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LOCUS XM_044394393 6003 bp mRNA linear INV 09-DEC-2024 (LOC108060326), mRNA. ACCESSION XM_044394393 VERSION XM_044394393.2 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq; corrected model. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_044394393.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## internal stop codons :: corrected 2 genomic stop codon ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..6003 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6003 /gene="LOC108060326" /note="uncharacterized LOC108060326; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108060326" CDS 1..2262 /gene="LOC108060326" /note="The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS: substituted 2 bases at 2 genomic stop codons" /codon_start=1 /transl_except=(pos:1453..1455,aa:OTHER) /transl_except=(pos:2143..2145,aa:OTHER) /product="LOW QUALITY PROTEIN: uncharacterized protein" /protein_id="XP_044250328.2" /db_xref="GeneID:108060326" /translation="MNKKSPLPLAAFLGSDGSGGSGGNCAASGSSNVAATAAAAAAAA NGSGGRVGGRQTSSAGGSSVGGGSKSDKREAGGGGGSLCGCQKAPKSHCISATGVLLL VLLYTAMGSIVFVTLEGELEDGGTLETAVAASKPYPRTEIANADIRSRTVDRLWMITE DLNILYKENWTRLAAQEVQLFQDTLLRAVRQSKVYPPGGIQLNAPTHKWTYASAFLYS LTLITTIGYGGISPRTQWGRVAALVYALFGIPIVLLYLSAMGEALSAGMRCLFRRQRV KGGPGGGGGGGGGGGGGSGIGGGGGGRKSDKNKSQGHYGAGGGHQKLHQYGLYQQQQQ AQQQSQQQQQSQQQSQQQQSQSQGKKSSSSNRRNSPSVPISICVCVLLCYVSSGAILF HKLQNWSVLESLYFCFTSLGTIGFGEMAPNGSIALYTASAYILVGMAVVAMCFSLIQT EIVLWLRRFSVQDHVMPKAEELALVTVAVTPKPSXQRPSADPGVGLNLGPAQNTLGQH QTMFFGPAHTLTQYSSLPRRSHLQGGGGHGGSAFQRNTPIRRSTGIPEHHLEYFVPRS ISEFNLSGVGDLALPPPRRYSPNMMGGGGGGMNMGMNMGMGMNMGMGMGMGMNMGPPM PHGLQLGPPQTLLCSATPTVQQQQQPPPPAQLQIVTLKPRSEKMVTFEDESKQAVGGG VTGGAGGATPPHCPHGVPTTPRKSQPVGDIFMXPGAQDEAAQLDAAMRLRDSIDDALC PKAGPAPGEVIRV" misc_feature <622..792 /gene="LOC108060326" /note="Ion channel; Region: Ion_trans_2; pfam07885" /db_xref="CDD:462301" misc_feature 1138..1359 /gene="LOC108060326" /note="Ion channel; Region: Ion_trans_2; pfam07885" /db_xref="CDD:462301" ORIGIN 1 atgaacaaga agtcgccact gccgctggcg gcttttctcg gcagcgatgg cagcggcggc 61 agcggaggaa actgtgccgc cagcggcagc agcaatgttg cagccacagc agcagcggca 121 gcggcagcag ccaacggttc cggcggacgc gtcggcggtc ggcaaacctc atcggcgggc 181 ggatcgtcgg tcggcggcgg ctccaagtcg gacaaacgcg aggcgggcgg cgggggcggc 241 agtctgtgcg gctgccaaaa ggcccccaag tcgcactgca tatcagcaac aggcgtgctt 301 ctgttggtgc tgctctacac cgccatgggc tccattgtct tcgtgaccct cgagggggaa 361 ctggaggatg ggggcaccct ggaaaccgct gtggcagcct ctaagcccta tccccgcacc 421 gaaatagcca acgccgatat acgatccagg acggtggatc gcctgtggat gataacggag 481 gacctgaata ttttgtacaa ggagaactgg acccgcctcg ccgcccaaga ggtgcaactg 541 ttccaggaca ctttgctgcg ggcggtgcgc cagtcgaagg tttatccccc cggcggcatc 601 cagctgaatg caccgacaca caaatggacc tacgcctcgg cctttctcta ctccctgaca 661 ttaattacga cgataggcta cggcggcatt tcaccccgga cgcagtgggg tcgtgtggca 721 gccttggtct acgccctctt cgggattcct atcgtcctgc tctacctgtc cgccatgggc 781 gaggcgctct cggcgggcat gcgctgcctg ttccggcgcc agcgggtgaa aggaggacca 841 ggaggaggag gtggaggcgg