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LOCUS XM_044393821 4472 bp mRNA linear INV 09-DEC-2024 variant X4, mRNA. ACCESSION XM_044393821 VERSION XM_044393821.2 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_044393821.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4472 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4472 /gene="boi" /note="brother of ihog; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108055811" CDS 716..3733 /gene="boi" /codon_start=1 /product="interference hedgehog isoform X2" /protein_id="XP_044249756.1" /db_xref="GeneID:108055811" /translation="METGIRLAVVLLLTISIWTIHSQANDSGSSAGTTLGVLFERAPE SAVAPKGDEVVFECELNLKPDRLEWRFRRSGSEPEPYRYLRPSAGYNVTSANEGLAWR LRIYVSAQTAGDYQCVAWYGPGAVASTPARLALVSIALDGGGGQVGSGPRGSIRWSVA PKNCLLIRCGSVVSNPPAIWSFYRNGKKLPQSELLPGAAGALVLDTVTAKDAGNYSCV ATNSITGDELRLPQTIELRVDYTDRTPPYFLQRPPTEYSARPGETVVLECPGVGSPRP RVIWSSPNVVGIYNNRSKILPYGLQITDLKPEDQGSYICMLDNGIAPPIDHTIKLSVL QRPTILRGPAATLINESNPLVLECSASGNPQPDIYWLINGEEATQDPEAVVDNRSLQL RRVQKRHAGVVQCFAKNILGETSKGNILRVNPLEITGEDEEPLGGVPMWPVHESNGGM GSSSTPSGGSKNKGGRRKYKASMVPPSKPNVTRLSDESVMLRWSVPQNSGLQITFFKV QYRRLGDGKNRRENWQTTSDNIPYGNSYGSGSGSGSNNHWRQRNRDRDYEMGNPPKNF TSSVTGLTAGKYYRFRIVAVYSNNDNKEGNTSVKFFLQSGAARSNLPVPELREVEPLS EATVVLHWSLMASEKSEDIDGYYAYYRPADSAAEYLKATVDGGRSRSFKIDLLRPGTA YEFKLQSFNSDAASEFSAIRQARTKKTTDQSASSASSTPLPGHKSADQQPNSMYPVIA GAAGGGLLLLVASLMVCMCLRRRENQQPEDENKPQLEHIQADFVTSAVLGVGGHHKSG DVRRLNGVIPRMNITPNPLAQETASDKTNGLHHAQPYHPPGTPTLMHKRLDHYHQQQA PPVPPHSAYYQQAPTHSHAHQPSPMMERSARGHQQQHHLEDNGTPTPSRIPSLRRQRR TSGSQPVHNSHSNLNLNLSHHNNNNLPSHHQHLHHHPGHPGHPNGLVGIPIVPGSPRV QRSPMPSRAMIKRTRLGSHTDNISSGSLNSIEV" misc_feature 842..1114 /gene="boi" /note="Immunoglobulin like; Region: IG_like; smart00410" /db_xref="CDD:214653" misc_feature 1208..1390 /gene="boi" /note="Immunoglobulin domain; Region: Ig; cd00096" /db_xref="CDD:409353" misc_feature 1208..1222 /gene="boi" /note="Ig strand B [structural motif]; Region: Ig strand B" /db_xref="CDD:409353" misc_feature 1250..1264 /gene="boi" /note="Ig strand C [structural motif]; Region: Ig strand C" /db_xref="CDD:409353" misc_feature 1313..1327 /gene="boi" /note="Ig strand E [structural motif]; Region: Ig strand E" /db_xref="CDD:409353" misc_feature 1355..1372 /gene="boi" /note="Ig strand F [structural motif]; Region: Ig strand F" /db_xref="CDD:409353" misc_feature 1472..1714 /gene="boi" /note="Immunoglobulin like; Region: IG_like; smart00410" /db_xref="CDD:214653" misc_feature 1505..1519 /gene="boi" /note="Ig strand B [structural motif]; Region: Ig strand B" /db_xref="CDD:409570" misc_feature 1544..1558 /gene="boi" /note="Ig strand C [structural motif]; Region: Ig strand C" /db_xref="CDD:409570" misc_feature 1607..1621 /gene="boi" /note="Ig strand E [structural motif]; Region: Ig strand E" /db_xref="CDD:409570" misc_feature 1649..1666 /gene="boi" /note="Ig strand F [structural motif]; Region: Ig strand F" /db_xref="CDD:409570" misc_feature 1778..1951 /gene="boi" /note="Immunoglobulin domain; Region: Ig; cl11960" /db_xref="CDD:472250" misc_feature 1778..1789 /gene="boi" /note="Ig strand B [structural motif]; Region: Ig strand B" /db_xref="CDD:409367" misc_feature 1814..1828 /gene="boi" /note="Ig strand C [structural motif]; Region: Ig strand C" /db_xref="CDD:409367" misc_feature 1877..1891 /gene="boi" /note="Ig strand E [structural motif]; Region: Ig strand E" /db_xref="CDD:409367" misc_feature 1919..1936 /gene="boi" /note="Ig strand F [structural motif]; Region: Ig strand F" /db_xref="CDD:409367" misc_feature <2135..