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LOCUS XM_044395067 8064 bp mRNA linear INV 09-DEC-2024 (Rab3-GEF), transcript variant X2, mRNA. ACCESSION XM_044395067 VERSION XM_044395067.2 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_044395067.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8064 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..8064 /gene="Rab3-GEF" /note="Rab3 GDP-GTP exchange factor; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108054266" CDS 550..6966 /gene="Rab3-GEF" /codon_start=1 /product="MAP kinase-activating death domain protein isoform X2" /protein_id="XP_044251002.1" /db_xref="GeneID:108054266" /translation="MSDQQKASLCPRLVDYMAIVGAHTTPPMPKGLQGLKAPPVQVPD LLRRYPPSDHADFPLPLDMVYFCQPEGCTSVGPRRTGSAIRDMTSFVFALTDKDSGKT RYGICVNFYRPIERPSSVAGSGAVGQDRPGNGGHAGGGGAGGAGGGGGRGGRRSSAFR RESWRKSMERSSDSAFSSDYRSNVAPSDSDRELTSRRDSDQQRLHSHSHSHHSQSQHH QSQHHQSHPSAGPAVPKLGLMAPSADSESGGSHSPSPRASRKRTKLRNQSLTSLCIIS HHPFFTTFRECLFILKKLIDACNESSSPKRVGASQKMNRDNVWTVLTGHVSDATPSIV LHDVREIETWILRLLSTPVPVPGSTRVEVEVLSPTVHEPLLFALPDHTRFSLVDFPLH LPLELLGVETCLKVWTLIMQENKVLFQSRDYNALSMSVMAFVTMLYPLEYMFPVIPLL PTCLSCAEQLLLAPTPFVIGVPASFLVYKKNFRLPDDIWVVDLDSTKLTPPTGGYEEI PPLPEPEGTILKNHLKQAMLLMDEAGLGALTSMTSTNTAVSSQQLLPSVRDSLQEPPL LGVSQVRLPLQTPPHSAQASQRNSMSAQGTISSRQPSPMNSPALNPFVYGTDVDSVDV ATRVAMVRFFNAQNTLANFAEHTRTLRLYPRPVVAFQINSFLRSRPRASQFLNQFART QAVEFLAEWSLTPTNVAFLRVQTGVMDPMQVGDKPKWFAHSLTPIRFSVWDDGSSLNG ALRSLKQLECQPTDESGSDSEGADSSSSSYSSLSDFVSEMASSDLSPSLHDVFGSYNR PHVVPQTLSSNLDPALVYHPPSKLQYPEGIADAAASKEEEDEERADSPVSSSSSRSDL SSPSFNRDSEFDFQPKGSATGGGGGATAPSFELATPLAMRLEATIKMASIEQESDTGS TVTGKSIATGSKLQRHPSDSERPEKKIPPPLTPPVKQPGVSNILARTGSSGSSSSSPG RQSSQSSLFENFASHAKELVRETTRQSSQEGLLAHVDKHALDEDLDDKMRHTFEKFTL HAKKAAGEASKQALEVSKQAAGVSKNTLEDLTYVGKSTLGDLTKTAKEAATKKGIIKI EEHSMAVANAPPPKSPGSQLATHKQVQQSGGSGGGNNFFSSIGTDFNGLASSTSTMFS GMFGKKNQQKQVPMPHKPASVSAGKGKTGINFDPFPGRKGLVERTPLIKHSGPRQTQE ELTRQQNQERSHSNAENQTFLKDVTNQVLAGEGVGWLKLNRFKKLMEDESYRTLVLSK LNKTLDKKIAPDDHIDDVCVTKPVWKGMLKCVQAIAGGLDVTFSNFGLGGMASVFQLM EVAHTHYWSKEINEGSDMSSSLLSSHAASPMGSRENLRSPSSPNGSHGSALGSEWASP QESRKSSTQLPHGGGPGGSHSGAPVNRRLSSADSQDGQSTTEMFKDMLSQKRSALKNM LTSFDSDAAGSTGALSVVSLGVRLPSSCRSTVSDTEYENTTTSKDSKKSSGNLWSGKS TLSAGFRYTGGHLINTSSSPSPDSPRVYLFEGLLGKDRLNLWNQMQFWEDAFLDAVSQ ERDMIGMDQGPIEMMERYKSLSESERKRLEHDEDRLLSTMLYNLTAILVMLNVTKDEI RRKIRRLLGKSHIGLVYSQEVHNVVDQINNLNGNDIDLKPLGSRLLHRQSFTVHQGTD VNGPLRFMEVRDDGLVLRSVDGTIVERWWYERLVNMTYSPKTKLLCLWRRNGGQTQLH KYYTRKCKELYNCIKEAMERGGTPTNVPELGGEFPVQDMNTGEGGLLQVCLEGVGLLF SNSKFFVRLDHIRKCFTQKGGIFVLEEYNPKTRNLIQRKYQSSMSDQICYSVLCVFSY VAAGQDQKKNPVVITPQIQDIHAQQKQKHQQQQQHQTAPPVSTAPANPTANPSRMGGK