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LOCUS XM_044394234 9070 bp mRNA linear INV 09-DEC-2024 calcium-activated potassium channel (SK), transcript variant X6, mRNA. ACCESSION XM_044394234 VERSION XM_044394234.2 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_044394234.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..9070 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..9070 /gene="SK" /note="small conductance calcium-activated potassium channel; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108058158" CDS 714..3641 /gene="SK" /codon_start=1 /product="small conductance calcium-activated potassium channel protein isoform X6" /protein_id="XP_044250169.1" /db_xref="GeneID:108058158" /translation="MSIQKLNDTTNSGYVSSEETDSLLVSSSNPSKGGGRTALLRQVK SSSTNGPTTGASTSSSGSVTGSGTGTGSGSGGGSGSVSASGSNSTAGGGTGASKPTLM RQDRTSTYLTSPQQSQHVRMGSEESMRGGGGGGGGGATAHDEDVEQGLQVRSSIVPDI EVHEEDQERGSTTTTTTITTNNQQPTISIMNLSLKPGESHSHSHSSSPGSHPNLGTSS YQNLASSIPPSVPSRCRACRNCSRRASTTPTTLIDRSASRDSVKSAFQQGNLSGSMAI CISNSALPQQQQQQQYHLQQQQHYQLQQQHLQHQQHLQQQQQQQVPPVLITSSPTNGS RIIRQSSQPESSSTAICCGPHSACVGHAHSHSHTVPNVSLKQLRESSGDGIAGIAADS LRINGGMRPFKQGVLLMPRTLSDSRKLRLRRAFTEATNETLQCSKMLRKPASTLSIPG SMKTPSIANREQISSGCNEEAAEALVGIHSDYPRYEMYMEERALTGGNTSRKPSTNSA KHKPNVGYRLGKRKALFEKRKRISDYALVMGMFGIIVMVIENELSSAGVYTKASFYST ALKTLISVSTVILLGLIVAYHALEVQVRLFMIDNCADDWRIAMTWQRISQIGLELFIC AIHPIPGEYYFQWTTKLANKNKTIGTEMVPYDVALSLPMFLRLYLICRVMLLHSKLFT DASSRSIGALNRINFNTRFVLKTLMTICPGTVLLVFMVSLWIIASWTLRQCERFHDEE HANLLNAMWLIAITFLSVGFGDIVPNTYCGRGIAVSTGIMGAGCTALLVAVVSRKLEL TRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRVNPGRVRTHQRKFLL AIYALRKVKMDQRKLMDNANTITDMAKTQNTVYEIISDMSSRQDAIEERLTNLEDKMQ SIQEHMESLPDLLSRCLTQHQERIEQRRNFLHPDTAAVAPIQAPTPQSMFNAAPMLFP HSS" misc_feature 2265..2603 /gene="SK" /note="Calcium-activated SK potassium channel; Region: SK_channel; pfam03530" /db_xref="CDD:460958" misc_feature 2865..3104 /gene="SK" /note="Ion channel; Region: Ion_trans_2; pfam07885" /db_xref="CDD:462301" misc_feature 3144..3368 /gene="SK" /note="Calmodulin binding domain; Region: CaMBD; pfam02888" /db_xref="CDD:460739" polyA_site 9070 /gene="SK" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 caaacaacac taacggaaac atcaacgtga aagcgagacg gacgccctcc gtcccgttat 61 atgctgtgtc tgtctgtctg tctgtgtgtt gagagttcta cgtcgcgcac tccaaaaaaa 121 aaaaaaacca aaaaaaaaaa tcaaaaactt taacactcgc atacacactg gcacacacaa 181 acatacacac acatacatta atatatatag ttaaaaaaaa attatataca aaaagaaaag 241 aagtgcaaga aaaataagcg cccactgcgg ccaatggaaa tgccaaagaa aatgcagcag 301 caacaaattc gacaacaaac gcaaattcta cagcaacaac