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LOCUS XM_044393823 3393 bp mRNA linear INV 09-DEC-2024 transcript variant X4, mRNA. ACCESSION XM_044393823 VERSION XM_044393823.2 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_044393823.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3393 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3393 /gene="sol" /note="small optic lobes; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108055917" CDS 238..3039 /gene="sol" /codon_start=1 /product="calpain-D isoform X3" /protein_id="XP_044249758.1" /db_xref="GeneID:108055917" /translation="MWTCIKCSYAYNRLWLQSCEMCEAKLEQQLLQQQQQQQAVVSFG QEKAAAPRDEPWTCKKCTLVNYSTAMACVVCGGSKLKSISSIEDMTLRKGEFWTCGHC TLKNSLHSPVCSACKSHRQPQLSISSLEAVRERPDGQSYEEQDAVAAAAAGGGGSTTS NSEVKAPAAAALNLPLASVALPLPLLQIPTTSAAGLRGSRSPSPRMQPSQQQQQRSSS STSSSSGAIPKRHSTGGSIVPRNISLAALASSYNLQQQSAASAPESSSLKKWQCPACT YDNCAASVVCDICSSPRGLASAVLGEALARKSIRVALTPADIRQESKLMENLRQLEET EALTKWQNIIQYCRDNSELFVDDSFPPAPKSLYYNPASGAGEGNPVVQWRRPHEINCD GGAYPPWAVFRTPLPSDICQGVLGNCWLLSALAVLAEREDLVKEVLVTKEICGQGAYQ VRLCKDGKWTTVLVDDLLPCDKRGHLVYSQAKRKQLWVPLIEKAVAKIHGCYEALVSG RAIEGLATLTGAPCESIPLQASSLPMPSEDELDKDLIWAQLLSSRCVRFLMGASCGGG NMKVDEEEYQQKGLRPRHAYSVLDVKDIQGHRLLKLRNPWGHYSWRGDWSDDSSLWTD DLRDALMPHGASEGVFWISFEDVLNYFDCIDICKVRSGWNEVRLQGTLQPLCSISCVL LTVLEPTEAEFTLFQEGQRNSEKSQRSQLDLCVVIFRTRSPAAPEIGRLVEHSKRQVR GFVGCHKMLERDIYLLVCLAFNHWHTGIEDPHQYPQCILAIHSSKRLLVEQISPSPHL LADAIISLTLTKGQRHEGREGMTAYYLTKGWAGLVVMVENRHENKWIHVKCDCQESYN VVSTRGELKTVDSVPPLQRQVIIVLTQLEGSGGFSIAHRLTHRLANSRGLHDWGPPGA THCPPIENVHGLHAPRLIT" misc_feature 241..303 /gene="sol" /note="RanBP2-type Zn finger [structural motif]; Region: RanBP2-type Zn finger" /db_xref="CDD:275376" misc_feature 391..474 /gene="sol" /note="Zn-finger in Ran binding protein and others; Region: zf-RanBP; pfam00641" /db_xref="CDD:395516" misc_feature 403..462 /gene="sol" /note="RanBP2-type Zn finger [structural motif]; Region: RanBP2-type Zn finger" /db_xref="CDD:275376" misc_feature 520..603 /gene="sol" /note="Zn-finger in Ran binding protein and others; Region: zf-RanBP; pfam00641" /db_xref="CDD:395516" misc_feature 526..585 /gene="sol" /note="RanBP2-type Zn finger [structural motif]; Region: RanBP2-type Zn finger" /db_xref="CDD:275376" misc_feature 1039..1116 /gene="sol" /note="Zn-finger in Ran binding protein and others; Region: zf-RanBP; pfam00641" /db_xref="CDD:395516" misc_feature 1045..1104 /gene="sol" /note="RanBP2-type Zn finger [structural motif]; Region: RanBP2-type Zn finger" /db_xref="CDD:275376" misc_feature 1255..2238 /gene="sol" /note="Calpain-like thiol protease family; Region: CysPc; smart00230" /db_xref="CDD:128526" misc_feature order(1489..1491,1987..1989,2047..2049) /gene="sol" /note="catalytic site [active]" /db_xref="CDD:238004" polyA_site 3393 /gene="sol" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ttttattatt atttctgtgc gctatgagtt gtgtgctttt agttgtttaa gcaaatttct 61 gttaccacat gtgtatgatt tatatattta caactgattt gccagcagat tgtcataact 121 tttgcgagca cgcatgatcc gggtagcagc agtcgcctga taatagccac atccgcaaca 181 gcagcagcga ccacatcctc gggagcggcg atagttgcag caggcagccg cagcaagatg 241 tggacatgca tcaaatgttc ctatgcctac aatcgactct ggctgcagag ctgcgagatg 301 tgcgaggcga agctggagca gcaacttctg cagcagcagc agcagcaaca ggcagttgtg 361 tcctttggcc aggagaaagc agcagccccc cgcgacgagc cgtggacctg caagaagtgc 421 accctggtca actactcgac ggccatggcc tgcgtggtct gcggcggctc caagctgaag 481 agcatctcct