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LOCUS XM_044395068 8031 bp mRNA linear INV 09-DEC-2024 (Rab3-GEF), transcript variant X3, mRNA. ACCESSION XM_044395068 VERSION XM_044395068.2 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_044395068.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8031 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..8031 /gene="Rab3-GEF" /note="Rab3 GDP-GTP exchange factor; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108054266" CDS 550..6933 /gene="Rab3-GEF" /codon_start=1 /product="MAP kinase-activating death domain protein isoform X3" /protein_id="XP_044251003.1" /db_xref="GeneID:108054266" /translation="MSDQQKASLCPRLVDYMAIVGAHTTPPMPKGLQGLKAPPVQVPD LLRRYPPSDHADFPLPLDMVYFCQPEGCTSVGPRRTGSAIRDMTSFVFALTDKDSGKT RYGICVNFYRPIERPSSVAGSGAVGQDRPGNGGHAGGGGAGGAGGGGGRGGRRSSAFR RESWRKSMERSSDSAFSSDYRSNVAPSDSDRELTSRRDSDQQRLHSHSHSHHSQSQHH QSQHHQSHPSAGPAVPKLGLMAPSADSESGGSHSPSPRASRKRTKLRNQSLTSLCIIS HHPFFTTFRECLFILKKLIDACNESSSPKRVGASQKMNRDNVWTVLTGHVSDATPSIV LHDVREIETWILRLLSTPVPVPGSTRVEVEVLSPTVHEPLLFALPDHTRFSLVDFPLH LPLELLGVETCLKVWTLIMQENKVLFQSRDYNALSMSVMAFVTMLYPLEYMFPVIPLL PTCLSCAEQLLLAPTPFVIGVPASFLVYKKNFRLPDDIWVVDLDSTKLTPPTGGYEEI PPLPEPEGTILKNHLKQALTSMTSTNTAVSSQQLLPSVRDSLQEPPLLGVSQVRLPLQ TPPHSAQASQRNSMSAQGTISSRQPSPMNSPALNPFVYGTDVDSVDVATRVAMVRFFN AQNTLANFAEHTRTLRLYPRPVVAFQINSFLRSRPRASQFLNQFARTQAVEFLAEWSL TPTNVAFLRVQTGVMDPMQVGDKPKWFAHSLTPIRFSVWDDGSSLNGALRSLKQLECQ PTDESGSDSEGADSSSSSYSSLSDFVSEMASSDLSPSLHDVFGSYNRPHVVPQTLSSN LDPALVYHPPSKLQYPEGIADAAASKEEEDEERADSPVSSSSSRSDLSSPSFNRDSEF DFQPKGSATGGGGGATAPSFELATPLAMRLEATIKMASIEQESDTGSTVTGKSIATGS KLQRHPSDSERPEKKIPPPLTPPVKQPGVSNILARTGSSGSSSSSPGRQSSQSSLFEN FASHAKELVRETTRQSSQEGLLAHVDKHALDEDLDDKMRHTFEKFTLHAKKAAGEASK QALEVSKQAAGVSKNTLEDLTYVGKSTLGDLTKTAKEAATKKGIIKIEEHSMAVANAP PPKSPGSQLATHKQVQQSGGSGGGNNFFSSIGTDFNGLASSTSTMFSGMFGKKNQQKQ VPMPHKPASVSAGKGKTGINFDPFPGRKGLVERTPLIKHSGPRQTQEELTRQQNQERS HSNAENQTFLKDVTNQVLAGEGVGWLKLNRFKKLMEDESYRTLVLSKLNKTLDKKIAP DDHIDDVCVTKPVWKGMLKCVQAIAGGLDVTFSNFGLGGMASVFQLMEVAHTHYWSKE INEGSDMSSSLLSSHAASPMGSRENLRSPSSPNGSHGSALGSEWASPQESRKSSTQLP HGGGPGGSHSGAPVNRRLSSADSQDGQSTTEMFKDMLSQKRSALKNMLTSFDSDAAGS TGALSVVSLGVRLPSSCRSTVSDTEYENTTTSKDSKKSSGNLWSGKSTLSAGFRYTGG HLINTSSSPSPDSPRVYLFEGLLGKDRLNLWNQMQFWEDAFLDAVSQERDMIGMDQGP IEMMERYKSLSESERKRLEHDEDRLLSTMLYNLTAILVMLNVTKDEIRRKIRRLLGKS HIGLVYSQEVHNVVDQINNLNGNDIDLKPLGSRLLHRQSFTVHQGTDVNGPLRFMEVR DDGLVLRSVDGTIVERWWYERLVNMTYSPKTKLLCLWRRNGGQTQLHKYYTRKCKELY NCIKEAMERGGTPTNVPELGGEFPVQDMNTGEGGLLQVCLEGVGLLFSNSKFFVRLDH IRKCFTQKGGIFVLEEYNPKTRNLIQRKYQSSMSDQICYSVLCVFSYVAAGQDQKKNP