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LOCUS XM_044394818 3992 bp mRNA linear INV 09-DEC-2024 (LOC108058435), transcript variant X3, mRNA. ACCESSION XM_044394818 VERSION XM_044394818.2 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_044394818.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3992 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3992 /gene="LOC108058435" /note="RNA-binding protein 25; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108058435" CDS 334..3378 /gene="LOC108058435" /codon_start=1 /product="RNA-binding protein 25 isoform X1" /protein_id="XP_044250753.1" /db_xref="GeneID:108058435" /translation="MSYPPRAPMPPYMNASIPPPHMMQNMGNPPQRNFRNSATISSQP TVYHRPPEPQPQFRGPIITVFVGNISERVPEALLKRILATCGVVINWKRVSTFGFCEF DGPIAAMRAVRLLSEMEIDGKKLVAKVDAKNKVLIEDYKEQECKNGDRSNSVDEKTED EYAISQMHEFLEEHKHEFDGFDGSNRPDLYGSSSRNKKTRREDDIKIKVLNDNALEEE KRNLISSEIGKFRMRAEADEHRKELEKEKEKEKLAASKEKERDKERKKHQREKERKSS TSKSGSSSGAAATTEKAAASATDNPEAAEKSDKDPAAAVVKDAKEPKEPKESSSSSTG RSASSRKDPPAAESTQKERRSDSKETRRRRSKSRSKDRERERERERELRELRDKERER ERERERERERERNEMRERERNEMRERERERERERERERDREREREREREEKLSAKPVR DSRREKEMEDELRERKKAEKKAREKEAAYQVRLSNWEIREKRKSKENEKYRLKELLRQ EERESDAKRLKEFVEDYDDERDDSLYYRGRELQQRLAERVREADADSKDREKEADELA ELKSKFFSGEYENPSLEFEKARREIEKLYEPRILINVNLEAAAATAAVHQRKQTSAAS ATGEGAAKELKSQQLDSYDPDMAGMNDDDSMSNDDRGGGSLADTASNASDGGYAAKNN NNDNKSLSNSLSRQNSESRDSLAQIHTPTQSAMHANDQDALLPSATPPMTMPLISLTL GNNLKMKKKIEATGVFVNDDDNDENINPKKRKLVPLDYDDNMSNTTPSSHPASNAGGL GNSSSSSGSNHNNNSSSSSADRQSSAVSAATAAAAAVSQKIAQSSATGSGSNTSGGKN NGNGKQSSSGSSKHGKNEAAASASSGADAAAGTNTKKDENGAKVYDEKRRHIKSIIDR IPTQKEELFNYKLDRNEIDSGLMERKIRPWINKKIIEYIGEPEPTLVDFICSKVLAGS PPQSILDDVQMVLDEEAEVFVVKMWRLLIYELDAKKSGIAGK" misc_feature 520..744 /gene="LOC108058435" /note="RNA recognition motif (RRM) found in eukaryotic RNA-binding protein 25 and similar proteins; Region: RRM_RBM25; cd12446" /db_xref="CDD:409880" misc_feature 3130..3345 /gene="LOC108058435" /note="domain in splicing factors; Region: PWI; smart00311" /db_xref="CDD:214609" polyA_site 3992 /gene="LOC108058435" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ctaccgatag cagcttgcta gcagctacca tctctagacc agagcagcgg ccgcagaaaa 61 aaaaggagat tcggtaattt acgcgtggat ttagcacgcg ccgtgaaccc agcagttgca 121 gcaggctcag cccagccgac ccgagaccct tttagttatc cttgcgggct cgcagctcca 181 ggacgaccac caaccgcact cacatttgcc actccgtgtg gcgtttgcgc ccatccgtgt 241 gtgtgtgtgt gtgtgctggc gtgtatgtgt gcctgcctgt cagtgcagtt tgcgtgacac 301 aaaggatacg cgggcggaac tgaaacgcac aagatgtcct acccaccgcg ggcgcccatg 361 ccgccctaca tgaatgcatc cataccgccg ccgcacatga tgcagaacat gggcaatccg 421 ccgcaaagga actttcgcaa ctcggcgacc atcagctcac agccgacagt ctaccatcgt 481 ccgccggagc cgcagccgca gttccgcggc cccatcatca ccgtcttcgt gggcaacatc 541 agcgaacgcg tcccggaggc gctgctcaaa cgcatcctgg ccacctgcgg cgtggtgatc 601 aactggaagc gggtatccac attcggcttc tgcgagttcg acggacccat tgcagccatg 661 cgggctgtgc gcctgctcag cgagatggag atcgatggca agaagctggt ggccaaggtg 721 gatgccaaga acaaggtgct catcgaggac tacaaggagc aggagtgcaa gaacggcgac 781 cgctccaatt cggtggacga gaagaccgag gacgagtacg ccatcagcca gatgcacgag 841 tttctcgagg agcacaagca cgagttcgac ggcttcgacg gcagcaatcg gcccgatctg 901 tacggcagca gcagtcgcaa caagaagacg cgccgcgagg acgacatcaa gatcaaggtg 961 ctgaacgaca atgctttgga ggaggagaag cgcaatctga ttagcagcga gattggaaag 1021 tttcggatgc gcgccgaggc cgacgagcac cgcaaggagc tggagaagga gaaggaaaag 1081 gagaagctgg cagccagcaa ggagaaggag cgcgacaagg