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LOCUS XM_044394955 3180 bp mRNA linear INV 09-DEC-2024 mRNA. ACCESSION XM_044394955 VERSION XM_044394955.2 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_044394955.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3180 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3180 /gene="Pdcd4" /note="Programmed cell death 4; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108054561" CDS 714..2231 /gene="Pdcd4" /codon_start=1 /product="programmed cell death protein 4" /protein_id="XP_044250890.1" /db_xref="GeneID:108054561" /translation="MEVESNNKRSTNGARHSSHSPAGSDSKESSVERELNGEIQAVEL NGSGHSNGHIKKPLPVEDGRIKRKAKRLIQRQNSGSGGSPNQTNGNGVAAAAAGAAAP PLAINGILPSPGGYVVPHRRWKNSRRSRNLARGRGLPKKGGAGGKGVWGLPGSEALAE VYEDENDPNYDSECNDRNVELREVITEITPEEFFKLAEPIVLEYYEHGDPHEVALSFD EILQGPLREHITSILVEIAMDHKDSQREMTSVLISDLYGRVITGKDIEKGFNMLLANL PDLILDTPEAPTMLGNFMARAVADDCIPPKFVVKAEEELRSLELGEHAEQALRRADSL LHKQVWAHLDNVWGMGGPLRPVKTITKQMELLLKEYISSRDVAEAQRCLRALEVPHYH HELVYEAIVMTLESLSQTTEEAMCELLKQLDLTCLVLPAGMEQGFMRVFDDMADIVLD VPLAYIILDRFVERCNRAGFLTDKIINNVPSRGRKRFVSEGDGGHVKPATLPMRD" misc_feature 1290..1625 /gene="Pdcd4" /note="Domain in DAP-5, eIF4G, MA-3 and other proteins; Region: MA3; smart00544" /db_xref="CDD:214714" misc_feature 1788..2129 /gene="Pdcd4" /note="MA3 domain; Region: MA3; pfam02847" /db_xref="CDD:397128" polyA_site 3180 /gene="Pdcd4" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ttgtgtgtgc catttttgcc attcgaccat tcgaatcaga attcagcggt cttcatcctt 61 ttcgttccaa cataaaaaaa aaataaaaca caaaagttca cacggctcag cgcaaagcag 121 caacagcaac aacagaaaca gcaaggcgaa agagagggaa aggagcagag caggcaacac 181 aacaacaaca atagcagcaa cagctcccca acacgcacaa ctgaatggtt gtgggtgtgc 241 gagtgtgtgt gcgtgtgtga aggagccttt tttttctgtg agccacaaga ttttagtgca 301 ttttgcattt ttgcccactt gctttgctat tgctttgccc cccacgccaa taagagaaag 361 aagcgaaaga gcgaggaaag gagcccacgg aaaagaaaca acaactacaa ctatcaaaca 421 ggctcaggct ccccagtgaa taaaggcagc gcagccgacg tcgacgtcga ctgcagtggg 481 ccaacgttgt tgcagtcgcg tcgtttgttg ttgttgttct tgttcttgct gcagcatcag 541 agagagggag agccagatag cgcaagacag caggagagac agaaaagcac ttagataaaa 601 aacaaagagg acgcacctgg tgcaagagta caaaacccaa aaacccatcc acaaaatcct 661 tgctgtgcat tccaagggga tatcgtaggg agtgagacat catcattgtc actatggaag 721 tggaatcgaa taataagcgc tccaccaacg gcgcccgtca ctcctcccat tcgccggcgg 781 gatccgattc caaggagagt tccgtggagc gggagctgaa cggagagatt caggcggtgg 841 agctgaacgg cagtggccac tcgaacgggc atatcaagaa gccgctgccc gtggaggatg 901 gccggatcaa gcgcaaggcc aagcggctca tccaaagaca gaacagtggc tccggcggca 961 gtcccaatca aacgaatggc