Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_044394224 9195 bp mRNA linear INV 09-DEC-2024 calcium-activated potassium channel (SK), transcript variant X2, mRNA. ACCESSION XM_044394224 VERSION XM_044394224.2 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_044394224.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..9195 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..9195 /gene="SK" /note="small conductance calcium-activated potassium channel; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108058158" CDS 714..3800 /gene="SK" /codon_start=1 /product="small conductance calcium-activated potassium channel protein isoform X2" /protein_id="XP_044250159.1" /db_xref="GeneID:108058158" /translation="MSIQKLNDTTNSGYVSSEETDSLLVSSSNPSKGGGRTALLRQVK SSSTNGPTTGASTSSSGSVTGSGTGTGSGSGGGSGSVSASGSNSTAGGGTGASKPTLM RQDRTSTYLTSPQQSQHVRMGSEESMRGGGGGGGGGATAHDEDVEQGLQVRSSIVPDI EVHEEDQERGSTTTTTTITTNNQQPTISIMNLSLKPGESHSHSHSSSPGSHPNLGTSS YQNLASSIPPSVPSRCRACRNCSRRASTTPTTLIDRSASRDSVKSAFQQGNLSGSMAI CISNSALPQQQQQQQYHLQQQQHYQLQQQHLQHQQHLQQQQQQQVPPVLITSSPTNGS RIIRQSSQPESSSTAICCGPHSACVGHAHSHSHTVPNVSLKQLRESSGDGIAGIAADS LRINGGMRPFKQGVLLMPRTLSDSRKLRLRRAFTEATNETLQCSKMLRKPASTLSIPG SMKTPSIANREQISSGCNEEAAEALVGIHSDYPRYEMYMEERALTGGNTSRKPSTNSA KHKPNVGYRLGKRKALFEKRKRISDYALVMGMFGIIVMVIENELSSAGVYTKASFYST ALKTLISVSTVILLGLIVAYHALEVQVRLFMIDNCADDWRIAMTWQRISQIGLELFIC AIHPIPGEYYFQWTTKLANKNKTIGTEMVPYDVALSLPMFLRLYLICRVMLLHSKLFT DASSRSIGALNRINFNTRFVLKTLMTICPGTVLLVFMVSLWIIASWTLRQCERFHDEE HANLLNAMWLIAITFLSVGFGDIVPNTYCGRGIAVSTGIMGAGCTALLVAVVSRKLEL TRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRVNPGRVRTHQRKFLL AIYALRKVKMDQRKLMDNANTITDMAKTQNTVYEIISDMSSRQDAIEERLTNLEDKMQ SIQEHMESLPDLLSRCLTQHQERIEQRRNFLHPDTAAVAPIQAPTPQSMFNAAPMLFP HSSVPSSNNAAATYHWPTSPILPPISSRTPHLVPDTHMPSNGSAVNSYASSNKYGS" misc_feature 2265..2603 /gene="SK" /note="Calcium-activated SK potassium channel; Region: SK_channel; pfam03530" /db_xref="CDD:460958" misc_feature 2865..3104 /gene="SK" /note="Ion channel; Region: Ion_trans_2; pfam07885" /db_xref="CDD:462301" misc_feature 3144..3368 /gene="SK" /note="Calmodulin binding domain; Region: CaMBD; pfam02888" /db_xref="CDD:460739" polyA_site 9195 /gene="SK" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 caaacaacac taacggaaac atcaacgtga aagcgagacg gacgccctcc gtcccgttat 61 atgctgtgtc tgtctgtctg tctgtgtgtt gagagttcta cgtcgcgcac tccaaaaaaa 121 aaaaaaacca aaaaaaaaaa tcaaaaactt taacactcgc atacacactg gcacacacaa 181 acatacacac acatacatta atatatatag ttaaaaaaaa attatataca aaaagaaaag 241 aagtgcaaga aaaataagcg cccactgcgg ccaatggaaa tgccaaagaa aatgcagcag 301 caacaaattc gacaacaaac gcaaattcta