ccatcgagga catgacgctg cgcaagggcg agttctggac ctgcggccac 541 tgtacgctga agaactcgct ccactcgccg gtgtgcagtg cctgcaagtc gcaccgccag 601 ccgcagcttt cgatttcctc gctggaggcg gttcgcgagc gacccgatgg ccagtcgtac 661 gaggagcagg atgcagtggc agcagcggcg gcaggaggag gaggtagcac aactagtaat 721 agcgaggtga aagcaccggc agcagcagct ctcaatctgc cgctggcctc ggtggcgctg 781 cccctgccgc ttctgcagat tccaacgacc tcggcggctg ggctgcgtgg ctcgcgcagt 841 ccctcgccca ggatgcagcc atcgcagcag cagcagcagc gaagttccag ctccacctcc 901 tcctcctcgg gcgccatacc caaacggcac agcaccggcg gctccattgt gcccaggaac 961 atctcgctgg ccgctttggc ctccagctac aatctgcagc agcaatcggc agcttctgct 1021 cccgagagtt ccagcctgaa gaagtggcag tgcccggcct gcacgtacga taattgtgcc 1081 gcttccgttg tctgcgacat ttgctccagt ccgcgcggcc tggcgagcgc cgtgctgggc 1141 gaagcgctgg ccaggaagtc gatacgcgtg gcgctcaccc cggcggacat tcggcaggag 1201 agcaagctaa tggagaacct gcgccagctg gaggagaccg aggcgctgac caagtggcag 1261 aacatcattc agtattgccg cgacaacagc gagctcttcg tcgacgattc gtttccgccg 1321 gcgccgaaga gtctgtacta caatccggcg agcggagcgg gcgagggcaa tccggtggtg 1381 cagtggcgcc ggccgcacga gatcaactgc gacggcggtg cgtatccgcc gtgggccgtc 1441 ttccgcacac cgctgccctc ggacatttgc cagggcgtcc tgggcaactg ctggctactc 1501 agcgccctcg ctgtgctggc ggaacgcgag gatctggtga aggaggtgct ggtcaccaag 1561 gagatatgcg gccagggagc gtaccaggtg cgcctctgca aggacggcaa gtggacgacc 1621 gtgctggtcg atgatctgct gccgtgcgac aagcgcggcc atctcgtcta ctcgcaggcc 1681 aagcgcaagc agctctgggt gccgttgatc gagaaggccg tggccaagat ccatggctgc 1741 tacgaggctc ttgtgtcggg ccgagccatc gagggcctgg ccacgctgac gggggcgccc 1801 tgcgagagca ttccgctgca ggcgagcagc ctgcccatgc ccagcgagga tgagctggac 1861 aaggacctga tctgggccca gctgctgagc tcgcgctgcg tgcgattcct catgggcgcc 1921 agctgcggcg gaggcaacat gaaggtggac gaggaggagt accagcagaa gggtctgcga 1981 ccgcgacacg cctactcggt gctggatgtg aaggacatcc agggacatcg gctgctcaag 2041 ctgcgcaatc cctggggtca ctattcgtgg cgcggcgact ggtcggatga ctcctcgctg 2101 tggacggacg acctgcgcga tgctctaatg ccgcacggcg ccagcgaggg cgtcttttgg 2161 atctcgttcg aggatgtgct caactacttc gactgcatcg acatctgcaa ggtgcgctcc 2221 ggctggaacg aggtgcgtct gcagggcact ttgcagccct tgtgctccat ctcctgtgtg 2281 ctgctcaccg tgctggagcc gacggaggcg gagttcacgc tcttccagga ggggcagcgc 2341 aactcggaga agtcgcagcg ctcgcagctg gacctgtgcg ttgtgatatt ccgcacccgc 2401 tcgccggcgg cgccggaaat tggtcgtctg gtggagcaca gcaagcggca ggttcgcggc 2461 tttgtgggct gccacaagat gctcgagcgg gacatttacc tgctggtctg cctggccttc 2521 aatcactggc acacgggcat cgaggatccg caccagtatc cgcagtgcat cctggcgata 2581 cacagctcca agcggctgct cgtcgagcag atcagtccct cgccgcacct cctcgccgac 2641 gccataatca gtttgaccct gaccaagggt cagcggcacg aggggcgcga gggcatgacc 2701 gcctactacc tgaccaaggg ctgggcgggt ctggttgtga tggtggagaa ccggcacgag 2761 aacaaatgga tccatgtgaa gtgcgactgc caggagagct acaatgtggt gtccacgcgg 2821 ggcgaactca agacggtgga ctcggtgccg ccgctgcaga gacaagtgat catcgtgctc 2881 acccaactgg agggcagtgg cggcttcagc atcgcccacc ggctgaccca tcggctggcc 2941 aactcgcgcg gccttcacga ctgggggccg cccggcgcca cccactgtcc gcccatcgag 3001 aatgtccacg gattgcacgc cccgcggctg atcacctaga actctagtcg attttttgtc 3061 aacgtatcac tcacacacac atcacagcga aggaaaacca aaagctaaaa ccaaccatca 3121 ggcaaaacaa agcatatata tgtgtataga tccgtgcaga tatatctgat atatgtgtgt 3181 ttatgtacta aggcgggagc agatcgttcg ggatgcggat gcggatgcag agtccggaga 3241 cctcggcaca attccctcga gatcaaatga tatatgtttt gatttgagcg ccgatgatta 3301 tggattatat agatatgtat tgtgaattta agtgcatcca atattaatat gtgtattgtt 3361 ttaaaaataa agactacaag ttataaaagc caa