VVITPQIQDIHAQQKQKHQQQQQHQTAPPVSTAPANPTANPSRMGGKSPAGTISIRHT VPMQKPTITMSTVQPQARMPTVTVPVSVPVPVHVPSPNSNPTPPSNPPPNPGKLPQLP PRVPSQPSTESLASISSPPPKIRAPMTAPPGPPPAIPPRTGAIARSGSVPAARSFVRQ ASANSTPPQYTPQPPPPFVIPKRHSGLARASTLGGSGAAGGGGAAGGSQSQQRASHGS VAAVLQSMPEAEPGYGSGSASASGSGSISGSSSGSGSASGSIAGASPQAHRKH" misc_feature 577..882 /gene="Rab3-GEF" /note="Domain always found upstream of DENN domain, found in a variety of signalling proteins; Region: uDENN; smart00800" /db_xref="CDD:214824" misc_feature 1357..2037 /gene="Rab3-GEF" /note="Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN; Region: DENN; smart00799" /db_xref="CDD:214823" misc_feature 2383..2589 /gene="Rab3-GEF" /note="Domain always found downstream of DENN domain, found in a variety of signalling proteins; Region: dDENN; smart00801" /db_xref="CDD:129037" ORIGIN 1 cattgttcac cattcgacga gaatccaaca agtgcggcat ggaaataccg ttcgtcccac 61 ttcgtgtcac ttcgtctcgc ctcgtgccac tcgcaacggc acacttccag cccccagagc 121 agaggaattt caacaccacc acacacattg cagtggcgcc cgagcaggga cagggtgaaa 181 ggtaatgggg gaatgggttc ggttggcgtc ctttggctta gctgcttggc tcgatggcta 241 gaaaattcag tcacaccacg gccagcgcgc agttagctac agagaaagga aagcaggagc 301 cacaggacac agagctcctt cgtctgcaac tgaccacgag agctgagcaa agaggagcct 361 atatattcct ttttttttgc tgtttgtaca atagaatcga cataaataca gtgattgtcc 421 agtgaatatt ttatattagt gggtgctacg ccatgtcaac agaatgcaac gccctgatag 481 tagaactacc tttaattaac tgaggaaaca acaaacaata actagtgaac taagcaaaca 541 ccatccagga tgtcggacca gcagaaagcc tccctgtgtc cccggctggt ggactacatg 601 gccatcgtgg gtgcccacac gacgcctccg atgccgaaag gactgcaggg cctcaaggcc 661 ccgccggtgc aggtccccga tctgctgcgt cgctaccccc catccgacca tgcggacttc 721 ccactgcccc tggacatggt gtacttttgc cagccggagg gctgcaccag cgtgggaccg 781 cgacgcactg gctccgccat tcgggacatg acctccttcg ttttcgccct gaccgacaag 841 gattcgggca agacgcggta cgggatatgc gtgaacttct accgacccat cgagcggccc 901 agttcggtgg cgggttcggg ggcagttgga caggatcggc cgggaaacgg aggccatgcg 961 ggcggcggag gagcaggtgg agccggcggc ggtggcggac gaggcggccg gagatcgtcg 1021 gccttcaggc gggaatcctg gcgcaagagc atggaacgca gctcggattc ggcatttagc 1081 agcgactaca gaagtaacgt agcgcctagc gattcggacc gtgaactgac ctcgcgtcgc 1141 gattcggacc agcagcgcct ccactcgcac tcgcattcgc accactccca atcgcagcac 1201 caccagtcgc agcaccacca gtcgcacccg tcggcgggtc cggcggtgcc caagctggga 1261 ctgatggccc cctcggcgga ctcggagtcc ggcggcagcc actcgccgtc gccgcgggcc 1321 tcgcgaaagc ggacgaagct gcgcaaccag tcgctcacct cgctgtgcat catctcgcac 1381 cacccgttct tcaccacctt ccgcgagtgc ctcttcatcc tgaagaagct gatcgatgcc 1441 tgcaacgagt cgtcgtcgcc gaagcgagtg ggcgcctccc agaaaatgaa ccgcgacaat 1501 gtgtggacgg