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LOCUS XM_044394232 9090 bp mRNA linear INV 09-DEC-2024 calcium-activated potassium channel (SK), transcript variant X4, mRNA. ACCESSION XM_044394232 VERSION XM_044394232.2 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_044394232.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..9090 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..9090 /gene="SK" /note="small conductance calcium-activated potassium channel; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108058158" CDS 714..3695 /gene="SK" /codon_start=1 /product="small conductance calcium-activated potassium channel protein isoform X4" /protein_id="XP_044250167.1" /db_xref="GeneID:108058158" /translation="MSIQKLNDTTNSGYVSSEETDSLLVSSSNPSKGGGRTALLRQVK SSSTNGPTTGASTSSSGSVTGSGTGTGSGSGGGSGSVSASGSNSTAGGGTGASKPTLM RQDRTSTYLTSPQQSQHVRMGSEESMRGGGGGGGGGATAHDEDVEQGLQVRSSIVPDI EVHEEDQERGSTTTTTTITTNNQQPTISIMNLSLKPGESHSHSHSSSPGSHPNLGTSS YQNLASSIPPSVPSRCRACRNCSRRASTTPTTLIDRSASRDSVKSAFQQGNLSGSMAI CISNSALPQQQQQQQYHLQQQQHYQLQQQHLQHQQHLQQQQQQQVPPVLITSSPTNGS RIIRQSSQPESSSTAICCGPHSACVGHAHSHSHTVPNVSLKQLRESSGDGIAGIAADS LRINGGMRPFKQLRKPASTLSIPGSMKTPSIANREQISSGCNEEAAEALVGIHSDYPR YEMYMEERALTGGNTSRKPSTNSAKHKPNVGYRLGKRKALFEKRKRISDYALVMGMFG IIVMVIENELSSAGVYTKASFYSTALKTLISVSTVILLGLIVAYHALEVQLFMIDNCA DDWRIAMTWQRISQIGLELFICAIHPIPGEYYFQWTTKLANKNKTIGTEMVPYDVALS LPMFLRLYLICRVMLLHSKLFTDASSRSIGALNRINFNTRFVLKTLMTICPGTVLLVF MVSLWIIASWTLRQCERFHDEEHANLLNAMWLIAITFLSVGFGDIVPNTYCGRGIAVS TGIMGAGCTALLVAVVSRKLELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYK HTRLVKRVNPGRVRTHQRKFLLAIYALRKVKMDQRKLMDNANTITDMAKTQNTVYEII SDMSSRQDAIEERLTNLEDKMQSIQEHMESLPDLLSRCLTQHQERIEQRRNFLHPDTA AVAPIQAPTPQSMFNAAPMLFPHSRSVPSSNNAAATYHWPTSPILPPISSRTPHLVPD THMPSNGSAVNSYASSNKYGS" misc_feature 2163..2495 /gene="SK" /note="Calcium-activated SK potassium channel; Region: SK_channel; pfam03530" /db_xref="CDD:460958" misc_feature 2757..2996 /gene="SK" /note="Ion channel; Region: Ion_trans_2; pfam07885" /db_xref="CDD:462301" misc_feature 3036..3260 /gene="SK" /note="Calmodulin binding domain; Region: CaMBD; pfam02888" /db_xref="CDD:460739" polyA_site 9090 /gene="SK" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 caaacaacac taacggaaac atcaacgtga aagcgagacg gacgccctcc gtcccgttat 61 atgctgtgtc tgtctgtctg tctgtgtgtt gagagttcta cgtcgcgcac tccaaaaaaa 121 aaaaaaacca aaaaaaaaaa tcaaaaactt taacactcgc atacacactg gcacacacaa 181 acatacacac acatacatta atatatatag ttaaaaaaaa attatataca aaaagaaaag 241 aagtgcaaga aaaataagcg cccactgcgg ccaatggaaa tgccaaagaa aatgcagcag 301 caacaaattc gacaacaaac gcaaattcta