cagcaacaac aacaacaaca agcacagcca 361 cagcagcaac aactgcagtt ccccaataca taggtccacc gattttccgt ctttgtcgcg 421 cgcgttcaca cacacaaaca cagtcacaca ctgggacaca tgcatgtgca taaatggcaa 481 tatggacgaa gagcagcagc agcatttgcc ttgtattggt ataccagcac agtgacacgc 541 gcgtgccaaa tattgccgat tttatcacac gaacaacaac aacaacaaca actgcaacaa 601 cagcaacacc agcgggacca gctattaact aaaggagcca ttacaacaac aaagaccata 661 gcaacaacaa caagaacaac gaacattgct ggaaggcgtc gcaaaatatc aaaatgtcaa 721 ttcagaagct aaacgacacc accaactcgg gctacgtgag ttccgaggag acggactcgc 781 tgctggtgag cagctcgaat ccctccaagg ggggcggccg gacggctctg ctgcgccagg 841 tgaagagtag ctccacgaat ggcccgacga cgggggcatc cacctcgtcg tcgggctcgg 901 tgacgggatc gggaacagga actggttctg gttccggtgg aggatcagga tctgtatcgg 961 catcgggctc gaattcgaca gccggcggag gaactggggc ttccaagcca acattaatgc 1021 gccaggatcg cacttccaca tacctaacga gtccccagca atcgcagcat gtgcgaatgg 1081 gctccgagga gagtatgaga ggtggaggag gaggaggcgg aggaggagcc accgcccacg 1141 acgaggatgt ggagcaggga ctgcaggtcc gcagcagcat agtgcctgac attgaagtac 1201 acgaagagga ccaagaaagg ggatcgacaa cgaccacgac cacgatcacg accaataacc 1261 aacaaccgac catatcaatt atgaatttaa gcctgaagcc cggcgagagc catagccata 1321 gccacagctc cagcccgggc agtcatccca acttgggcac ctcatcatat cagaacctgg 1381 cctcgagcat accgcccagt gtgcccagtc gctgccgggc ctgtcgcaat tgcagccgac 1441 gtgcttccac cacgcccacc accctcatcg atcgctccgc ctcccgcgat agtgtgaaaa 1501 gtgccttcca gcagggcaat ctcagtggct cgatggccat ttgtatatcg aactccgcgc 1561 tgccgcaaca gcagcagcag cagcaatatc acctgcaaca gcagcaacac tatcaattgc 1621 agcagcaaca cctgcagcat cagcaacatc tgcagcagca gcagcagcaa caggtgccgc 1681 ccgttttgat cacctcatcg ccaacgaacg gatcccggat tatacggcag agctcacagc 1741 cggaatcgag cagcacggcg atctgctgcg gaccccattc cgcctgcgtc ggccacgccc 1801 actcgcactc gcacacggtg cccaatgtct cgctgaagca actgcgcgaa agttccggcg 1861 atggaatcgc gggcattgca gccgactccc tgcggatcaa tgggggcatg cggcccttca 1921 agcagggcgt tcttctaatg cctcgcacat tgtctgatag ccgaaagttg cgccttcgca 1981 gagccttcac cgaggccact aacgaaacgc tccaatgctc caaaatgctc cgcaaaccgg 2041 cgtcgacact ctcaattcct ggctcgatga aaacaccttc cattgcgaac cgggaacaga 2101 tctcatctgg atgcaacgaa gaagcggccg aggcactagt gggtatccac tcagactacc 2161 ctaggtatga aatgtatatg gaagaacgtg ctcttactgg cggcaatacg tccaggaagc 2221 catcaacaaa ctcggccaaa cacaaaccca atgtgggcta tcgcctgggc aagaggaaag 2281 ccctcttcga gaagcgcaaa cggatcagcg attacgccct ggtcatgggc atgttcggga 2341 tcatcgtgat ggtaatcgaa aacgagctga gcagtgccgg tgtctacaca aaggcatcgt 2401 tctactcgac agcgttaaaa accttaatat ctgtttcgac tgtgattctt ttaggactta 2461 tagtagctta ccatgctttg gaagtgcagg tgagattatt catgatagat aactgcgccg 2521 acgattggag gatcgcaatg acatggcaac gaattagtca