tgctgacggg ccatgtcagc gacgcgacac cctcgatcgt cctgcacgat 1561 gtgcgcgaaa tcgagacctg gatcctgcga ctgctctcca cgccggttcc ggtgccggga 1621 tccacacgag tcgaggtgga ggtgctgtcg ccgacggtgc atgagccgct gctgttcgcc 1681 ctgcccgacc acactcgctt ctcgctggtg gacttcccgc tccacctgcc actggagctg 1741 ctcggcgtgg agacctgcct gaaggtgtgg accctgatca tgcaggagaa caaggtgctc 1801 ttccagtcac gcgactacaa cgccctctcc atgtcggtca tggcattcgt cactatgcta 1861 tatccgctgg agtacatgtt ccctgtcatt ccgctcctgc ccacctgcct gagttgtgcg 1921 gagcagctgc tactggcgcc cacgcccttc gtcatcgggg tgcccgcctc gttcctggtc 1981 tacaaaaaga atttcaggct accggatgac atttgggtgg tcgacttgga ctccaccaaa 2041 ctgacgccac cgactggtgg ctacgaggaa ataccaccgc tacctgagcc cgagggcacc 2101 attctgaaga accacctcaa gcaggcactt acctcgatga cgtccaccaa cacggcggtg 2161 tcctcgcaac agcttttgcc atcggtacgg gatagtctcc aggaaccacc attgctgggt 2221 gtttcccagg tgcgacttcc gcttcagacg ccaccccatt cggcgcaggc cagtcaaagg 2281 aactcgatgt cggcccaagg aacgattagt tcccgtcagc ccagtccgat gaactcgccc 2341 gcgctcaatc cattcgttta cggcacggat gtcgattccg tggacgtggc gacgcgagtg 2401 gcgatggtcc ggtttttcaa tgcccaaaat acactggcca atttcgccga gcacacgcgt 2461 acattgcgcc tgtatccgcg acccgtggtc gcatttcaga taaacagttt cctacgctcc 2521 cggccgaggg cctcgcagtt cctgaatcaa ttcgcccgga cgcaggcggt ggagtttctg 2581 gccgagtggt cgctaacgcc cacgaatgtg gcctttctgc gggttcaaac cggggtcatg 2641 gaccccatgc aggtgggcga taagcccaag tggttcgccc actccctgac ccccattcga 2701 ttctcggtct gggacgatgg cagctcgctg aacggagctc tgcgatcgct gaagcagctc 2761 gagtgccagc cgacggacga gagtggctcg gattccgagg gagcggacag cagcagctcg 2821 tcgtacagtt cgctcagtga cttcgtctcg gaaatggcct cctcggatct gtcgcccagc 2881 ctgcacgatg tcttcggctc gtacaatcga ccgcatgtcg tcccgcagac cctgtcctcc 2941 aatttggatc ccgcactggt ttaccatccg cccagcaagc tgcagtaccc ggagggcatt 3001 gccgatgcgg cggccagcaa ggaggaggag gacgaggagc gagccgatag ccccgtttcc 3061 tcatcctcca gtcgctccga tctgagttcg cccagcttta atcgcgattc ggaatttgat 3121 ttccagccaa agggatcagc aactggtggt ggcggaggag caactgcacc cagtttcgag 3181 ttggccacac cgctggccat gcggctggag gccaccatca agatggccag catcgagcag 3241 gaatcggaca cgggatccac ggtcaccggc aagagcatag ccaccggttc caagctccag 3301 agacatccca gtgattccga gcggcccgag aagaagatac cgccaccgct aacgccaccg 3361 gtgaagcagc cgggtgtgag caatattctc gcccggaccg gcagttccgg ctccagttcg 3421 agcagtcccg gtcgccagag ttcccagagc tccctcttcg agaactttgc ctcccatgcc 3481 aaggagttgg tgcgggagac gacgcggcag agcagccagg agggtctact ggcccacgtg 3541 gacaagcatg cgctggacga agatcttgac gacaaaatgc gtcatacctt cgaaaagttc 3601 acgctgcacg ccaaaaaggc ggccggagag gcttcgaagc aggctctgga ggtctccaag 3661 caggcggctg gggtgagcaa