aatggagtgg ctgccgcggc tgctggagct gctgccccgc 1021 cgctggccat caacggcatc ctgccctcgc ccggcggcta tgtggtgccc catcgtcgct 1081 ggaagaacag ccggcgatcg aggaatctcg cccgaggccg gggattgccc aagaagggcg 1141 gagccggtgg caagggcgtc tggggattgc ccggctcgga ggctctggcc gaggtgtacg 1201 aggacgagaa cgatcccaac tacgacagcg agtgcaacga tcggaatgtc gagctgcgcg 1261 aggtgatcac ggagattacg cccgaggagt tcttcaagct ggcggagccc attgtcctgg 1321 agtactacga gcacggggat ccgcacgagg tggccctgag cttcgatgag atcctccagg 1381 gtccgctgcg tgaacacata accagtattc tcgtggagat cgccatggat cacaaggatt 1441 cgcagcggga gatgacctcg gtgctgatct cggatctgta cggacgggtt atcaccggca 1501 aggacatcga gaagggcttc aacatgctgc tggccaatct gccggatctc atccttgaca 1561 ctccagaggc gcccaccatg ctgggcaact ttatggcccg tgcggtggcc gacgactgca 1621 ttccgcccaa gtttgtggtg aaggcagagg aggagctccg gagcctcgag ctgggcgagc 1681 atgccgagca ggccctccgt cgcgccgact cgctgctcca caagcaggtg tgggcccatc 1741 tggacaacgt ctggggcatg ggtggcccct tgcgtcccgt gaagacgatc accaagcaga 1801 tggagctgct gctcaaggag tacatatcct cgcgggacgt ggccgaggcc cagcgctgcc 1861 tgcgcgccct cgaggtgccg cactatcatc acgagctcgt ctacgaggcg atcgtcatga 1921 ccctggagtc actcagccag accaccgagg aggccatgtg cgagctgctc aagcagctag 1981 atctcacctg cctggtgctg cccgcgggca tggagcaggg tttcatgcgc gtcttcgatg 2041 acatggcgga catcgttctg gatgtgcccc tggcctatat aatactcgat cgctttgtcg 2101 aacgctgcaa tcgcgccgga ttccttaccg acaagattat taacaatgtg ccatcgcgcg 2161 ggcgcaagcg tttcgtttcg gagggcgatg gcggtcatgt gaagccagct accttgccca 2221 tgcgcgatta aatcgggatt acggggccct tatatgcttc atatgcttat ataacgactc 2281 caactctccc caaggacacc gaaagaagca acaacagagg aaccacaaca acaacaaaac 2341 accaaattac aaaaaaaaaa ggagaaaatg caaagaatac aaaaacaatt gataagaaaa 2401 gacgaaatgg agaatttgtc gcaaatcttg atagaaagaa cctaccctca acggtcacac 2461 acacacaaaa aacaaacaat caatcggaat ttgatctccg tttaaactat attcataatt 2521 ataaaaccta cataaacacc tacaacgtat atctaaccta catgtaaaac taaaaacgta 2581 aagcgaaagt atattttaaa gatttgtaaa aacgagatga gtgaaaaaaa aataagatca 2641 caaaccaaga gaatccagaa tgaggatcag gatactaatg agcaacgatg cagcatttgt 2701 tgtgggtttt cttttgagtt gggatcatcg catcgcatat gacgaaggat ggttggagaa 2761 ccagaacagc agcgtactta gcacgctgcg catgccactt gaaagcaaag catattactt 2821 atacgaaact gttacacacg acacactcgt acacccctga gaaattggtt gaaaagttgt 2881 atgaaattta tgtttaacca ccactgttat gcagccaaaa cagcacacaa attccattga 2941 tttattgatt tgaaattcag caaaacaaaa aaaaacccat tttaattact tcctaagcgc 3001 atcgtcatga tttctttcct taattttttg taactgtgtg ttagaagact aacatagtta 3061 agcttaattt tacatattac gtacgtttac caacggattc atctctttcc cgctgctata 3121 tctttttttt ttttgattgt ttggattgaa taaacgttgc attttataag ataagaaaaa