cagcaacaac aacaacaaca agcacagcca 361 cagcagcaac aactgcagtt ccccaataca taggtccacc gattttccgt ctttgtcgcg 421 cgcgttcaca cacacaaaca cagtcacaca ctgggacaca tgcatgtgca taaatggcaa 481 tatggacgaa gagcagcagc agcatttgcc ttgtattggt ataccagcac agtgacacgc 541 gcgtgccaaa tattgccgat tttatcacac gaacaacaac aacaacaaca actgcaacaa 601 cagcaacacc agcgggacca gctattaact aaaggagcca ttacaacaac aaagaccata 661 gcaacaacaa caagaacaac gaacattgct ggaaggcgtc gcaaaatatc aaaatgtcaa 721 ttcagaagct aaacgacacc accaactcgg gctacgtgag ttccgaggag acggactcgc 781 tgctggtgag cagctcgaat ccctccaagg ggggcggccg gacggctctg ctgcgccagg 841 tgaagagtag ctccacgaat ggcccgacga cgggggcatc cacctcgtcg tcgggctcgg 901 tgacgggatc gggaacagga actggttctg gttccggtgg aggatcagga tctgtatcgg 961 catcgggctc gaattcgaca gccggcggag gaactggggc ttccaagcca acattaatgc 1021 gccaggatcg cacttccaca tacctaacga gtccccagca atcgcagcat gtgcgaatgg 1081 gctccgagga gagtatgaga ggtggaggag gaggaggcgg aggaggagcc accgcccacg 1141 acgaggatgt ggagcaggga ctgcaggtcc gcagcagcat agtgcctgac attgaagtac 1201 acgaagagga ccaagaaagg ggatcgacaa cgaccacgac cacgatcacg accaataacc 1261 aacaaccgac catatcaatt atgaatttaa gcctgaagcc cggcgagagc catagccata 1321 gccacagctc cagcccgggc agtcatccca acttgggcac ctcatcatat cagaacctgg 1381 cctcgagcat accgcccagt gtgcccagtc gctgccgggc ctgtcgcaat tgcagccgac 1441 gtgcttccac cacgcccacc accctcatcg atcgctccgc ctcccgcgat agtgtgaaaa 1501 gtgccttcca gcagggcaat ctcagtggct cgatggccat ttgtatatcg aactccgcgc 1561 tgccgcaaca gcagcagcag cagcaatatc acctgcaaca gcagcaacac tatcaattgc 1621 agcagcaaca cctgcagcat cagcaacatc tgcagcagca gcagcagcaa caggtgccgc 1681 ccgttttgat cacctcatcg ccaacgaacg gatcccggat tatacggcag agctcacagc 1741 cggaatcgag cagcacggcg atctgctgcg gaccccattc cgcctgcgtc ggccacgccc 1801 actcgcactc gcacacggtg cccaatgtct cgctgaagca actgcgcgaa agttccggcg 1861 atggaatcgc gggcattgca gccgactccc tgcggatcaa tgggggcatg cggcccttca 1921 agcagctccg caaaccggcg tcgacactct caattcctgg ctcgatgaaa acaccttcca 1981 ttgcgaaccg ggaacagatc tcatctggat gcaacgaaga agcggccgag gcactagtgg 2041 gtatccactc agactaccct aggtatgaaa tgtatatgga agaacgtgct cttactggcg 2101 gcaatacgtc caggaagcca tcaacaaact cggccaaaca caaacccaat gtgggctatc 2161 gcctgggcaa gaggaaagcc ctcttcgaga agcgcaaacg gatcagcgat tacgccctgg 2221 tcatgggcat gttcgggatc atcgtgatgg taatcgaaaa cgagctgagc agtgccggtg 2281 tctacacaaa ggcatcgttc tactcgacag cgttaaaaac cttaatatct gtttcgactg 2341 tgattctttt aggacttata gtagcttacc atgctttgga agtgcagtta ttcatgatag 2401 ataactgcgc cgacgattgg aggatcgcaa tgacatggca acgaattagt caaatagggt 2461 tagaactttt tatatgcgct atacatccaa ttcctggcga atactatttc cagtggacga 2521 