agcgcaagaa gcatcaacgc 1141 gaaaaggagc gcaagtcctc gaccagcaaa tcgggtagtt catccggggc agcggccacc 1201 acagaaaaag cagcggcttc agctaccgat aaccccgaag cagcggaaaa gtcggacaaa 1261 gatcccgctg ccgctgtcgt caaggatgcc aaggaaccga aagaacccaa ggaatcctca 1321 tcctcatcga ccggacgcag tgccagcagt cgcaaggatc ctcccgccgc ggagagtaca 1381 cagaaggagc ggcgctcgga ttccaaggag acgcgtcgcc gtcgctccaa gtcccgctcc 1441 aaggatcgcg agcgggagcg ggaacgcgag cgcgagctgc gtgagctgcg cgacaaggag 1501 cgcgagcgag aacgcgaaag ggaacgcgag cgtgagcgcg aacgcaacga gatgcgtgag 1561 cgagagcgca acgagatgag ggagcgcgaa cgggaacgcg aaagagagcg cgagcgcgag 1621 cgagaccgag aacgcgagcg ggagcgggag cgcgaggaaa agctgtccgc aaagccagtg 1681 cgcgattcgc ggcgcgaaaa ggagatggag gacgagctgc gggagcgcaa gaaggccgag 1741 aagaaggcgc gcgagaagga ggccgcctac caggtgcgcc tgtccaactg ggagatacgc 1801 gagaagcgca agtccaagga aaatgagaag taccgcctta aggagctgct gcggcaggag 1861 gaacgcgaga gcgacgccaa gcgactgaag gagtttgtcg aggactacga cgatgagcgc 1921 gacgattcgc tgtattatcg cggccgcgag ctgcagcagc gtttggcgga gcgagtgcgt 1981 gaggcggatg ccgattccaa ggatcgcgag aaggaggccg acgaactggc cgagctcaag 2041 tcgaagttct ttagcggcga gtacgagaat ccctcgctgg agttcgagaa ggcgcgccgc 2101 gagatcgaga agctctacga gccgcgcatt ctgatcaatg tcaacctgga agcggcggcg 2161 gccacagcgg ccgttcacca gcgcaagcag acttccgccg cctcggcgac gggcgaaggt 2221 gctgctaagg agctaaagag ccagcagctg gacagctatg atcccgatat ggccggcatg 2281 aacgacgacg actccatgtc gaacgatgat cgtggcggcg gctccttggc cgatacagcc 2341 tccaatgcca gcgatggtgg ctatgcggcg aagaacaaca ataacgataa taagtcactg 2401 tcgaacagtt tgagccggca gaacagtgag tccagggatt cgctggccca gattcatacg 2461 cccacgcaga gtgccatgca tgcgaatgat caggatgccc tgctgccctc cgccacgccg 2521 cccatgacca tgcccctcat ctcgctgacg ctgggcaaca acctcaagat gaagaagaag 2581 atcgaggcca cgggcgtgtt tgtgaacgac gacgataacg atgagaatat caatcccaag 2641 aagcgcaagc tggtgccgct agactacgat gacaacatga gcaacaccac accttcttcc 2701 catccggcca gcaatgccgg cggattggga aatagcagca gcagcagcgg cagcaatcac 2761 aacaacaaca gcagcagcag ctcggcggat cgccaaagct ccgccgtatc ggcggccacc 2821 gctgcagccg ctgccgttag ccagaagatt gcccaatcct ccgcaacggg ctcgggatca 2881 aatacttcgg gtggcaagaa caacggcaac ggcaaacaga gtagcagcgg cagcagcaaa 2941 catggtaaga atgaggcagc tgcatctgcg agcagtggcg cagatgctgc cgccggtaca 3001 aacaccaaaa aggatgagaa tggtgctaag gtgtatgatg aaaaacggcg gcatataaaa 3061 agcattattg acaggatacc cacgcaaaag gaggagctat ttaattataa gctcgaccgc 3121 aacgagattg acagcggtct aatggaacgc aagatacgtc catggatcaa taagaaaatc 3181 atcgagtata tcggtgagcc ggagccgacg ctagtggact ttatatgttc caaagtgttg 3241 gccggcagtc cgccgcagag tatcttggac gatgtgcaaa tggtactcga cgaggaggcg 3301 gaggtgtttg tggtcaagat gtggcgactg ctcatctacg aactggacgc caagaagagc 3361 ggcattgcgg ggaagtagaa cgatgacgat gatccgcact gatcaccggg ggaaaataac 3421 tggggcgggg agcgggtgca gatcgaggga tcgaacgaga ggagctgctg cgcgaatata 3481 gactctaagt tactttatgc aacttacttt gcgattacac acacaacttt gtacataaaa 3541 ggcgtgctcc cgaaattgtt gctaccgcca aatgtccagg tttgttttat aagcttcgac 3601 gaaacttctc gtgcaaatca aatcaaaaag aaaatttatg taaaacgaaa atcggaagca 3661 aaagcgcagc ctcctccctc aatgatttct caatttctca ccgtgttagc gttaattgct 3721 aaaattaatc atcgattact gtaaatacac actaaactca cttataaatt tacaccagca 3781 gaaacaaaca agcgaaaaaa gaaagccgta catagacaca taaaagcgta gcccatgtac 3841 aattcagttg gtttctgatc caattctccc cctttatttg ttgcgatttc gaaaatcgat 3901 ttccatctac gcaacagctc tttttttcga aaaacgagcg caaacagaaa actgtcttca 3961 ttttaataaa acaatgaaaa gaaaattcaa aa