gaacacgctc gaggatctca cctatgtggg caagtcgacg 3721 ctgggcgatc tcaccaagac ggccaaggag gcggccacca agaagggcat catcaagatc 3781 gaggagcatt cgatggcggt ggccaatgct ccgccgccca agtcacccgg ctcccaactg 3841 gccacccaca agcaggtgca gcaaagtggc ggttcgggcg gtggcaacaa cttcttctcc 3901 tcgattggca ccgatttcaa tggtctagcc tcatccacat ccaccatgtt ttcgggcatg 3961 tttggcaaaa agaaccaaca gaagcaggtt cccatgccac ataagccggc tagcgtttcc 4021 gcgggaaagg gcaagacggg cattaacttc gatccatttc ccggacgcaa aggactcgtg 4081 gagcggacac cgttgattaa gcactcggga ccgaggcaaa cgcaagagga gctgacccgc 4141 cagcaaaacc aggagcgttc gcatagtaat gccgagaacc agaccttcct caaggacgtc 4201 accaaccagg tgctcgctgg cgagggagtc ggttggctga agctcaatcg gttcaagaag 4261 ctcatggagg acgagtccta tcgcacgctg gtcctcagca agctgaacaa gacgttggac 4321 aagaagatag ctccagatga tcacattgac gatgtgtgcg tgacgaaacc cgtttggaag 4381 ggcatgctca agtgcgtcca ggcgatagcc ggcggattgg acgtgacctt ctcgaacttc 4441 ggcctaggcg gcatggcctc tgtgttccaa ctgatggagg tggcgcacac gcactactgg 4501 agcaaggaga taaacgaggg cagcgacatg tcctccagcc tgctctccag tcacgccgcc 4561 agtccgatgg gcagtcggga gaacctgcga tcgcccagct caccaaacgg ttcccatggt 4621 tcggctttgg gcagcgagtg ggcctcaccg caggagtcac gaaagagctc cacccaattg 4681 ccacacggtg gtggtccggg tggctcgcat tcgggagctc cggtcaatcg acggctgtca 4741 tcggcggaca gccaggatgg ccagtcaacc accgagatgt tcaaggacat gctgtcgcag 4801 aagagaagtg ccttgaagaa catgctcacc tccttcgact cggatgccgc tggctccacg 4861 ggggcgcttt ccgttgtcag tctgggcgtt cgcttgccct ccagctgcag gtccacggtc 4921 tcagacaccg agtacgaaaa tacaaccact tcgaaggatt cgaaaaagag ctctggcaat 4981 ctgtggtccg gaaagtcgac gcttagtgcc ggatttcgtt ataccggagg acacctgatc 5041 aacacctcgt cgtcgccctc gccggacagt ccgcgggtct atctcttcga ggggctgttg 5101 ggcaaggatc gcttgaatct ctggaaccaa atgcagttct gggaggatgc cttcctggat 5161 gctgttagtc aggagcgcga tatgatcggc atggatcagg gtcccattga gatgatggag 5221 cgctacaaat cgctgagcga atcggagcga aagcggcttg agcacgatga ggatcgcttg 5281 ctatctacga tgctctacaa cctgacggcc atcctggtga tgctgaatgt caccaaggac 5341 gagatccgac gcaagattcg tcgccttctg ggcaagagtc acattggctt ggtgtactcc 5401 caggaggtgc acaatgtggt cgatcagatc aataatctga atggcaatga tattgaccta 5461 aagcccctgg gctcacgact gctacatcgc cagagcttca ccgtccacca gggcaccgat 5521 gtgaatggac ccctgcgatt catggaggtg cgggacgatg gactggtgct gcgatcggtg 5581 gacggcacca ttgtggagcg ctggtggtac gagcggctgg tcaacatgac ctattcgccc 5641 aagaccaagc tgctctgcct gtggcgccgc aatggtggtc agacgcaatt gcacaagtac 5701 tacacgagaa agtgcaagga gctgtacaac tgcatcaagg aggccatgga gcgcggcggt 5761 acgcccacca atgtgcccga actgggcggc gagtttccgg ttcaggacat gaacactggg 5821 gagggcggtc tgctgcaggt gtgcctcgag ggtgtcggtt