cgaaattggc caataagaat aaaacaattg gcaccgaaat ggtgccatat gacgtagctt 2581 tatcattacc tatgttcctt cgattatatt taatctgccg cgtaatgctg ctgcattcaa 2641 agctattcac agacgcatca tcacggagca ttggcgctct caataggatt aattttaaca 2701 caagattcgt tttaaaaact ctaatgacaa tatgcccggg aacggttcta ttggtcttca 2761 tggtctcgct gtggatcatc gcatcctgga cgctgcgtca gtgcgaaaga tttcatgatg 2821 aagaacatgc gaatcttttg aatgcaatgt ggctgatagc gataacattt ttgagtgttg 2881 gtttcggtga tattgttccg aatacgtact gtggacgtgg tatcgctgtc agtacaggaa 2941 taatgggcgc cggctgtacg gctctactag tggccgtagt ttcccggaaa ctggagctga 3001 cccgtgccga gaagcatgtg cacaacttca tgatggacac gcagttgacc aaacggctga 3061 aaaatgctgc ggcgaatgtt ctgcgtgaaa cttggctcat ttacaaacat acaagactag 3121 taaaacgggt taatcccggc cgtgtaagaa cccaccaaag aaagttcctt ctagctatat 3181 atgcgttgcg aaaagttaaa atggatcagc gcaaactaat ggataatgca aacacaataa 3241 ctgacatggc caagacacaa aacacggtct acgagataat atcggacatg tctagccgtc 3301 aggatgccat cgaggagcgc ctaaccaacc tggaggacaa aatgcagagc atacaagagc 3361 acatggaaag ccttccagac ctattgtctc gatgtctgac ccagcaccag gagcggatcg 3421 agcagcggcg gaacttttta catcctgaca cagctgcagt ggcccccatt caggcgccaa 3481 cgccccaatc gatgttcaat gcggcgccca tgctgttccc ccattctaga agtgttccct 3541 catccaataa cgccgctgct acttaccatt ggccaacaag ccctattttg ccacctatat 3601 ctagtagaac accacattta gtgcctgata ctcacatgcc atcaaatgga tctgcagtta 3661 atagctacgc atcttccaac aaatacggca gctgaatatc agaaagagag cgctccaact 3721 ccgtgattaa catcgagatg ctaacaataa ggccggatcg atgctggcca acatcctcat 3781 caacatcaac atcaaacgca ccccagaaat cagcattacc atcaacatca acatcaatgt 3841 ctacgtcaaa ggcaaagtct aaacccgaat tcgaaatggc cgagacagcg ctcaggcaac 3901 gtgtgctatc gccgtcgtta tcgttattga aatcatcgtc acaagaccgc aatttgcatc 3961 aaataagtgg gcggcaaatg gaaatggaaa tggcaatgga aagagagata gtaccaatat 4021 caataccaat accagtgata cccgaagatg ccgaatcgaa tacgaatagc aacagttcgc 4081 ccgatcagca aaatgtgcag ataagtacag taccgccatc gagttcaacg cctgctttcg 4141 gaactagcgg tgcaactagc gatggcattg tcaaatcgat aacgatgaac gaaccgatga 4201 cgacggagag cggcaaaccg attgcctcga ataagtttac taggaaaaga gaacgtgtat 4261 gcaataatag tagttaatag tgctaggcta tagtgatagt aataatagag gtaatagtaa 4321 tattagtaat tctacaagtc gaatttcgaa ctcggccttt tgtaaataag cctcttcgag 4381 atgagaaaaa aagtcaaatg ttagcatata catataatat acataaaacc acccacacac 4441 acacacttcc tatatatctg tataactgta tggatgtata gcactccccg aaaacggaaa 4501 aagaaaaccc cttaaaaata tcccaaaaca agaaaaccaa aaaacaataa cagaaaacca 4561 aacagaatat atgtatacat atatatacaa ttgtgtaaat ttttttttct aagttttagg 4621 ctaattgtat ttgtaatatt tcaccttggg ccaaggcagc ctgtacttgc atactaaaat 4681 tcatatacca taacatagca tagagtgtgt