aatagggtta gaacttttta 2581 tatgcgctat acatccaatt cctggcgaat actatttcca gtggacgacg aaattggcca 2641 ataagaataa aacaattggc accgaaatgg tgccatatga cgtagcttta tcattaccta 2701 tgttccttcg attatattta atctgccgcg taatgctgct gcattcaaag ctattcacag 2761 acgcatcatc acggagcatt ggcgctctca ataggattaa ttttaacaca agattcgttt 2821 taaaaactct aatgacaata tgcccgggaa cggttctatt ggtcttcatg gtctcgctgt 2881 ggatcatcgc atcctggacg ctgcgtcagt gcgaaagatt tcatgatgaa gaacatgcga 2941 atcttttgaa tgcaatgtgg ctgatagcga taacattttt gagtgttggt ttcggtgata 3001 ttgttccgaa tacgtactgt ggacgtggta tcgctgtcag tacaggaata atgggcgccg 3061 gctgtacggc tctactagtg gccgtagttt cccggaaact ggagctgacc cgtgccgaga 3121 agcatgtgca caacttcatg atggacacgc agttgaccaa acggctgaaa aatgctgcgg 3181 cgaatgttct gcgtgaaact tggctcattt acaaacatac aagactagta aaacgggtta 3241 atcccggccg tgtaagaacc caccaaagaa agttccttct agctatatat gcgttgcgaa 3301 aagttaaaat ggatcagcgc aaactaatgg ataatgcaaa cacaataact gacatggcca 3361 agacacaaaa cacggtctac gagataatat cggacatgtc tagccgtcag gatgccatcg 3421 aggagcgcct aaccaacctg gaggacaaaa tgcagagcat acaagagcac atggaaagcc 3481 ttccagacct attgtctcga tgtctgaccc agcaccagga gcggatcgag cagcggcgga 3541 actttttaca tcctgacaca gctgcagtgg cccccattca ggcgccaacg ccccaatcga 3601 tgttcaatgc ggcgcccatg ctgttccccc attctagtgt tccctcatcc aataacgccg 3661 ctgctactta ccattggcca acaagcccta ttttgccacc tatatctagt agaacaccac 3721 atttagtgcc tgatactcac atgccatcaa atggatctgc agttaatagc tacgcatctt 3781 ccaacaaata cggcagctga atatcagaaa gagagcgctc caactccgtg attaacatcg 3841 agatgctaac aataaggccg gatcgatgct ggccaacatc ctcatcaaca tcaacatcaa 3901 acgcacccca gaaatcagca ttaccatcaa catcaacatc aatgtctacg tcaaaggcaa 3961 agtctaaacc cgaattcgaa atggccgaga cagcgctcag gcaacgtgtg ctatcgccgt 4021 cgttatcgtt attgaaatca tcgtcacaag accgcaattt gcatcaaata agtgggcggc 4081 aaatggaaat ggaaatggca atggaaagag agatagtacc aatatcaata ccaataccag 4141 tgatacccga agatgccgaa tcgaatacga atagcaacag ttcgcccgat cagcaaaatg 4201 tgcagataag tacagtaccg ccatcgagtt caacgcctgc tttcggaact agcggtgcaa 4261 ctagcgatgg cattgtcaaa tcgataacga tgaacgaacc gatgacgacg gagagcggca 4321 aaccgattgc ctcgaataag tttactagga aaagagaacg tgtatgcaat aatagtagtt 4381 aatagtgcta ggctatagtg atagtaataa tagaggtaat agtaatatta gtaattctac 4441 aagtcgaatt tcgaactcgg ccttttgtaa ataagcctct tcgagatgag aaaaaaagtc 4501 aaatgttagc atatacatat aatatacata aaaccaccca cacacacaca cttcctatat 4561 atctgtataa ctgtatggat gtatagcact ccccgaaaac ggaaaaagaa aaccccttaa 4621 aaatatccca aaacaagaaa accaaaaaac aataacagaa aaccaaacag aatatatgta 4681 tacatatata tacaattgtg taaatttttt tttctaagtt ttaggctaat tgtatttgta 4741 atatttcacc ttgggccaag gcagcctgta