tggcggagga ggtggaggct cgggaatcgg cggtggaggc 901 ggcggacgaa agtcggacaa gaacaaaagc caggggcact acggtgctgg tggtggtcac 961 cagaagctcc atcaatacgg tttataccaa cagcaacagc aggctcaaca gcaatcgcaa 1021 cagcaacagc aatcgcaaca gcagtcgcaa cagcagcaat cgcaatcgca gggcaagaaa 1081 tcctcctcct caaatcgccg caattcgccc agtgttccca tctccatctg cgtttgcgtc 1141 ctcctctgct acgtgagcag tggagccatc ctctttcaca aactgcagaa ctggagtgtc 1201 ctggaatccc tgtacttctg cttcacctcg ctgggaacca ttggctttgg cgaaatggcg 1261 cccaatggat cgatcgcctt gtatacagcc tccgcctaca ttctggtggg catggccgtg 1321 gtggccatgt gctttagcct aatccaaacg gaaattgtcc tgtggctgcg ccgcttcagt 1381 gtgcaggatc atgtgatgcc caaggccgag gagctggccc tcgtcacggt ggctgtgacg 1441 ccgaaaccct cctgacagcg acccagtgcg gatcctggag tgggcttgaa cctgggaccc 1501 gcgcagaaca cactgggcca gcatcagacc atgttctttg gccccgccca cacgctcacc 1561 cagtacagct ccctgccgcg caggagtcat ctgcagggag gaggaggcca tggaggatcc 1621 gccttccaga ggaacacgcc catccggcga tccacgggca taccggagca ccatctggag 1681 tattttgtgc cgcgcagcat cagtgagttc aatctctccg gtgtgggtga tcttgccctg 1741 ccgccacccc gcagatattc acccaatatg atgggtggtg gcggtggtgg gatgaatatg 1801 ggaatgaata tgggcatggg aatgaatatg ggcatgggca tgggaatggg catgaatatg 1861 ggtccaccca tgccacatgg cctccaattg ggtccacccc agacgctgct ctgctcggcc 1921 acgcccactg tccagcaaca gcagcagcct cctccgccgg ctcagctgca gattgtgacc 1981 ctaaagccgc gcagcgagaa gatggtgacc ttcgaggatg agtcaaagca ggcggttgga 2041 ggaggagtca ctggaggagc aggaggagca accccgccgc attgcccgca tggagtgccg 2101 accacaccga ggaaatcgca gccagtgggc gatatattca tgtgaccagg agcccaggac 2161 gaggcggccc aactggatgc ggccatgcga ttgagggaca gcatcgatga tgcactgtgt 2221 ccaaaggcgg gaccggcgcc aggtgaagtg atacgtgtct aaggaaaagg gaaaacccaa 2281 ggaaaaacac tcacacaagc acaaacacac acactgtaag taaatgcaca aaaaaaaaac 2341 ctaactcttt tccaaagaac aaaaaaaaag tataaaggtc atatgacact aatttagaat 2401 agagcttgat ataatcgata taattttttg ctattctcga tacttaaagg gattttatcc 2461 ttgacaaagt attaatattg tgaaaatatc gaaaatatcg attattttta gggtaaacac 2521 tttttaaata tcgatacata gcaaactatc gaaatttttg aagctctagt ttacaatggg 2581 atttgttatt atatatttgt tataacatct gtgtatatag aaattcataa taatgagctt 2641 ttcttacttt tttaaaacca gtgtcatatg gccataggaa aaaaagcctt ctttcatttc 2701 gaagaaaaaa aggatcatag tcatatgact cctgtcttaa gttgtaatct gtttaaaaga 2761 aaactcatag caacctttag catatgtgta tatagaaatt cataaaacgt tcttgagcta 2821 aagaccattt tgtctctccg ggttgcaatg agtttttctt tcttttttta aagccagtgt 2881 catatggcca taggaaaaaa gaaacatagc ccactttcga gggcctctct acttgaaact 2941 taaagttcat ggtgttttgt caagcataca agagtaaata aaaacattga gctaatattt 3001 attattatgt gtgtaaatat agcaaacaaa aacaaagaca aacaactaaa gttgcgacag 3061 aatgagagag agtgaattaa aatttaaatg aaaattaaaa ttctaaatga taaatgataa 3121 atgcataaat aattgagggc gttttacggt taatgccgta aagcacgaat accggaatta 3181 ataaatacac acaaacgcac acgcacccac acaactatga ataataaata gtgcgtgtga 3241 gtgggcgtgg cattagaggg gcggcaagta gagcaaacaa aatgcaaatg aaaatgaaaa 3301 tgacaaattg tataaatagc aaaggacaaa gtttatttaa gcgatttgtt agttagttgc 3361 tctgcatttt ttttttgagc cacaaaattt caattagttt tatttattta tttttttttt 3421 tttgtgagga