gtgcatgtgt gaatgcgagt gtacagggcg 4741 agaatggaga gtagaaggta aggtcatagg acatacaaac atatatagat cgtaggacac 4801 cagcatgtac gagtagaatc gaagtatata aacgaattac gctcagcaag gcagaaatag 4861 caatagtaaa cctggaaaat ctggcaccgt cagtatatcc cttgtagaac cgcaatccta 4921 actcaaatgg gccaacgaga tcccctgctg cccgttgcac tttcctttcc gttgcatatc 4981 caacaaccaa ccagcaatac atccacaaac atggcaaatt ctagtgtccg tctgtctcaa 5041 atttgtgtgt aaatatatat gcatatatag cagtatatat atatgtatcc gaaggatgtg 5101 tgtctgacct gactgtgtgt aacccatgcg acccatacaa accaccaccc ccaacaatta 5161 tatgaaaaac gaagaagaaa aaacaaaaac cccaaaccca gaacaatgaa aaactatcta 5221 actgtaaaat gtatgttacg agatttagaa aaaacagcga aaccagaaaa ccaaatacta 5281 agagatataa actaaagccg aataaaagaa aaactgtgga aaaaacgcaa aaaccgagga 5341 taaagaaaaa cttacacaca aaaatgagag ttcttactta acatctacta gctctggctt 5401 taactaaact tacgaaacat gtttaaagga aacaagtttg ttgttgtctt ctttttctac 5461 gcatatatta caatatatat agtatatata catatatatt ttcgttgttg ttgtttttgg 5521 cctattcttt tctaccaaga attatgaact caattaagaa cctgaatagc tttcgaagga 5581 aattgaagat gaagacgatg atgatgatga tgatataatg atatagtagc gtagacaaaa 5641 ccaagaaaca aatgatatga aatcgaaaaa cgaactattt agtatagtct acatactaaa 5701 gtgaacaatt ttaattgcaa ttttgtaaca tattaaaagt aattcgcatt aatttacaaa 5761 aactagctgg taaatgtgta acaacggaac aaactacaag ctccagatgg aaaataatag 5821 aaccgaaatg gggagaagcg aattgaaatt gaattgaaat tgaagtggag gtggaactgg 5881 aaatggaaat ggaaatgagt agagcagatt agtgtagaca taatagcaga agtggccgag 5941 ctacgtaaag attttctaaa gattctaaga ggaacattat atatactata tacttactat 6001 aaagtattaa ctgagagcat cgaagttatt taaaaccaaa tgaaaaacga atgcaaaaag 6061 aaaaagcaag caattaggta atatgcaacc ttctaacgct ttgttaggat cccatcccaa 6121 atggaaggca aaagagatat acaactgaat tccccgaata gtgcccccac ctccccagaa 6181 tctcccgttc ccatcacccc aaccaaaaat cccccaaagt cagcaagaca gactctgcat 6241 attattatac agaaccaggg ccagaaagga tcaaaatatc tgtaaactat agattatata 6301 gccgtaggat tcagtccact taagccaact aataaaagta tagaagtttt gccacactga 6361 tttaccacat ctccaaaacc cctggcttca gtttgtttct atgaaaatta aaaccccaca 6421 accataaagt ttcccaattg tctgatagat cttaacttat atacatacaa tgaaaatccc 6481 agaccagcaa aggagtcaaa ggagaacaaa caacaaacaa gaaacaaaca aaccaactaa 6541 atgaaccctt aaacaaatgt gtgtatacct atttataata ttgaatattt aaattgaaaa 6601 gaacgttcaa gactgctgtc aaaatagctt tatcacaata aataacaaag atctacacaa 6661 gacgacacac accaaacaga acagaacaga acagatcaga acaacaatac taaactgatc 6721 gataagtatc gtttatcgaa tcggaacaga cacctaaaga tacacacaac acacagattc 6781 tgatacgaga tatggaatgc gcccagcttt aacgttatgt attcgtgcat atttgggttt 6841 caactctaca acaacttaaa acgaatacgc aaaagaatac tgaacaaaga tcgatatacg 6901 