cttgcatact aaaattcata taccataaca 4801 tagcatagag tgtgtgtgca tgtgtgaatg cgagtgtaca gggcgagaat ggagagtaga 4861 aggtaaggtc ataggacata caaacatata tagatcgtag gacaccagca tgtacgagta 4921 gaatcgaagt atataaacga attacgctca gcaaggcaga aatagcaata gtaaacctgg 4981 aaaatctggc accgtcagta tatcccttgt agaaccgcaa tcctaactca aatgggccaa 5041 cgagatcccc tgctgcccgt tgcactttcc tttccgttgc atatccaaca accaaccagc 5101 aatacatcca caaacatggc aaattctagt gtccgtctgt ctcaaatttg tgtgtaaata 5161 tatatgcata tatagcagta tatatatatg tatccgaagg atgtgtgtct gacctgactg 5221 tgtgtaaccc atgcgaccca tacaaaccac cacccccaac aattatatga aaaacgaaga 5281 agaaaaaaca aaaaccccaa acccagaaca atgaaaaact atctaactgt aaaatgtatg 5341 ttacgagatt tagaaaaaac agcgaaacca gaaaaccaaa tactaagaga tataaactaa 5401 agccgaataa aagaaaaact gtggaaaaaa cgcaaaaacc gaggataaag aaaaacttac 5461 acacaaaaat gagagttctt acttaacatc tactagctct ggctttaact aaacttacga 5521 aacatgttta aaggaaacaa gtttgttgtt gtcttctttt tctacgcata tattacaata 5581 tatatagtat atatacatat atattttcgt tgttgttgtt tttggcctat tcttttctac 5641 caagaattat gaactcaatt aagaacctga atagctttcg aaggaaattg aagatgaaga 5701 cgatgatgat gatgatgata taatgatata gtagcgtaga caaaaccaag aaacaaatga 5761 tatgaaatcg aaaaacgaac tatttagtat agtctacata ctaaagtgaa caattttaat 5821 tgcaattttg taacatatta aaagtaattc gcattaattt acaaaaacta gctggtaaat 5881 gtgtaacaac ggaacaaact acaagctcca gatggaaaat aatagaaccg aaatggggag 5941 aagcgaattg aaattgaatt gaaattgaag tggaggtgga actggaaatg gaaatggaaa 6001 tgagtagagc agattagtgt agacataata gcagaagtgg ccgagctacg taaagatttt 6061 ctaaagattc taagaggaac attatatata ctatatactt actataaagt attaactgag 6121 agcatcgaag ttatttaaaa ccaaatgaaa aacgaatgca aaaagaaaaa gcaagcaatt 6181 aggtaatatg caaccttcta acgctttgtt aggatcccat cccaaatgga aggcaaaaga 6241 gatatacaac tgaattcccc gaatagtgcc cccacctccc cagaatctcc cgttcccatc 6301 accccaacca aaaatccccc aaagtcagca agacagactc tgcatattat tatacagaac 6361 cagggccaga aaggatcaaa atatctgtaa actatagatt atatagccgt aggattcagt 6421 ccacttaagc caactaataa aagtatagaa gttttgccac actgatttac cacatctcca 6481 aaacccctgg cttcagtttg tttctatgaa aattaaaacc ccacaaccat aaagtttccc 6541 aattgtctga tagatcttaa cttatataca tacaatgaaa atcccagacc agcaaaggag 6601 tcaaaggaga acaaacaaca aacaagaaac aaacaaacca actaaatgaa cccttaaaca 6661 aatgtgtgta tacctattta taatattgaa tatttaaatt gaaaagaacg ttcaagactg 6721 ctgtcaaaat agctttatca caataaataa caaagatcta cacaagacga cacacaccaa 6781 acagaacaga acagaacaga tcagaacaac aatactaaac tgatcgataa gtatcgttta 6841 tcgaatcgga acagacacct aaagatacac acaacacaca gattctgata cgagatatgg 6901 aatgcgccca gctttaacgt tatgtattcg tgcatatttg ggtttcaact ctacaacaac 6961 ttaaaacgaa tacgcaaaag