SPAGTISIRHTVPMQKPTITMSTVQPQARMPTVTVPVSVPVPVHVPSPNSNPTPPSNP PPNPGKLPQLPPRVPSQPSTESLASISSPPPKIRAPMTAPPGPPPAIPPRTGAIARSG SVPAARSFVRQASANSTPPQYTPQPPPPFVIPKRHSGLARASTLGGSGAAGGGGAAGG SQSQQRASHGSVAAVLQSMPEAEPGYGSGSASASGSGSISGSSSGSGSASGSIAGASP QAHRKH" misc_feature 577..882 /gene="Rab3-GEF" /note="Domain always found upstream of DENN domain, found in a variety of signalling proteins; Region: uDENN; smart00800" /db_xref="CDD:214824" misc_feature 1357..2037 /gene="Rab3-GEF" /note="Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN; Region: DENN; smart00799" /db_xref="CDD:214823" misc_feature 2416..2622 /gene="Rab3-GEF" /note="Domain always found downstream of DENN domain, found in a variety of signalling proteins; Region: dDENN; smart00801" /db_xref="CDD:129037" ORIGIN 1 cattgttcac cattcgacga gaatccaaca agtgcggcat ggaaataccg ttcgtcccac 61 ttcgtgtcac ttcgtctcgc ctcgtgccac tcgcaacggc acacttccag cccccagagc 121 agaggaattt caacaccacc acacacattg cagtggcgcc cgagcaggga cagggtgaaa 181 ggtaatgggg gaatgggttc ggttggcgtc ctttggctta gctgcttggc tcgatggcta 241 gaaaattcag tcacaccacg gccagcgcgc agttagctac agagaaagga aagcaggagc 301 cacaggacac agagctcctt cgtctgcaac tgaccacgag agctgagcaa agaggagcct 361 atatattcct ttttttttgc tgtttgtaca atagaatcga cataaataca gtgattgtcc 421 agtgaatatt ttatattagt gggtgctacg ccatgtcaac agaatgcaac gccctgatag 481 tagaactacc tttaattaac tgaggaaaca acaaacaata actagtgaac taagcaaaca 541 ccatccagga tgtcggacca gcagaaagcc tccctgtgtc cccggctggt ggactacatg 601 gccatcgtgg gtgcccacac gacgcctccg atgccgaaag gactgcaggg cctcaaggcc 661 ccgccggtgc aggtccccga tctgctgcgt cgctaccccc catccgacca tgcggacttc 721 ccactgcccc tggacatggt gtacttttgc cagccggagg gctgcaccag cgtgggaccg 781 cgacgcactg gctccgccat tcgggacatg acctccttcg ttttcgccct gaccgacaag 841 gattcgggca agacgcggta cgggatatgc gtgaacttct accgacccat cgagcggccc 901 agttcggtgg cgggttcggg ggcagttgga caggatcggc cgggaaacgg aggccatgcg 961 ggcggcggag gagcaggtgg agccggcggc ggtggcggac gaggcggccg gagatcgtcg 1021 gccttcaggc gggaatcctg gcgcaagagc atggaacgca gctcggattc ggcatttagc 1081 agcgactaca gaagtaacgt agcgcctagc gattcggacc gtgaactgac ctcgcgtcgc 1141 gattcggacc agcagcgcct ccactcgcac tcgcattcgc accactccca atcgcagcac 1201 caccagtcgc agcaccacca gtcgcacccg tcggcgggtc cggcggtgcc caagctggga 1261 ctgatggccc cctcggcgga ctcggagtcc ggcggcagcc actcgccgtc gccgcgggcc 1321 tcgcgaaagc ggacgaagct gcgcaaccag tcgctcacct cgctgtgcat catctcgcac 1381 cacccgttct tcaccacctt ccgcgagtgc ctcttcatcc tgaagaagct gatcgatgcc 1441 tgcaacgagt cgtcgtcgcc gaagcgagtg ggcgcctccc agaaaatgaa ccgcgacaat 1501 gtgtggacgg tgctgacggg