>2917 /gene="boi" /note="Fibronectin type 3 domain [General function prediction only]; Region: FN3; COG3401" /db_xref="CDD:442628" misc_feature 2570..2833 /gene="boi" /note="Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all...; Region: FN3; cd00063" /db_xref="CDD:238020" misc_feature order(2798..2803,2807..2812) /gene="boi" /note="Cytokine receptor motif [active]" /db_xref="CDD:238020" misc_feature <3203..3442 /gene="boi" /note="N-terminal domain of Kruppel-like factor (KLF) 1, KLF2, KLF4, and similar proteins; Region: KLF1_2_4_N; cl41729" /db_xref="CDD:425360" polyA_site 4472 /gene="boi" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 aagtgcaaaa gtcttgggaa taattgccag cgagagagag cgagcaaagt gcgtgtgcca 61 agtttgtttt tatttttaaa acggcaaccg gctaaaaagg cagcggcgtc gcgtagaaaa 121 cacctaataa ctataaatta tggggctccc tcccggtggg atctcaatag tttccgaatg 181 tttgtcaaaa agcggggaaa tggaaatgga tccccagaca tacttatatc gaatgtcgga 241 cagtcggcgg atgtgactaa gagccaccaa attcaattta acccgatgcg atatgcgatg 301 ccaatccgtg ttctcgtgtg tatatttgaa aggctttaaa aatgccataa cattttaata 361 ggtttctttt atttggtttg cctttcctct cggctcgcat tgttctttta ctacttgttt 421 ttagttcgat gggaaaaatc gcaagaatgc cgcctcaagt gatcaaaatc taatcaaaat 481 atttaccgtt cgtttagcgt gcgacgagaa gaggagagga gattggagag aagtacgtac 541 ttacagcgag gatttacctg cccttcgaaa tcgcagaaaa gccaacagtt gacagcagca 601 gaatgcagtc ctaaggcggc agatcagatc cgactggaaa gagacgggga taccgctgag 661 gaaagagacg gagggactag cgagtgacaa agagtacaaa agacccacat tagagatgga 721 aactggaatc cggctagctg tggtcctcct actgaccatc agtatctgga caatccacag 781 ccaagccaac gacagtggtt cctccgcggg aaccaccttg ggcgtcttgt tcgagcgggc 841 tcccgagtcg gcggtggctc ccaagggcga cgaggtggtc ttcgagtgcg aactgaatct 901 caagccggat cgcctggagt ggcggttcag acgcagtggc tccgagcccg aaccgtatag 961 atatttgagg ccctcggcgg gctacaatgt gacgagcgcc aacgagggtc tggcctggag 1021 actgcggatc tatgtgagtg cccagacggc aggtgactac cagtgcgtgg cctggtatgg 1081 tcccggtgcc gtggcctcca cgcccgcccg tctggccctt gtctcgatcg ccctggacgg 1141 tggtggcggt caggtgggat caggccctcg aggctccata cgctggagtg tggcgcccaa 1201 gaactgcctg ctcatccgct gtggcagcgt ggtatccaat cccccggcca tctggagttt 1261 ctaccggaat ggcaagaagc tgccgcagtc ggagttgctt cccggagcgg cgggagcgtt 1321 ggttctggac acggtcaccg ccaaggatgc gggcaactac tcgtgcgtgg ccacaaattc 1381 tataacaggc gatgagctaa ggctgccgca gaccattgaa ctgagggtgg actacacgga 1441 ccggacgccg ccgtacttcc tgcaacgtcc gcccaccgag tactcggctc gtcccgggga 1501 gacagtggtg ctcgagtgtc ctggcgtcgg atctccgcgg ccccgagtca tctggagtag 1561 tcccaatgtg gtggggatct acaataacag gagcaagatt ctgccctacg gcctccagat 1621 caccgacctg aagcccgagg atcagggatc ctacatctgc atgctggaca atggcattgc 1681 gccgcccata gatcacacca tcaagctgag tgtcctgcag cgtcccacga ttctgagagg 1741 tcctgctgcc acgctgatca acgagagtaa tcccctggtg ttggagtgct ccgcctcggg 1801 gaatccgcag