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LOCUS XM_044394217 4002 bp mRNA linear INV 09-DEC-2024 mRNA. ACCESSION XM_044394217 VERSION XM_044394217.2 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_044394217.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4002 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4002 /gene="LOC108057298" /note="chondroadherin; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:108057298" CDS 480..1757 /gene="LOC108057298" /codon_start=1 /product="chondroadherin" /protein_id="XP_044250152.1" /db_xref="GeneID:108057298" /translation="MCNSWLVLIIALSVVVCLWNSQQTETSKSCPAECICLSQTQVLC NTGGLEQIPLRQLPATVENLALTKNNFPIIKPDSFAGLRALKKLSLDGNNITRIKQFA FRGLPRLKELSIQYTPLQMVAQFAFAGLQNLSTILLSHNQIQRIEGNAFAGTSNIKLI LLTNNPLIRIDSSAFASLTNVGHLILPSGIRSIEQDAFAGMDTVGLLKLAYMDLKEVA PFTFRGLSNVLLLTLQESDLGVICADAFTGLSQVETLQILNNKIDSIEELNFTSTAAI KHLKFFGNHVLETPDPNAIIVDGVEHLQLVSNHFPCGCHIHTLLDGPLAEGAHNLSDF LQKNYCISPLEVNGRVMSELDIDSIGRCSDQLTKGNLGSSAASLALGINSMLLIAVAS CAEWRHVRLLANRLAQLLGHVAWRRRRKRRKGN" misc_feature 660..731 /gene="LOC108057298" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature <663..1487 /gene="LOC108057298" /note="Leucine-rich repeat (LRR) protein [Transcription]; Region: LRR; COG4886" /db_xref="CDD:443914" misc_feature 696..1079 /gene="LOC108057298" /note="BspA type Leucine rich repeat region (6 copies); Region: LRR_5; pfam13306" /db_xref="CDD:463839" misc_feature 732..803 /gene="LOC108057298" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 804..875 /gene="LOC108057298" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 876..947 /gene="LOC108057298" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 948..1019 /gene="LOC108057298" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 1020..1088 /gene="LOC108057298" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 1089..1160 /gene="LOC108057298" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 1161..1232 /gene="LOC108057298" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 1233..1304 /gene="LOC108057298" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 1305..1364 /gene="LOC108057298" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" ORIGIN 1 acgcccccgc aaggcgtagc aaaaaggggc tggaacagga acaggaggag caggagctgg 61 aaccggaaga agaagcgtaa ataaatatga taaagcttaa gaatatataa taaaggggag 121 aagacagcgg ccgaagagga aggaaagttt aaatgaaata acgcaataga aaaacataaa 181 taactaagga aagagcccaa gaagaagaag aagaagaggc cagcgaagag gagccccaaa 241 aagtaggcaa caaaaaatca gtgaagctgg caggcgatag aaaaaggtga ggcatcattt 301 ccaccatttc gcccccatcc tttccatcca aaggagctcc tcgccaggat aagaaggagc 361 atcaaaggca gaaggagatt caccaaggac ccggacttcg acccggagaa agagcagccg 421 gacaagagag aatagagctc aattacgccg ccaaactgtc gtgtcagcaa caacgtgaaa 481 tgtgcaattc ctggctggtg ctcataattg cgctctccgt tgtcgtctgc ctgtggaact 541 cgcaacaaac cgaaacatcc aaatcatgcc cagccgagtg catctgcttg tcccagactc 601 aagtgctgtg taacacgggc ggcctcgagc agatcccact gcggcagctg ccggcgacgg 661 tggagaacct ggcgctgacc aagaacaact tcccgatcat caagccggac tcgttcgccg 721 gcctgcgggc gctgaagaag ctctcgctgg acggtaacaa catcacgcgg atcaagcagt 781 tcgccttccg cggcctgccg cgcctcaagg agctctccat ccagtacacg ccgctgcaaa 841 tggtcgccca gttcgcgttc gcgggcctgc agaatctctc caccatcctg ctgagccaca 901 accagatcca aaggattgag ggcaacgcct tcgcgggcac ctcgaacatc aagctcatcc 961 tgttgaccaa caatccgctc attcgcatcg acagctcggc cttcgccagc ctgacgaacg 1021 tgggccattt gatattgccc tcgggcatcc ggagcatcga gcaggacgcc ttcgccggca 1081 