ccatgtcagc gacgcgacac cctcgatcgt cctgcacgat 1561 gtgcgcgaaa tcgagacctg gatcctgcga ctgctctcca cgccggttcc ggtgccggga 1621 tccacacgag tcgaggtgga ggtgctgtcg ccgacggtgc atgagccgct gctgttcgcc 1681 ctgcccgacc acactcgctt ctcgctggtg gacttcccgc tccacctgcc actggagctg 1741 ctcggcgtgg agacctgcct gaaggtgtgg accctgatca tgcaggagaa caaggtgctc 1801 ttccagtcac gcgactacaa cgccctctcc atgtcggtca tggcattcgt cactatgcta 1861 tatccgctgg agtacatgtt ccctgtcatt ccgctcctgc ccacctgcct gagttgtgcg 1921 gagcagctgc tactggcgcc cacgcccttc gtcatcgggg tgcccgcctc gttcctggtc 1981 tacaaaaaga atttcaggct accggatgac atttgggtgg tcgacttgga ctccaccaaa 2041 ctgacgccac cgactggtgg ctacgaggaa ataccaccgc tacctgagcc cgagggcacc 2101 attctgaaga accacctcaa gcaggctatg ctattgatgg atgaagctgg acttggtgca 2161 cttacctcga tgacgtccac caacacggcg gtgtcctcgc aacagctttt gccatcggta 2221 cgggatagtc tccaggaacc accattgctg ggtgtttccc aggtgcgact tccgcttcag 2281 acgccacccc attcggcgca ggccagtcaa aggaactcga tgtcggccca aggaacgatt 2341 agttcccgtc agcccagtcc gatgaactcg cccgcgctca atccattcgt ttacggcacg 2401 gatgtcgatt ccgtggacgt ggcgacgcga gtggcgatgg tccggttttt caatgcccaa 2461 aatacactgg ccaatttcgc cgagcacacg cgtacattgc gcctgtatcc gcgacccgtg 2521 gtcgcatttc agataaacag tttcctacgc tcccggccga gggcctcgca gttcctgaat 2581 caattcgccc ggacgcaggc ggtggagttt ctggccgagt ggtcgctaac gcccacgaat 2641 gtggcctttc tgcgggttca aaccggggtc atggacccca tgcaggtggg cgataagccc 2701 aagtggttcg cccactccct gacccccatt cgattctcgg tctgggacga tggcagctcg 2761 ctgaacggag ctctgcgatc gctgaagcag ctcgagtgcc agccgacgga cgagagtggc 2821 tcggattccg agggagcgga cagcagcagc tcgtcgtaca gttcgctcag tgacttcgtc 2881 tcggaaatgg cctcctcgga tctgtcgccc agcctgcacg atgtcttcgg ctcgtacaat 2941 cgaccgcatg tcgtcccgca gaccctgtcc tccaatttgg atcccgcact ggtttaccat 3001 ccgcccagca agctgcagta cccggagggc attgccgatg cggcggccag caaggaggag 3061 gaggacgagg agcgagccga tagccccgtt tcctcatcct ccagtcgctc cgatctgagt 3121 tcgcccagct ttaatcgcga ttcggaattt gatttccagc caaagggatc agcaactggt 3181 ggtggcggag gagcaactgc acccagtttc gagttggcca caccgctggc catgcggctg 3241 gaggccacca tcaagatggc cagcatcgag caggaatcgg acacgggatc cacggtcacc 3301 ggcaagagca tagccaccgg ttccaagctc cagagacatc ccagtgattc cgagcggccc 3361 gagaagaaga taccgccacc gctaacgcca ccggtgaagc agccgggtgt gagcaatatt 3421 ctcgcccgga ccggcagttc cggctccagt tcgagcagtc ccggtcgcca gagttcccag 3481 agctccctct tcgagaactt tgcctcccat gccaaggagt tggtgcggga gacgacgcgg 3541 cagagcagcc aggagggtct actggcccac gtggacaagc atgcgctgga cgaagatctt 3601 gacgacaaaa tgcgtcatac cttcgaaaag ttcacgctgc acgccaaaaa ggcggccgga 3661 gaggcttcga agcaggctct ggaggtctcc aagcaggcgg