aacaacaaca agcacagcca 361 cagcagcaac aactgcagtt ccccaataca taggtccacc gattttccgt ctttgtcgcg 421 cgcgttcaca cacacaaaca cagtcacaca ctgggacaca tgcatgtgca taaatggcaa 481 tatggacgaa gagcagcagc agcatttgcc ttgtattggt ataccagcac agtgacacgc 541 gcgtgccaaa tattgccgat tttatcacac gaacaacaac aacaacaaca actgcaacaa 601 cagcaacacc agcgggacca gctattaact aaaggagcca ttacaacaac aaagaccata 661 gcaacaacaa caagaacaac gaacattgct ggaaggcgtc gcaaaatatc aaaatgtcaa 721 ttcagaagct aaacgacacc accaactcgg gctacgtgag ttccgaggag acggactcgc 781 tgctggtgag cagctcgaat ccctccaagg ggggcggccg gacggctctg ctgcgccagg 841 tgaagagtag ctccacgaat ggcccgacga cgggggcatc cacctcgtcg tcgggctcgg 901 tgacgggatc gggaacagga actggttctg gttccggtgg aggatcagga tctgtatcgg 961 catcgggctc gaattcgaca gccggcggag gaactggggc ttccaagcca acattaatgc 1021 gccaggatcg cacttccaca tacctaacga gtccccagca atcgcagcat gtgcgaatgg 1081 gctccgagga gagtatgaga ggtggaggag gaggaggcgg aggaggagcc accgcccacg 1141 acgaggatgt ggagcaggga ctgcaggtcc gcagcagcat agtgcctgac attgaagtac 1201 acgaagagga ccaagaaagg ggatcgacaa cgaccacgac cacgatcacg accaataacc 1261 aacaaccgac catatcaatt atgaatttaa gcctgaagcc cggcgagagc catagccata 1321 gccacagctc cagcccgggc agtcatccca acttgggcac ctcatcatat cagaacctgg 1381 cctcgagcat accgcccagt gtgcccagtc gctgccgggc ctgtcgcaat tgcagccgac 1441 gtgcttccac cacgcccacc accctcatcg atcgctccgc ctcccgcgat agtgtgaaaa 1501 gtgccttcca gcagggcaat ctcagtggct cgatggccat ttgtatatcg aactccgcgc 1561 tgccgcaaca gcagcagcag cagcaatatc acctgcaaca gcagcaacac tatcaattgc 1621 agcagcaaca cctgcagcat cagcaacatc tgcagcagca gcagcagcaa caggtgccgc 1681 ccgttttgat cacctcatcg ccaacgaacg gatcccggat tatacggcag agctcacagc 1741 cggaatcgag cagcacggcg atctgctgcg gaccccattc cgcctgcgtc ggccacgccc 1801 actcgcactc gcacacggtg cccaatgtct cgctgaagca actgcgcgaa agttccggcg 1861 atggaatcgc gggcattgca gccgactccc tgcggatcaa tgggggcatg cggcccttca 1921 agcagggcgt tcttctaatg cctcgcacat tgtctgatag ccgaaagttg cgccttcgca 1981 gagccttcac cgaggccact aacgaaacgc tccaatgctc caaaatgctc cgcaaaccgg 2041 cgtcgacact ctcaattcct ggctcgatga aaacaccttc cattgcgaac cgggaacaga 2101 tctcatctgg atgcaacgaa gaagcggccg aggcactagt gggtatccac tcagactacc 2161 ctaggtatga aatgtatatg gaagaacgtg ctcttactgg cggcaatacg tccaggaagc 2221 catcaacaaa ctcggccaaa cacaaaccca atgtgggcta tcgcctgggc aagaggaaag 2281 ccctcttcga gaagcgcaaa cggatcagcg attacgccct ggtcatgggc atgttcggga 2341 tcatcgtgat ggtaatcgaa aacgagctga gcagtgccgg tgtctacaca aaggcatcgt 2401 tctactcgac agcgttaaaa accttaatat ctgtttcgac tgtgattctt ttaggactta 2461 tagtagctta ccatgctttg gaagtgcagg tgagattatt catgatagat aactgcgccg 2521 acgattggag