aaaatataaa tttccggaag gcatatactt ttttatatat atttgagaac 3481 attttctgtt attcaaactg tgccaatatt tatgtgctct tttttctata aatgtcttta 3541 tagaaaagtt aatacaatac aataaatgtg actttttctt accaactgtt atactgtgcc 3601 aagttaaatg tgaaagaaaa cgaaagccaa taattgtaaa tgttgtttta attcataata 3661 caaacaaaaa tccaactgtt gtatatgtat actctgtact ttatgctcaa agtgttaagt 3721 gtgtatatga atgtagaata tatataattg tgccaaaagt aaaagccgaa agtattgtgg 3781 ttaatacctt taaaagtgaa aaggaaagcc atcaacgaat taccaacgat ttagcgctaa 3841 aacttcggtc gctttttagc catgacgtta gccatcctgg ttttgcatca ttctcgaatt 3901 tcgaattcga atttcaaacc cgcccccact ggcaattagg tttaaatact ttttaaatgc 3961 attttgattg taggtaattg agcgcgtgaa tggccatttg ttgtttgttt ctgtttctgt 4021 tggttttggc cttgttttct gtttttctgt tagctgtttt gtattttctg tgacaggaca 4081 ttccaattgg agggctgtca agcgagcgga gctcatttgt tggtttgaat tttttatttt 4141 ctcccgtttt gcggcatttt catttaaaat aaattcaatt ttgagcgaac gcccaccgag 4201 tgggcgtggc atttgttaat ttttgccata ttcaatttgt ggcattcaat taaaatagtg 4261 aaattaaaaa acagataggc taggaaattg ctcgtaaagc atagcaaaaa aaaaatgaat 4321 aaaaataagg acaaccttaa aactaattgt catagcctaa gccaattcag atatatgtct 4381 atgtagttta taactaacta actaacagcc aaaacggtat ggtaatggtt aaacaaaaag 4441 cgataaaaca aatattgaaa ttaagccaat gtaattaaat taagtccact tcaacacgca 4501 ttcaaaaaca cacacagata caaaaacaca cacacacaca gaaccacaga caaattaatg 4561 ccatcaagta aacatagaaa aactaaatgt aacgatactg atagtatttt tttttattgt 4621 caaattccta gcacggtaag ttgaactttt aggctaaccg catcgcatat atggatggca 4681 gttaaggata aattactcta attccacata tgtactccta gtccactaga tacatataca 4741 tatgcatata tacatacata tagatatgta gccgtacaca aaacgaaact aatctagcat 4801 tgagaaaggc aaataagaaa tagcaagtaa gaaataagaa ataccgcagt tcgcatcata 4861 taaatgtata caaaccaaac atctctctct ctatatacag aatatatata tacaagccca 4921 accaaaaaaa gaaaggagaa gaataaatac atcatgaaca atttagtcaa aaatcaacaa 4981 ctctatgttt gttttttcac ttgcggccta agtttgcgga tggtctttag aagtctttaa 5041 aaggcattta taaggttttt tctttgttta tggatacaaa tttatcggca tttataaagg 5101 aatattattt gtttatggga agtgaataat cgatcttgta atctacagat aaatcatcat 5161 tcggaactat ccccagtgta catatactcc tacacacatg cggagaggta ggaaaaccga 5221 aggcccctgt cccacttggc catcccatgg cgcatcctgg ccaactcccg aggcctgaca 5281 ccaatactaa tgcgtgcgat taacattcgg aatggtcggc ttcggcttct tcttcttctg 5341 cttctgttcc cagacggagc agagatgaga tggtagtggt ggtgtggcca ggcgaaagag 5401 aaagagggaa agagagggaa gacttctcgg aaaatcggca ggcaattggc atggacacgg 5461 ccaaggggtt tggtttgttg gggtttgggc caaatactat ggccataacc cgtcgtcatc 5521 gtggagcggc ggacacggtc agatggctgc ggtacatgtg tatctgtgtc cgtatatttc 5581 cacaccccct cacccacaca catatgtata atctaagcca acacgtacgc ccacgcatac 5641 acacggctgc atatgtttgt tataagtccc ccctgcaaat atgcgataaa ctacttgcca 5701 ccttgtgtgt gtgtgtgtgt tcgtgggtag gtaggtggta ggtgatttca ggacccccga 5761 aatggtgtcg gctacacgaa aaatggcggc atgtcctgtc ttgttgccac aacgtgtgtc 5821 tttcgatccg gcggatggca aagtggcaaa gtggcaaagt ggcaagagga accggaaatg 5881 gccagggatg gcaaatagcg cggcgccgat tcaattacca agtttcctgt ttcacttttt 5941 agttgagtca atttacgagc tgtttttgta actattttgt aactactaaa cattaaaata 6001 aaa