ctggggtgag caagaacacg 3721 ctcgaggatc tcacctatgt gggcaagtcg acgctgggcg atctcaccaa gacggccaag 3781 gaggcggcca ccaagaaggg catcatcaag atcgaggagc attcgatggc ggtggccaat 3841 gctccgccgc ccaagtcacc cggctcccaa ctggccaccc acaagcaggt gcagcaaagt 3901 ggcggttcgg gcggtggcaa caacttcttc tcctcgattg gcaccgattt caatggtcta 3961 gcctcatcca catccaccat gttttcgggc atgtttggca aaaagaacca acagaagcag 4021 gttcccatgc cacataagcc ggctagcgtt tccgcgggaa agggcaagac gggcattaac 4081 ttcgatccat ttcccggacg caaaggactc gtggagcgga caccgttgat taagcactcg 4141 ggaccgaggc aaacgcaaga ggagctgacc cgccagcaaa accaggagcg ttcgcatagt 4201 aatgccgaga accagacctt cctcaaggac gtcaccaacc aggtgctcgc tggcgaggga 4261 gtcggttggc tgaagctcaa tcggttcaag aagctcatgg aggacgagtc ctatcgcacg 4321 ctggtcctca gcaagctgaa caagacgttg gacaagaaga tagctccaga tgatcacatt 4381 gacgatgtgt gcgtgacgaa acccgtttgg aagggcatgc tcaagtgcgt ccaggcgata 4441 gccggcggat tggacgtgac cttctcgaac ttcggcctag gcggcatggc ctctgtgttc 4501 caactgatgg aggtggcgca cacgcactac tggagcaagg agataaacga gggcagcgac 4561 atgtcctcca gcctgctctc cagtcacgcc gccagtccga tgggcagtcg ggagaacctg 4621 cgatcgccca gctcaccaaa cggttcccat ggttcggctt tgggcagcga gtgggcctca 4681 ccgcaggagt cacgaaagag ctccacccaa ttgccacacg gtggtggtcc gggtggctcg 4741 cattcgggag ctccggtcaa tcgacggctg tcatcggcgg acagccagga tggccagtca 4801 accaccgaga tgttcaagga catgctgtcg cagaagagaa gtgccttgaa gaacatgctc 4861 acctccttcg actcggatgc cgctggctcc acgggggcgc tttccgttgt cagtctgggc 4921 gttcgcttgc cctccagctg caggtccacg gtctcagaca ccgagtacga aaatacaacc 4981 acttcgaagg attcgaaaaa gagctctggc aatctgtggt ccggaaagtc gacgcttagt 5041 gccggatttc gttataccgg aggacacctg atcaacacct cgtcgtcgcc ctcgccggac 5101 agtccgcggg tctatctctt cgaggggctg ttgggcaagg atcgcttgaa tctctggaac 5161 caaatgcagt tctgggagga tgccttcctg gatgctgtta gtcaggagcg cgatatgatc 5221 ggcatggatc agggtcccat tgagatgatg gagcgctaca aatcgctgag cgaatcggag 5281 cgaaagcggc ttgagcacga tgaggatcgc ttgctatcta cgatgctcta caacctgacg 5341 gccatcctgg tgatgctgaa tgtcaccaag gacgagatcc gacgcaagat tcgtcgcctt 5401 ctgggcaaga gtcacattgg cttggtgtac tcccaggagg tgcacaatgt ggtcgatcag 5461 atcaataatc tgaatggcaa tgatattgac ctaaagcccc tgggctcacg actgctacat 5521 cgccagagct tcaccgtcca ccagggcacc gatgtgaatg gacccctgcg attcatggag 5581 gtgcgggacg atggactggt gctgcgatcg gtggacggca ccattgtgga gcgctggtgg 5641 tacgagcggc tggtcaacat gacctattcg cccaagacca agctgctctg cctgtggcgc 5701 cgcaatggtg gtcagacgca attgcacaag tactacacga gaaagtgcaa ggagctgtac 5761 aactgcatca aggaggccat ggagcgcggc ggtacgccca ccaatgtgcc cgaactgggc 5821 ggcgagtttc cggttcagga catgaacact ggggagggcg gtctgctgca ggtgtgcctc 5881 