gatcgcaatg acatggcaac gaattagtca aatagggtta gaacttttta 2581 tatgcgctat acatccaatt cctggcgaat actatttcca gtggacgacg aaattggcca 2641 ataagaataa aacaattggc accgaaatgg tgccatatga cgtagcttta tcattaccta 2701 tgttccttcg attatattta atctgccgcg taatgctgct gcattcaaag ctattcacag 2761 acgcatcatc acggagcatt ggcgctctca ataggattaa ttttaacaca agattcgttt 2821 taaaaactct aatgacaata tgcccgggaa cggttctatt ggtcttcatg gtctcgctgt 2881 ggatcatcgc atcctggacg ctgcgtcagt gcgaaagatt tcatgatgaa gaacatgcga 2941 atcttttgaa tgcaatgtgg ctgatagcga taacattttt gagtgttggt ttcggtgata 3001 ttgttccgaa tacgtactgt ggacgtggta tcgctgtcag tacaggaata atgggcgccg 3061 gctgtacggc tctactagtg gccgtagttt cccggaaact ggagctgacc cgtgccgaga 3121 agcatgtgca caacttcatg atggacacgc agttgaccaa acggctgaaa aatgctgcgg 3181 cgaatgttct gcgtgaaact tggctcattt acaaacatac aagactagta aaacgggtta 3241 atcccggccg tgtaagaacc caccaaagaa agttccttct agctatatat gcgttgcgaa 3301 aagttaaaat ggatcagcgc aaactaatgg ataatgcaaa cacaataact gacatggcca 3361 agacacaaaa cacggtctac gagataatat cggacatgtc tagccgtcag gatgccatcg 3421 aggagcgcct aaccaacctg gaggacaaaa tgcagagcat acaagagcac atggaaagcc 3481 ttccagacct attgtctcga tgtctgaccc agcaccagga gcggatcgag cagcggcgga 3541 actttttaca tcctgacaca gctgcagtgg cccccattca ggcgccaacg ccccaatcga 3601 tgttcaatgc ggcgcccatg ctgttccccc attctagtta atagctacgc atcttccaac 3661 aaatacggca gctgaatatc agaaagagag cgctccaact ccgtgattaa catcgagatg 3721 ctaacaataa ggccggatcg atgctggcca acatcctcat caacatcaac atcaaacgca 3781 ccccagaaat cagcattacc atcaacatca acatcaatgt ctacgtcaaa ggcaaagtct 3841 aaacccgaat tcgaaatggc cgagacagcg ctcaggcaac gtgtgctatc gccgtcgtta 3901 tcgttattga aatcatcgtc acaagaccgc aatttgcatc aaataagtgg gcggcaaatg 3961 gaaatggaaa tggcaatgga aagagagata gtaccaatat caataccaat accagtgata 4021 cccgaagatg ccgaatcgaa tacgaatagc aacagttcgc ccgatcagca aaatgtgcag 4081 ataagtacag taccgccatc gagttcaacg cctgctttcg gaactagcgg tgcaactagc 4141 gatggcattg tcaaatcgat aacgatgaac gaaccgatga cgacggagag cggcaaaccg 4201 attgcctcga ataagtttac taggaaaaga gaacgtgtat gcaataatag tagttaatag 4261 tgctaggcta tagtgatagt aataatagag gtaatagtaa tattagtaat tctacaagtc 4321 gaatttcgaa ctcggccttt tgtaaataag cctcttcgag atgagaaaaa aagtcaaatg 4381 ttagcatata catataatat acataaaacc acccacacac acacacttcc tatatatctg 4441 tataactgta tggatgtata gcactccccg aaaacggaaa aagaaaaccc cttaaaaata 4501 tcccaaaaca agaaaaccaa aaaacaataa cagaaaacca aacagaatat atgtatacat 4561 atatatacaa ttgtgtaaat ttttttttct aagttttagg ctaattgtat ttgtaatatt 4621 tcaccttggg ccaaggcagc ctgtacttgc atactaaaat tcatatacca taacatagca 4681 tagagtgtgt gtgcatgtgt gaatgcgagt