEGNNMFCDFYNPASKTYCKRLRVLC PEHSKDPKVNDTDVCGSPLVNQDFGPTGEFCRAPKKNCFKHYAWEKIRRAEIDLERVR QWLKMDDLMEQERMLRQQLTSRANLLGLMLHSTYNHEVMDELVRKQQEHLAEFEKQKR RQAHQQQLQAQQQLYQEKQQQQQQQQQQLLLQQQQQQQQAQLQQQTQLIYLQRKP" misc_feature 246..383 /gene="Cfp1" /note="PHD finger found in CXXC-type zinc finger protein 1 (Cfp1); Region: PHD_Cfp1; cd15553" /db_xref="CDD:277028" misc_feature order(246..248,279..293,303..305,366..368) /gene="Cfp1" /note="putative histone H3 binding site [polypeptide binding]; other site" /db_xref="CDD:277028" misc_feature 612..734 /gene="Cfp1" /note="CXXC zinc finger domain; Region: zf-CXXC; pfam02008" /db_xref="CDD:366873" misc_feature 975..1679 /gene="Cfp1" /note="CpG binding protein C-terminal domain; Region: CpG_bind_C; pfam12269" /db_xref="CDD:463514" ORIGIN 1 atagtttatt tttttctggg acgggacgtt aaatcgcgga cttgaattct cggcgagatt 61 ggagcggcat ggcggacaag cggaaataca agaaaaccgt aagcaggcgg cgaatgcatc 121 tacctttaac cacaacccca caatcattcc agaaagagga gatccggcgg gagattgccc 181 gggaattcga tctgccggag cgcaaatcga agatagccac cattctaaag caggaggatc 241 aggcgtactg catctgccgc acctccgact gctccaggtt catgatcggc tgcgatggct 301 gcgaggagtg gtaccacggc gactgcatcg ggatcaccga gaaggaggcc aagcacatca 361 agcagtacta ctgccgccgc tgcaagaagg agaatcccga gctgcagacc atattccgcc 421 tggtggccac cgaacgggcg gccgcctcga atgccgcctc cacgagtctg aatgccccgg 481 gattgggtcc gccgggtgct cctccaggtg ctccaatggc caccaacctc cagccaccgc 541 cggtggccac cacaaccaca acgaccactg cagcggcgac tgcaacaatg aagcgcaaga 601 acagcaatgc ccgcgaaccg aaggcgggca agcgatgcgg cacctgcgag ggctgccggc 661 gtcccaattg caatcagtgc gacgcctgcc gggtgcgcgt gggccacaag ccgcgctgca 721 tattccgcaa ctgcgtggcc caggcgacgg gcggcaagga ggcgtcggcg ccgcagaaga 781 agcgggagaa agcctccgcc gccgccgccg ccgcttcgaa agatcgcaag atgaaggcga 841 acctgcgggc ggccagtccc gaggtctacc tcaatcccga gctggagggg atgcgccagt 901 gccacggacc cggctgctgc tgccaggcga ggccgcagag caagtactgc agcgacaagt 961 gcggctttaa tttagccacc aacaggattt ttcaggttct gccgcagcgc ctgcaggagt 1021 ggaacctgac gccctgtcgc gccgccgagg acacaaggaa gcacctagag agcattcgct 1081 cgaagcagtc cctcgtgcgc ttcgccctcg ccgagctgga gaagcgctcc gaggagctga 1141 acatggtggt ggagcgggcc aatcgcagct ccatcgacac actgaacccg cacgacaccg 1201 gcgacatgga ggacgagcag agcatgtact gcatcacctg cggccacgag atccactcgc 1261 gcacggccat caagcacatg gagaagtgct tcaacaagta cgagtcgcag gcgagcttcg 1321 gcagcatctt ccagacgcgc atggagggca acaatatgtt ctgcgacttc tacaacccgg 1381 caagtaagac gtattgtaag cggttaaggg tgctgtgtcc cgagcacagc aaggatccca 1441 aggtgaacga cacggatgtg tgtggctcgc cgctggtcaa ccaggacttc ggtcccacgg 1501 gcgagttttg ccgggcgccg aagaagaact gcttcaagca ctacgcgtgg gagaagatac 1561 ggcgggcgga gatcgatctg gagcgtgtgc gccagtggct caagatggac gacctgatgg 1621 agcaggagcg catgctgcga cagcaactga cctcgcgtgc caatctgctc ggcctgatgc 1681 tgcactccac ctacaatcac gaggtgatgg acgagctggt gcgcaagcag caggagcatc 1741 tggccgagtt cgagaagcaa aagcggcggc aggcgcatca gcagcagctg caggcgcagc 1801 agcaactcta ccaggagaag cagcaacagc aacagcagca gcaacagcaa ttgctactgc 1861 agcagcaaca gcagcagcag caggcgcagc tgcagcagca aactcaactc atctacctgc 1921 agcgaaagcc atagatttcc attcctctaa gcgtagttaa agcaagcaat aaactgacat 1981 gcaagaaacc cttttgtacg agagcccaca aatctattat atttttaacc acttacccgt 2041 ttctccgggc aaccggataa cataatttaa gttcccccaa aggaataaaa ggaaaggaag 2101 aggttgctac gcgccgggat cggggaacgc ccctgtttgt tattgaaaac taagcatcaa 2161 atatgcattt attgatagca acctgcccgc aaaagggaaa ggctacactg ggccagctca 2221 accagggaaa tcattcaact tgtcttaagt attttagagc aatctattgt attttgccta 2281 gactaagggt actatatagt ttaataataa atttaatttt agtttaagcc tcttgaatta 2341 tgtgtgttaa ttttataaga tcgcaaattg tttgcgttca agaaaactct ttttctttgt 2401 ttctttatga ttttttgtaa tacccaaaaa agttacaaat tgtgttctgt ttatgttttt 2461 tttcgctgta actatga