ccggatatct actggctcat caacggcgag gaggccaccc aggatccgga 1861 ggccgtggtg gataaccgga gtctgcagct gaggagggtg cagaagcgcc atgccggagt 1921 ggttcagtgc ttcgcgaaga acattctggg cgagaccagc aagggcaaca ttctgcgcgt 1981 gaatcccctg gaaatcactg gcgaggatga ggaaccactt ggcggagttc ccatgtggcc 2041 ggttcatgag tctaacggtg gaatgggatc ctcgtcgacg ccatctggtg gttccaaaaa 2101 caagggaggc cggaggaagt acaaagccag catggtgcct ccgtcaaagc ccaatgtcac 2161 ccgcctgtcg gacgagtccg tgatgctccg ctggagcgtt ccgcagaact cgggactgca 2221 gatcaccttc ttcaaggtgc agtaccgtcg tctgggcgac gggaagaatc ggcgggagaa 2281 ctggcagaca accagtgata atatccccta tggaaatagc tacggatcgg gatccggatc 2341 gggaagcaat aaccactggc gacagcgcaa cagggacagg gactacgaga tgggcaatcc 2401 gcccaagaac ttcacctcct cggtcaccgg actgactgcc gggaagtact atcgcttccg 2461 gatcgtggcg gtctattcga acaacgacaa caaggagggc aacacctcgg tcaagttctt 2521 cctgcaaagc ggagcggcca ggtcgaatct gccggttccc gagctccgcg aggtggagcc 2581 gctgtccgag gccaccgtgg tgctccactg gtcgctgatg gcctctgaaa agagtgagga 2641 tatcgatggc tattatgcct actacagacc cgccgattcg gcggcggaat atctaaaggc 2701 caccgtggac gggggaagaa gcaggagctt caagatagat ctcctgcgac ccggaaccgc 2761 ctacgagttc aagctgcagt cgttcaattc cgacgcagcc tccgagttca gtgcgataag 2821 acaggcgagg accaaaaaaa ccactgatca aagtgcttcc tctgcttcat ccaccccact 2881 gcctggccat aaatcagcgg atcagcagcc gaactccatg tatccagtga ttgcaggagc 2941 tgccggcggg ggactgctgc tcctcgtcgc ctccttgatg gtctgcatgt gtctcaggcg 3001 acgggagaac caacaaccag aggatgagaa caaaccgcaa ttggagcaca tccaagcgga 3061 ctttgtgacc tccgccgttc tgggagtggg tggccatcac aagagcggcg atgtgaggcg 3121 tttgaacgga gtgattcccc ggatgaacat cacccccaat ccgctggccc aggaaacggc 3181 ctccgataag acgaatggcc tgcatcatgc gcagccgtat catccgcccg gaacgcccac 3241 gctgatgcac aagcgactgg accactacca ccagcagcag gcgcctccgg tgcctccgca 3301 ctccgcctac taccagcagg cgcccaccca cagccacgcc caccagccgt cgcccatgat 3361 ggagcgcagt gctcggggtc accagcagca gcatcattta gaggacaacg gcacgcccac 3421 gccctcgagg attccctcgc tgaggcgcca gcgaagaacc tcgggcagcc agccggtgca 3481 caacagccac agcaatctca acctgaacct gagccaccac aacaacaata acctgccatc 3541 gcaccaccag catctgcacc accacccagg tcaccctggt catccgaatg gcctggtcgg 3601 gatacccatt gtgccgggca gtccgcgggt ccagagatct ccgatgccca gcagggcgat 3661 gatcaagagg acgcgactgg gcagccacac ggacaacatc tcctcgggca gcctgaacag 3721 tattgaggtg tgattgagga tgattggagt atcaagagca tcggaagcga aaacagttcc 3781 cctacagaca aacagacagc ttcaactagg cttaatcaac cgaaaatcga cgtgtattat 3841 tatgcttatc catagaaacg ggccggcaga gcagtcgaat gcactcgaat actagttttt 3901 aagcagtcga taaaaatttg gatagatgaa gtcttgagct agaaccaaaa attgtactaa 3961 atttgaagat ttcatttcat ttgctaagaa aaataatgga agcttagacg ttgaacgcta 4021 aagctgcttg attttgattt gtttaaaaat ttcctattca atttgattgg aatgagaaga 4081 agaagaatta ttaataatat actttttttc ctgtttctgc cggccagata gtcagtagaa 4141 ttattaattt gtattttttt tttaccgatt gattagtgca tcccccaggg gtcccaaatt 4201 gcaactcgac taagccctgt agcatagtgt tatttattta ttacagtgta agcgtcaccg 4261 actcgaattg attagttcaa tcaggataag cactctaact agcagcctaa ttagctcgta 4321 aggcaaacca actatctagc attaaagtaa gacactttaa aatgtgacta atatcccgac 4381 attgtagcgt aaaggaaaag catcctaaac tatttttaag ttcatagaca gctgagttct 4441 aaacgtattt ttgccaattt tgaaattaaa aa