gtacagggcg agaatggaga gtagaaggta 4741 aggtcatagg acatacaaac atatatagat cgtaggacac cagcatgtac gagtagaatc 4801 gaagtatata aacgaattac gctcagcaag gcagaaatag caatagtaaa cctggaaaat 4861 ctggcaccgt cagtatatcc cttgtagaac cgcaatccta actcaaatgg gccaacgaga 4921 tcccctgctg cccgttgcac tttcctttcc gttgcatatc caacaaccaa ccagcaatac 4981 atccacaaac atggcaaatt ctagtgtccg tctgtctcaa atttgtgtgt aaatatatat 5041 gcatatatag cagtatatat atatgtatcc gaaggatgtg tgtctgacct gactgtgtgt 5101 aacccatgcg acccatacaa accaccaccc ccaacaatta tatgaaaaac gaagaagaaa 5161 aaacaaaaac cccaaaccca gaacaatgaa aaactatcta actgtaaaat gtatgttacg 5221 agatttagaa aaaacagcga aaccagaaaa ccaaatacta agagatataa actaaagccg 5281 aataaaagaa aaactgtgga aaaaacgcaa aaaccgagga taaagaaaaa cttacacaca 5341 aaaatgagag ttcttactta acatctacta gctctggctt taactaaact tacgaaacat 5401 gtttaaagga aacaagtttg ttgttgtctt ctttttctac gcatatatta caatatatat 5461 agtatatata catatatatt ttcgttgttg ttgtttttgg cctattcttt tctaccaaga 5521 attatgaact caattaagaa cctgaatagc tttcgaagga aattgaagat gaagacgatg 5581 atgatgatga tgatataatg atatagtagc gtagacaaaa ccaagaaaca aatgatatga 5641 aatcgaaaaa cgaactattt agtatagtct acatactaaa gtgaacaatt ttaattgcaa 5701 ttttgtaaca tattaaaagt aattcgcatt aatttacaaa aactagctgg taaatgtgta 5761 acaacggaac aaactacaag ctccagatgg aaaataatag aaccgaaatg gggagaagcg 5821 aattgaaatt gaattgaaat tgaagtggag gtggaactgg aaatggaaat ggaaatgagt 5881 agagcagatt agtgtagaca taatagcaga agtggccgag ctacgtaaag attttctaaa 5941 gattctaaga ggaacattat atatactata tacttactat aaagtattaa ctgagagcat 6001 cgaagttatt taaaaccaaa tgaaaaacga atgcaaaaag aaaaagcaag caattaggta 6061 atatgcaacc ttctaacgct ttgttaggat cccatcccaa atggaaggca aaagagatat 6121 acaactgaat tccccgaata gtgcccccac ctccccagaa tctcccgttc ccatcacccc 6181 aaccaaaaat cccccaaagt cagcaagaca gactctgcat attattatac agaaccaggg 6241 ccagaaagga tcaaaatatc tgtaaactat agattatata gccgtaggat tcagtccact 6301 taagccaact aataaaagta tagaagtttt gccacactga tttaccacat ctccaaaacc 6361 cctggcttca gtttgtttct atgaaaatta aaaccccaca accataaagt ttcccaattg 6421 tctgatagat cttaacttat atacatacaa tgaaaatccc agaccagcaa aggagtcaaa 6481 ggagaacaaa caacaaacaa gaaacaaaca aaccaactaa atgaaccctt aaacaaatgt 6541 gtgtatacct atttataata ttgaatattt aaattgaaaa gaacgttcaa gactgctgtc 6601 aaaatagctt tatcacaata aataacaaag atctacacaa gacgacacac accaaacaga 6661 acagaacaga acagatcaga acaacaatac taaactgatc gataagtatc gtttatcgaa 6721 tcggaacaga cacctaaaga tacacacaac acacagattc tgatacgaga tatggaatgc 6781 gcccagcttt aacgttatgt attcgtgcat atttgggttt caactctaca acaacttaaa 6841 acgaatacgc aaaagaatac tgaacaaaga tcgatatacg attaacgatt