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LOCUS XM_044393436 4502 bp mRNA linear INV 09-DEC-2024 X1, mRNA. ACCESSION XM_044393436 VERSION XM_044393436.2 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_044393436.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4502 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4502 /gene="X11L" /note="X11L; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108056729" CDS 217..3645 /gene="X11L" /codon_start=1 /product="uncharacterized protein X11L isoform X1" /protein_id="XP_044249371.2" /db_xref="GeneID:108056729" /translation="MNLSNSCSDSSNESMVNPMQQQQQQERYVWEMRTRSPNVTPAST VLNSPDLNAELSYVPLQGLSPTSGGGGNGGGGTGGQGAARDSSNYYYQRPHLHQIRLG RSPGSQFETRDVLPQGLASPGSPTDVGKADGQCLRDGEIVVFDDIDTNWMNKPSSGGH RTPGSNEDVLKVTKMIGQLPIAEYEGSPRRFGSQTNAGGAPPPRKRPPGFPQRVSPTT SGVNNATASAKASVGNLIDLIDHEEEKTPTFDYLYEFSETRKVLEEFFKANPEDYAAE SGDDIASSQQQEYPATPMEQAYIGQRLARIPKDELYMVHRSPIKKPPNDQNPATAYQE HNDIELYIDSNSRSSGDLADTELEANLRRHSRNFTLSPETTDYDSNCGDLDSLSNDIN CPTDYGKLYTSMPVLEDGLSSGHASDTENNVSVVCDQKQSSQSQFQPVHEHNGNGERL ENGDYNVMSASMATLTTDASQSALISDFASLPMPPAPAPVPPPSSSSPPQIEIADASE SMAMAAEADNPLDSHYGAVYAAALTEKSTALPSQAASEIQEAMKEIRSALQRAKTQPE KLKFCDEVLPTDPDSPVWVPRKTTAVSVAQAAATAADEEPDTDLETDRLLGQQRHDEQ DFFADQQLADSNANEGTEIASNGHLNGMAVDNNNPNPNPMGNAKPQTYSTATIRQGIG TSLTPNSPDICQIVGTADISISSPEKLQFSKSPTGSIKSLKDSANSDKKAKSRNKEGL LEPKVLIEGVLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIKAPEGESQPSTEVD LFISTEKIMVLNTDLKEIMMDHALRTISYIADIGDLVVLMARRRFVPNSVVDPATASP LGDPLPSAAAAGMGESDESPPKEQALSKHNRTPKMICHVFESDEAQFIAQSIGQAFQV AYMEFLKANGIENESLAKEMDYQEVLNSQEIFGDELEIFAKKELQKEVVVPKAKGEIL GVVIVESGWGSMLPTVVIANLMSSGAAARCGQLNIGDQLIAINGMSLVGLPLSTCQSY IRNAKNQTAVKFTVVPCPPVVEVKILRPKALFQLGFSVQNGVICSLLRGGIAERGGVR VGHRIIEINNQSVVAVPHDTIVKLLSSSVGEILMKTMPTSMFRLLTGQETPIYI" misc_feature 2443..2994 /gene="X11L" /note="X11-like Phosphotyrosine-binding (PTB) domain; Region: PTB_X11; cd01208" /db_xref="CDD:269919" misc_feature order(2479..2481,2713..2715,2905..2907) /gene="X11L" /note="putative phosphoinositide binding site [chemical binding]; other site" /db_xref="CDD:269919" misc_feature order(2533..2535,2680..2682,2689..2706,2929..2931, 2962..2964,2971..2973) /gene="X11L" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:269919" misc_feature 3094..3345 /gene="X11L" /note="PDZ domain 1 of amyloid-beta A4 precursor protein-binding family A member 1 (APBA1), APBA2, APBA3, and related domains; Region: PDZ1_APBA1_3-like; cd06720" /db_xref="CDD:467203" misc_feature order(3127..3147,3187..3189,3196..3198,3286..3288, 3298..3300,3307..3312) /gene="X11L" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:467203" misc_feature 