attaacgatt aacaattaac gatatacgaa tcaaatcaaa tcgaattgaa ttgaataatt 6961 ggtacaagat caaattcccg tttgaactgg tttcctaagc cccacaaaat acctttaaac 7021 acgagataaa aaccaaaaac tttgatatga gggaccgaat ttccaaagac aggtctttat 7081 tatacaaaaa accgaacaac ctaaaaccaa aagcaaaagc aaaccaacta acgaagaatt 7141 cctacaaaaa aaaacaaaac ccataacagt aacaatttat aataccgaag atttttagcc 7201 gcttttgagc tggattatga aaagaaaaag gaatagaaaa aggaaaagag aaaaacacaa 7261 ataaggatcg tattgcacaa tgtccttggt tgacttccgt aacatcatat agacacaggt 7321 ccgagtccca cgtccagttt tagtgtgtat tgtgtatttc cgttcacctt aatcagaatt 7381 gaatcgaaaa atatatcaac tttcttttct tcagcgaatc atagagctca aggggtactt 7441 cgagaatcac gcttcaaccg aaactcttct agccaaacca ggtccaatag aacttacata 7501 catatagccc agccaatgcc aatgctacaa accaaaaaaa aaaatggatt cgagttttcg 7561 aaaacgtatc gaaccggatt atgacgaaaa gggcagccat tttggtgaat ttacacgcta 7621 ggaactagaa aagggtcctc ccaaacacca aatacccccc aaactccata acccctcccc 7681 ctcccccacc ccctgtgcgc ccaactagat cgaggtatgc aaaatatata aggttacata 7741 tacaatatct agatatacaa cacacatata ctcgtatata catgtacaga cggtctatga 7801 ggtatatacc aaacccaaga aagcccaaaa accaaaaacc ccacactaat aagatcatat 7861 ttgactttat atgtattata gtaatgtatt cagtagctaa atcgaaagcc gaagcaaaga 7921 ccaatttatt aacaacaaac taataagata acccccaaaa tggaaaacaa ttattatgtt 7981 aaattaaacc attaaaatct aagagggagg caaaacaatt tttttattga aaaaaaaaaa 8041 caagaaaaac aaaacaaaag aaaacaaagt aaactagaat gcattgcatg aattaaataa 8101 agagaaaaaa actaatagaa acccaaaact taactaacga aggtcaacta aaactaaact 8161 taaacttaac ctactctaat gctaaaattg aagtaaaatt aacttaaaac cactaaaagg 8221 aaaaaagatt taatttctaa aagaaataaa gtaagaaact aaaacaaagt aaacagaaaa 8281 aaattcagtg gctaatgaaa tagtttattt tgaatttact gtattgtata tttaaattta 8341 aacaaaaaag ggaaacccca aacaaaatat attgttatat cttatcgagg aaccgtgttt 8401 tgcaaaagct ttaatattta gggtgcctac atttgctaaa ttagtatttt acgatttaaa 8461 acttaaagaa aaaacaaaac aaatactaaa accaacacct acatacacga aatagtataa 8521 agcttgattg aaaaacgaac ccaaaaagtt aggaacgtga atttccaaaa cgattacact 8581 gaacaaaaag aaaaccgaaa ccaaaacaaa ttaagaacaa ctaacagcta aagcaaatat 8641 tgtatttgta tttgagatat gaattttaag aatgtttatt agacttacgg ttggttattt 8701 tgtatacata tatatattat atgtattatg tatgtagtat aaactgatct gatctgacga 8761 cgattgtaat tgtttttttt tttgctcatt aagcatttac ctcataagaa ttcccactat 8821 ttatagcaaa tttaccatat tacataaaat caattgctgt actgttataa tgtacaaccc 8881 caaggaaacg atatgtagga cgaggaagaa ccataacaag agagagaaat cgataaaagt 8941 cgaggggcaa gaggaaaact cataaaactg taaattatta attaatgaag aaaaaaccaa 9001 agagaataat tgaaatttta acaataataa agggctttgt atgaaagaaa aacaaacaaa 9061 aactgaataa aaatgaaata aaagtaacaa