gagggtgtcg gtttgttgtt ctccaacagc aagttcttcg tgcgattgga tcacatccgc 5941 aagtgcttca cccagaaggg cggcatcttt gtgctggagg agtacaatcc caagacgcgc 6001 aatcttatcc agcggaagta tcagtcgagc atgtccgatc agatttgcta ctcggtgctg 6061 tgcgtcttct cctacgtggc cgccggccag gatcagaaga agaatccggt ggtcatcacg 6121 ccgcagatcc aggacatcca tgcccagcag aagcagaagc accagcagca gcagcagcat 6181 caaaccgcgc ctccagtctc cacggcccca gcaaatccta ccgcaaatcc cagtcgcatg 6241 ggtggcaaat ctccggctgg cactatctcc atacggcaca cggtgcccat gcagaagccc 6301 accatcacca tgtccacggt gcagccgcag gcgaggatgc ccacggtcac ggttccggtt 6361 tcggtaccag ttccagttca tgttccttca ccaaattcaa atcccactcc cccatccaat 6421 ccccctccca atcccggcaa gctgccgcaa ttgccgccac gtgttccatc gcaaccctcg 6481 acggagagcc tggcctccat ctcatcgccg ccgcccaaga tccgcgcacc gatgaccgct 6541 ccaccgggac caccgccggc cataccgccg cgcactggag cgatcgcgcg gagcggttcg 6601 gtgccggcgg cccgatcctt tgtgcgccag gcatcggcga actccacgcc gccgcagtac 6661 acgccgcagc cgccgccgcc ctttgtgatc cccaagcggc acagtggcct ggccagggcc 6721 tccactttgg gaggatcagg agcagcagga ggaggaggag cagcaggagg atcgcagtcg 6781 cagcagcgcg ccagccacgg cagcgtcgcc gctgtgctgc aatcaatgcc ggaggctgag 6841 cccggctatg gatccggttc cgcttccgct tccggttccg gttcgatatc cggctccagt 6901 tccggctccg gttcggcctc gggctccatt gccggcgcct cgccgcaggc ccatcgcaag 6961 cactgacgaa ggagttcgtt cttcaagttt ggaggtggag gaaatccaaa tccaggggct 7021 ggcggcggtg gcggcggaca gatgggcgag gagccccatc cacatcccca tcgcagggac 7081 gtctgccgca ccatctgcat cccctggctg tgatcccggc agtcgaccga ctaaagcggt 7141 tcaccctaaa cgtggctacc atccaaaatt accacattta tgcgcatgac ataaatacag 7201 ccaacttcga taagagagtt cttaaaaata ttttaaaact tgagattcca tataatacta 7261 ttaataattt attccaattt aattttaatt gcaaatttta aacctttccc tgataaattt 7321 aaaacctaaa tttaaagctt tccgaaaatc ctaataattc ctagtaagcc actaaaatac 7381 attacataaa taattttaaa aactgaaaga agttcgcatg tatttagaaa agaaaacaat 7441 cagttctaaa tataaacata tttatgaggc tcaaaaaata gcaaacaaat gatgttaaac 7501 actagcaacg ttttgctgtc tgtttgtaaa tatagcatgt ctactaatca gtcatactag 7561 tagatcataa actaaacaag ccttgcgcat aaacgtggta aaaggaaccc agcattatag 7621 ccatcttctg cttggatccc gaaagcccca tatatagata tatatgtaca tgtaccgtat 7681 ttgagctgta tttactgaac cttattctag ccaaatcata tcattagccg cctctaacta 7741 atcccataga cgaattgttt cctgctaagc tttaaggcag agagcgccaa aacaaaagaa 7801 agaaactcgc ttaaacctac ctaaatagat aatacgagaa agatatatac acagatcggg 7861 acttgacttc attatgggcc cattgaaggg cacaacaaac gaacacaaac ggaaattgaa 7921 ggcaatctag ttagggatat agtatactat accaactaaa tccaaaaaaa aaagaaatat 7981 atatgtgaat atctagcaga caactacgat catgcataaa atataaatat atatatattt 8041 atggtaaagg aatttaacta gttg