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LOCUS XM_044394978 2268 bp mRNA linear INV 09-DEC-2024 mRNA. ACCESSION XM_044394978 VERSION XM_044394978.2 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq; corrected model. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_044394978.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-448 JARPSC010000001.1 1617894-1618341 c 449-450 "NN" 1-2 451-505 JARPSC010000001.1 1617839-1617893 c 506-755 JARPSC010000001.1 1617551-1617800 c 756-806 JARPSC010000001.1 1610573-1610623 c 807-1027 JARPSC010000001.1 1603411-1603631 c 1028-1202 JARPSC010000001.1 1583835-1584009 c 1203-1782 JARPSC010000001.1 1579317-1579896 c 1783-2268 JARPSC010000001.1 1578260-1578745 c FEATURES Location/Qualifiers source 1..2268 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2268 /gene="Vsx2" /note="Visual system homeobox 2; The sequence of the model RefSeq transcript was modified relative to its source genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108058386" CDS 212..2071 /gene="Vsx2" /note="The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon" /codon_start=1 /product="LOW QUALITY PROTEIN: homeobox protein aristaless" /protein_id="XP_044250913.1" /db_xref="GeneID:108058386" /translation="MPQRSPFAIQELLGLAVTAATTATEAPTDLTTTTTTVASAILAK ERQTGSVTSAGTTGTAATTTGATATTTGAIATTTEXQQQQQQQQQHPAQQQHHSPHQQ HHHYREHHQMTMASRMAYFNAHAAVAAAFMPHQLAAAVHHHHQHQHLPHHHHHQAHHP PPPPPTMQHHHHPHHPLLHAQGFPQMKSYAAGAATCLPGSLAPKDFVMESLNGFGVGP NSKKKKKKRRHSRTIFTSYQLEKLEEAFKEAHYPDVYAREMLSLKTELPEDRIQVWFQ NRRAKWRKTEKVWGGSTIMAEYGLYGAMVRHSLPLPDTILKSAKDNDAVAPWLLGMHR KSIEAQSALKDDSGVSDHEDSAGSKSGNSEDLSLNRHRALSSSTESLNVVSPAPSSCT NSVSTAPPNSSTSGYAGGAASSEGGATTSGSSGSPHIEMGSPSPQQQQQVPLYLGGGA PSYHPLMDAANAAGAGAAASSKDFHLIMNTAVAAAAAAAQQQQQQQQQQQQQQPGMHA HNLAAALMEHDPDTFRNNSIACLRAKAQEHQARLLNNGGLFLQVRRFAQGQAPMQVQD PSDIFKLSEEHNNNNIPIPQQHISPAHPTNPNPQSNVKMELTANGTMKNCEEV" misc_feature 890..1063 /gene="Vsx2" /note="Region: Homeodomain; pfam00046" /db_xref="CDD:459649" misc_feature 1781..1831 /gene="Vsx2" /note="OAR motif; Region: OAR; pfam03826" /db_xref="CDD:461067" ORIGIN 1 cctggtgcac attaacgcag gcaacagttt aacgtggaaa ttattgcgaa tttgttgtgt 61 gtttttctgc gatcgcaata acgcagcaaa tcgcgtgcaa cagcaatatt gcaacattgc 121 tttgcttatt ttttttgtga tttttttttg ggggagtacc atgatatttt ttttcatatc 181 tagtcgtagt tttaaataga agcaattaaa aatgccgcaa cgctcgccat ttgccattca 241 agagctgctg ggcctggcgg taacggcagc aacaacagca acagaagcgc caaccgattt 301 gacgacgaca acaacaacgg ttgccagtgc aatattggca aaagagcgcc aaacgggatc 361 agtaacatca gcaggaacaa caggaacagc agcaacaaca acaggagcaa cagcaacaac 421 aacaggagca atagcaacaa caacagaann gcaacagcaa caacagcagc aacagcaaca 481 cccagcgcag cagcaacatc attcacccca ccaacagcac caccattaca gggagcacca 541 ccaaatgacc atggcctcgc gaatggccta cttcaatgcc catgcggcgg ttgcagctgc 601 gtttatgccc caccaactgg ccgcagcggt gcaccaccat catcaacatc agcacctgcc 661 ccaccaccac caccatcaag cgcaccaccc accgccaccg ccgccgacga tgcagcacca 721 ccaccacccg caccacccgc tgctccatgc gcagggattc ccgcagatga aaagttatgc 781 cgcaggagcc gccacatgtt tacccggttc cctggcgccc aaggactttg tgatggaaag 841 cttgaatggc tttggcgtgg gtccgaatag caagaagaag aaaaagaagc gacggcacag 901 ccgcaccata ttcaccagct atcaactgga gaaactggag gaggccttca aggaagccca 961 ttatcccgat gtctatgccc gcgaaatgct atcgctgaag accgaactgc ccgaggatcg 1021 tatacaggtc tggttccaaa atcgtcgggc caagtggcgc aagaccgaga aggtctgggg 1081 tggcagcacg ataatggcgg agtacggact ctatggggcc atggtgcggc actcgctgcc 1141 cctgccggac accatcctca aatcggccaa ggacaacgac gcggtggctc cctggctact 1201 aggcatgcac cgcaaatcga tagaagcgca gtcggcgctc aaggacgatt cgggggtgag 1261 tgaccacgag gattcggcgg gttcgaagtc cggcaattcg gaggatctct ccctcaaccg 1321 ccaccgtgcc ctcagctcct ccaccgaatc gctgaacgtt gtgagtccgg cgcccagcag 1381 ctgcaccaat tccgtttcca cagcgcctcc aaactcctcg acgagcggct atgcgggggg 1441 agcggcctcc tcggagggcg gagccaccac ctccggcagc tccggcagtc cacacatcga 1501 aatgggctcc ccttctcccc agcagcagca acaggtgccg ctctatttgg gcggtggtgc 1561 ccccagttat catcccctca tggacgccgc caatgccgct ggcgcaggag cagcggcctc 1621 cagcaaggac tttcacctga tcatgaacac agccgtggcg gcagcagcag cagctgccca 1681 gcagcagcaa caacaacaac aacaacagca gcaacaacaa cctggcatgc acgcccacaa 1741 tttggccgcc gccctcatgg aacacgatcc ggataccttc aggaataact caatcgcctg 1801 tttgagggcc aaggcgcagg agcaccaggc gcgtcttttg aacaacggag gacttttcct 1861 gcaagtacga cgatttgccc agggccaagc tccgatgcaa gtccaggacc caagtgatat 1921 cttcaagctc agcgaggagc acaacaacaa caacatcccc atcccccagc agcacatttc 1981 ccccgcccat ccaacgaatc caaatccgca atccaatgtc aaaatggagc taacggccaa 2041 cggtacgatg aaaaactgtg aggaggtcta acaaaagctc cgagatgaat tcatttttta 2101 acccaaaatg cacccaaaac caaaccaaaa acaagaaaac ctttttttta ctagacccta 2161 agaaccatta ctcttggcac taccacataa gatctgtaat cgaatagctt gtaaacagtg 2221 gcttggggct actttaagat gtaaaaatac gatatcgtaa tattttta