tggacacggt gggcctgctg aagctggcct acatggacct caaggaggtg gctccgttca 1141 cctttcgcgg cctctccaat gtcctgctgc tcaccctgca ggaatcggat ctcggtgtga 1201 tctgtgccga cgccttcacc ggcctctcgc aggtggaaac gctgcagata ctgaacaaca 1261 aaatcgactc gatcgaggag ctgaacttca ccagcacggc ggccatcaag cacttgaagt 1321 tcttcggcaa tcatgtcctg gagacgcccg atccgaatgc tatcatcgtc gacggggtgg 1381 agcatctgca gctggtgagc aaccactttc cctgcggctg ccacatccac accctgctcg 1441 atggtccgct ggccgagggc gcccacaatc tgagcgactt cctgcagaag aactactgca 1501 tatcgccgct ggaggtcaac gggcgggtga tgagcgagct ggacatcgac tccattggcc 1561 gctgctccga tcagctgacc aagggcaatc tgggcagctc ggcggcctcg ctggccctcg 1621 gcatcaactc gatgctgctc atcgcggtgg ccagctgtgc ggagtggcgc cacgtccgcc 1681 tgctggccaa ccggctggcc cagctactgg gtcacgtggc ttggcggagg cggcggaaac 1741 ggcggaaggg caactaggcg gaggtctcct gcaacgatta ccagagagaa ctgcagacta 1801 aatctcaaga accgaattca agcatcatct tccccctcca ttgaatcccc ttctgattac 1861 cgactgccag ggtatctgtc atctactata tacaaacgta gagtgaaaaa aaaaaaacga 1921 aaaagtccta cagattgcca aatgtaaaac gctgcagttt tgctatcatc atgcgaaatc 1981 tgagagtctg atgccgttga tgtcgctcga actggaacta ccctgcgcta ctaccatcct 2041 ttcccgaaaa agtgctgaac cctaggctaa tcctgcaacc aggatactgc atcctgcata 2101 tcctgggccc gagggcccaa ctagttgttt gccagttgtt tacgttttac attttacgtt 2161 tctgttgcca tttcgtttct gtttgcgtta aaatgtgaaa cgcgggtagc ggcagtcggc 2221 gaaatgcgaa ttgcgaaatg ctaaatccac aatacaaaat gcggactgcg gattgaacac 2281 taaattatta tatcaaattt cgagtcaaat gtgtgtaaat cataaagtga acacatatgg 2341 acggcgggca tagacaaaat ccgatgtaag cgtatttaag catgtgtatt tacttctatt 2401 tgtatatgta tatgtgacag ttgaatatat atatgagaca tagctatata acattttttt 2461 tttttgatca tagctgatag ttcataaata actgggatat ttattggcca attaataaag 2521 atgcaattta tacaaacatc tatatatgtg aaaataaaca acggcagaga cataatctgc 2581 attacctagc cagatggata aagtatatat gcacatatct gtgtgtgtgc gcatagcaag 2641 tctagtcaat taatgccact gtatcttgta tctttgtatc tacgatagct gcagacaaac 2701 atttgtactt attttataaa tcgagtgaaa ctatacgagt ccgctatata cggagcacaa 2761 cacactatta ttatatggat aaatatgtga taaaacgttt gcaatgccac aaactcacag 2821 atctgagcaa atggagaatg gaaaatgggc taaaaatagc ccccttttcc ccgcactgca 2881 ggctgtacat atcaacaggt tacaggtgga caactcttat caattactaa cttgcttatc 2941 atccgaaatg taacccctat gcggagcaaa gataactgcc atgtgtacat tttatagcga 3001 ggcccccaaa aactaaccca actatattta taagtcagcc tccgaaacgc aattcgaact 3061 aacacaaaaa attaaatgta aattgaaaca atttgtccaa acaatttgcc gcaaatcaaa 3121 tgaaacaaaa ccaaacaacc gatttgttcc ggcaaatgag aaataaaaat gaaaaatgag 3181 aaatgtttcc aagctaattg ttttctaggt gtatgagtat ctgtatctgt gtgctggcct 3241 gcgtttgtgt ttgtgtttgt gttcgtgtgt gagtgcgtat gtgtgcgtgt ttgcatatcc 3301 ttttttgagg cccaggagaa ttgttattcc aattagacgt gttaacgagc gaaagcattg 3361 cgcaaaaaac aagaaaacaa aaaagaaacc cacatacaat atatagtata cacttagata 3421 tacaattatt aattaacgac tagctatcga agattttttt tgtcacccat aatatttatg 3481 agaaacattt cctcgtcaac cctaaagctg ctataaaaat ccaactctaa taccaaacta 3541 ataatactta tagtgaaaag taaaaataaa atatagaaag tatcgattgt taatactgcg 3601 ataacgtctt cgattaaatg taaaatagca taaatgtgtg acctaagtaa gttcccatca 3661 tcattatttt atgtctagac ttgagaatcg aatcgaatgg gaggagaatc gaatgagaga 3721 gccatcataa gcacattgca ttataatact aaatatatat aatgttaact gtaggctaaa 3781 tatgagatat acaggtgcat aacgataacg ataacgataa tgagatacca agctacaaag 3841 aaaactaaat aaaatgaaag cgaaaacgaa aacgaatacc aaactaaaac ctatgaaaaa 3901 ttgataatct ataataataa taataatcaa acctactatc gatgaggaag ccaaaaaaaa 3961 ccaaaaaaaa aaacagaatg agcaaaacaa aaacaaacat aa