tgttgttctc caacagcaag 5881 ttcttcgtgc gattggatca catccgcaag tgcttcaccc agaagggcgg catctttgtg 5941 ctggaggagt acaatcccaa gacgcgcaat cttatccagc ggaagtatca gtcgagcatg 6001 tccgatcaga tttgctactc ggtgctgtgc gtcttctcct acgtggccgc cggccaggat 6061 cagaagaaga atccggtggt catcacgccg cagatccagg acatccatgc ccagcagaag 6121 cagaagcacc agcagcagca gcagcatcaa accgcgcctc cagtctccac ggccccagca 6181 aatcctaccg caaatcccag tcgcatgggt ggcaaatctc cggctggcac tatctccata 6241 cggcacacgg tgcccatgca gaagcccacc atcaccatgt ccacggtgca gccgcaggcg 6301 aggatgccca cggtcacggt tccggtttcg gtaccagttc cagttcatgt tccttcacca 6361 aattcaaatc ccactccccc atccaatccc cctcccaatc ccggcaagct gccgcaattg 6421 ccgccacgtg ttccatcgca accctcgacg gagagcctgg cctccatctc atcgccgccg 6481 cccaagatcc gcgcaccgat gaccgctcca ccgggaccac cgccggccat accgccgcgc 6541 actggagcga tcgcgcggag cggttcggtg ccggcggccc gatcctttgt gcgccaggca 6601 tcggcgaact ccacgccgcc gcagtacacg ccgcagccgc cgccgccctt tgtgatcccc 6661 aagcggcaca gtggcctggc cagggcctcc actttgggag gatcaggagc agcaggagga 6721 ggaggagcag caggaggatc gcagtcgcag cagcgcgcca gccacggcag cgtcgccgct 6781 gtgctgcaat caatgccgga ggctgagccc ggctatggat ccggttccgc ttccgcttcc 6841 ggttccggtt cgatatccgg ctccagttcc ggctccggtt cggcctcggg ctccattgcc 6901 ggcgcctcgc cgcaggccca tcgcaagcac tgacgaagga gttcgttctt caagtttgga 6961 ggtggaggaa atccaaatcc aggggctggc ggcggtggcg gcggacagat gggcgaggag 7021 ccccatccac atccccatcg cagggacgtc tgccgcacca tctgcatccc ctggctgtga 7081 tcccggcagt cgaccgacta aagcggttca ccctaaacgt ggctaccatc caaaattacc 7141 acatttatgc gcatgacata aatacagcca acttcgataa gagagttctt aaaaatattt 7201 taaaacttga gattccatat aatactatta ataatttatt ccaatttaat tttaattgca 7261 aattttaaac ctttccctga taaatttaaa acctaaattt aaagctttcc gaaaatccta 7321 ataattccta gtaagccact aaaatacatt acataaataa ttttaaaaac tgaaagaagt 7381 tcgcatgtat ttagaaaaga aaacaatcag ttctaaatat aaacatattt atgaggctca 7441 aaaaatagca aacaaatgat gttaaacact agcaacgttt tgctgtctgt ttgtaaatat 7501 agcatgtcta ctaatcagtc atactagtag atcataaact aaacaagcct tgcgcataaa 7561 cgtggtaaaa ggaacccagc attatagcca tcttctgctt ggatcccgaa agccccatat 7621 atagatatat atgtacatgt accgtatttg agctgtattt actgaacctt attctagcca 7681 aatcatatca ttagccgcct ctaactaatc ccatagacga attgtttcct gctaagcttt 7741 aaggcagaga gcgccaaaac aaaagaaaga aactcgctta aacctaccta aatagataat 7801 acgagaaaga tatatacaca gatcgggact tgacttcatt atgggcccat tgaagggcac 7861 aacaaacgaa cacaaacgga aattgaaggc aatctagtta gggatatagt atactatacc 7921 aactaaatcc aaaaaaaaaa gaaatatata tgtgaatatc tagcagacaa ctacgatcat 7981 gcataaaata taaatatata tatatttatg gtaaaggaat ttaactagtt g