aacaattaac 6901 gatatacgaa tcaaatcaaa tcgaattgaa ttgaataatt ggtacaagat caaattcccg 6961 tttgaactgg tttcctaagc cccacaaaat acctttaaac acgagataaa aaccaaaaac 7021 tttgatatga gggaccgaat ttccaaagac aggtctttat tatacaaaaa accgaacaac 7081 ctaaaaccaa aagcaaaagc aaaccaacta acgaagaatt cctacaaaaa aaaacaaaac 7141 ccataacagt aacaatttat aataccgaag atttttagcc gcttttgagc tggattatga 7201 aaagaaaaag gaatagaaaa aggaaaagag aaaaacacaa ataaggatcg tattgcacaa 7261 tgtccttggt tgacttccgt aacatcatat agacacaggt ccgagtccca cgtccagttt 7321 tagtgtgtat tgtgtatttc cgttcacctt aatcagaatt gaatcgaaaa atatatcaac 7381 tttcttttct tcagcgaatc atagagctca aggggtactt cgagaatcac gcttcaaccg 7441 aaactcttct agccaaacca ggtccaatag aacttacata catatagccc agccaatgcc 7501 aatgctacaa accaaaaaaa aaaatggatt cgagttttcg aaaacgtatc gaaccggatt 7561 atgacgaaaa gggcagccat tttggtgaat ttacacgcta ggaactagaa aagggtcctc 7621 ccaaacacca aatacccccc aaactccata acccctcccc ctcccccacc ccctgtgcgc 7681 ccaactagat cgaggtatgc aaaatatata aggttacata tacaatatct agatatacaa 7741 cacacatata ctcgtatata catgtacaga cggtctatga ggtatatacc aaacccaaga 7801 aagcccaaaa accaaaaacc ccacactaat aagatcatat ttgactttat atgtattata 7861 gtaatgtatt cagtagctaa atcgaaagcc gaagcaaaga ccaatttatt aacaacaaac 7921 taataagata acccccaaaa tggaaaacaa ttattatgtt aaattaaacc attaaaatct 7981 aagagggagg caaaacaatt tttttattga aaaaaaaaaa caagaaaaac aaaacaaaag 8041 aaaacaaagt aaactagaat gcattgcatg aattaaataa agagaaaaaa actaatagaa 8101 acccaaaact taactaacga aggtcaacta aaactaaact taaacttaac ctactctaat 8161 gctaaaattg aagtaaaatt aacttaaaac cactaaaagg aaaaaagatt taatttctaa 8221 aagaaataaa gtaagaaact aaaacaaagt aaacagaaaa aaattcagtg gctaatgaaa 8281 tagtttattt tgaatttact gtattgtata tttaaattta aacaaaaaag ggaaacccca 8341 aacaaaatat attgttatat cttatcgagg aaccgtgttt tgcaaaagct ttaatattta 8401 gggtgcctac atttgctaaa ttagtatttt acgatttaaa acttaaagaa aaaacaaaac 8461 aaatactaaa accaacacct acatacacga aatagtataa agcttgattg aaaaacgaac 8521 ccaaaaagtt aggaacgtga atttccaaaa cgattacact gaacaaaaag aaaaccgaaa 8581 ccaaaacaaa ttaagaacaa ctaacagcta aagcaaatat tgtatttgta tttgagatat 8641 gaattttaag aatgtttatt agacttacgg ttggttattt tgtatacata tatatattat 8701 atgtattatg tatgtagtat aaactgatct gatctgacga cgattgtaat tgtttttttt 8761 tttgctcatt aagcatttac ctcataagaa ttcccactat ttatagcaaa tttaccatat 8821 tacataaaat caattgctgt actgttataa tgtacaaccc caaggaaacg atatgtagga 8881 cgaggaagaa ccataacaag agagagaaat cgataaaagt cgaggggcaa gaggaaaact 8941 cataaaactg taaattatta attaatgaag aaaaaaccaa agagaataat tgaaatttta 9001 acaataataa agggctttgt atgaaagaaa aacaaacaaa aactgaataa aaatgaaata 9061 aaagtaacaa