aatactgaac aaagatcgat atacgattaa cgattaacaa 7021 ttaacgatat acgaatcaaa tcaaatcgaa ttgaattgaa taattggtac aagatcaaat 7081 tcccgtttga actggtttcc taagccccac aaaatacctt taaacacgag ataaaaacca 7141 aaaactttga tatgagggac cgaatttcca aagacaggtc tttattatac aaaaaaccga 7201 acaacctaaa accaaaagca aaagcaaacc aactaacgaa gaattcctac aaaaaaaaac 7261 aaaacccata acagtaacaa tttataatac cgaagatttt tagccgcttt tgagctggat 7321 tatgaaaaga aaaaggaata gaaaaaggaa aagagaaaaa cacaaataag gatcgtattg 7381 cacaatgtcc ttggttgact tccgtaacat catatagaca caggtccgag tcccacgtcc 7441 agttttagtg tgtattgtgt atttccgttc accttaatca gaattgaatc gaaaaatata 7501 tcaactttct tttcttcagc gaatcataga gctcaagggg tacttcgaga atcacgcttc 7561 aaccgaaact cttctagcca aaccaggtcc aatagaactt acatacatat agcccagcca 7621 atgccaatgc tacaaaccaa aaaaaaaaat ggattcgagt tttcgaaaac gtatcgaacc 7681 ggattatgac gaaaagggca gccattttgg tgaatttaca cgctaggaac tagaaaaggg 7741 tcctcccaaa caccaaatac cccccaaact ccataacccc tccccctccc ccaccccctg 7801 tgcgcccaac tagatcgagg tatgcaaaat atataaggtt acatatacaa tatctagata 7861 tacaacacac atatactcgt atatacatgt acagacggtc tatgaggtat ataccaaacc 7921 caagaaagcc caaaaaccaa aaaccccaca ctaataagat catatttgac tttatatgta 7981 ttatagtaat gtattcagta gctaaatcga aagccgaagc aaagaccaat ttattaacaa 8041 caaactaata agataacccc caaaatggaa aacaattatt atgttaaatt aaaccattaa 8101 aatctaagag ggaggcaaaa caattttttt attgaaaaaa aaaaacaaga aaaacaaaac 8161 aaaagaaaac aaagtaaact agaatgcatt gcatgaatta aataaagaga aaaaaactaa 8221 tagaaaccca aaacttaact aacgaaggtc aactaaaact aaacttaaac ttaacctact 8281 ctaatgctaa aattgaagta aaattaactt aaaaccacta aaaggaaaaa agatttaatt 8341 tctaaaagaa ataaagtaag aaactaaaac aaagtaaaca gaaaaaaatt cagtggctaa 8401 tgaaatagtt tattttgaat ttactgtatt gtatatttaa atttaaacaa aaaagggaaa 8461 ccccaaacaa aatatattgt tatatcttat cgaggaaccg tgttttgcaa aagctttaat 8521 atttagggtg cctacatttg ctaaattagt attttacgat ttaaaactta aagaaaaaac 8581 aaaacaaata ctaaaaccaa cacctacata cacgaaatag tataaagctt gattgaaaaa 8641 cgaacccaaa aagttaggaa cgtgaatttc caaaacgatt acactgaaca aaaagaaaac 8701 cgaaaccaaa acaaattaag aacaactaac agctaaagca aatattgtat ttgtatttga 8761 gatatgaatt ttaagaatgt ttattagact tacggttggt tattttgtat acatatatat 8821 attatatgta ttatgtatgt agtataaact gatctgatct gacgacgatt gtaattgttt 8881 ttttttttgc tcattaagca tttacctcat aagaattccc actatttata gcaaatttac 8941 catattacat aaaatcaatt gctgtactgt tataatgtac aaccccaagg aaacgatatg 9001 taggacgagg aagaaccata acaagagaga gaaatcgata aaagtcgagg ggcaagagga 9061 aaactcataa aactgtaaat tattaattaa tgaagaaaaa accaaagaga ataattgaaa 9121 ttttaacaat aataaagggc tttgtatgaa agaaaaacaa acaaaaactg aataaaaatg 9181 aaataaaagt aacaa