3376..3594 /gene="X11L" /note="PDZ domain 2 of amyloid-beta A4 precursor protein-binding family A member 1 (APBA1), APBA2, APBA3, and related domains; Region: PDZ2_APBA1_3-like; cd06793" /db_xref="CDD:467255" misc_feature order(3403..3423,3436..3438,3445..3447,3532..3534, 3544..3546,3553..3558) /gene="X11L" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:467255" polyA_site 4502 /gene="X11L" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ccgatatcga agaagaagag actccgatag gcttggatat cgataatcgc tgcgaaggag 61 tgcaataaat atgaattaaa tggcagtggc ccccagtgag gcagcaatcg cagcagcagc 121 agcagcgcat gcagcagcag cagcaacagc agcaccagca gaacagtagt agtcatcatc 181 cccggagatc cccagttgtc cacttgaact ccagccatga acttgtccaa ttcctgcagc 241 gacagcagca acgagtccat ggtcaatccg atgcaacagc agcagcagca ggagcgatat 301 gtgtgggaga tgcgcacccg tagtccaaat gtaacgccag ccagcacggt gctaaattcg 361 ccggatctca atgccgagct gtcctacgtt ccgctgcagg gtttgtcacc aacgagcgga 421 gggggaggaa acggaggagg aggtactggt ggtcagggtg cggcccgaga ttccagcaac 481 tattactatc agcgaccgca cttgcatcag attcggctgg gcagaagtcc gggcagccaa 541 ttcgagacgc gggatgttct gccacagggt ctggccagtc ccggctcgcc gacggatgtg 601 ggcaaagcgg atggccagtg tctgcgggat ggtgagatcg tggtcttcga cgacatcgac 661 accaactgga tgaacaagcc atcgagtggt ggccaccgaa cgccgggcag caacgaggat 721 gttctgaaag tgaccaagat gattggccag ctgcccattg ccgagtacga gggatcaccg 781 cgacgatttg gtagtcaaac gaatgcagga ggagcaccgc caccgcgaaa acgtccgccg 841 ggcttcccgc aaagggtttc gcccacaacc agtggcgtga ataatgcgac tgcctcggcc 901 aaagcatcgg tgggcaacct aatcgatctg atcgaccacg aggaggagaa gacgcccact 961 ttcgattacc tgtacgagtt ctcagagacg cgaaaggtgc tggaggagtt cttcaaggcg 1021 aatccggagg actacgccgc ggaaagtggc gacgatatag ccagttcgca gcaacaggag 1081 tacccagcca cgcccatgga gcaggcatat attggtcagc ggctggcgcg aatacccaaa 1141 gatgagctct acatggtgca ccgttcgccc atcaagaagc caccaaatga ccaaaatcca 1201 gcgacggcct accaggagca caatgacatc gagctgtata tcgattcgaa tagtcgcagc 1261 agcggcgatc tggcggacac cgagctggag gcaaatttgc gtaggcattc gcgcaacttt 1321 accctttcgc cggagacaac ggactacgat tcgaattgcg gcgatctgga tagtctgtcc 1381 aatgacatca actgtcccac ggattatggc aaactgtata cgagcatgcc cgtcctggag 1441 gatggcctga gcagtggtca tgcctccgac accgagaaca atgtctccgt ggtctgtgac 1501 caaaagcagt cgtctcagtc gcaattccag ccggtccacg agcacaacgg aaacggcgag 1561 cggctggaga acggagacta caatgtgatg agcgccagca tggccacgtt gaccacagat 1621 gcctcgcaat cggcgctgat aagcgacttt gcctcgctgc ctatgccacc ggcaccagct 1681 ccagttccgc ccccttcatc atcatcgccg ccccaaattg agatcgccga tgccagtgaa 1741 tccatggcca tggccgcaga ggctgataat ccgctggaca gtcactatgg tgccgtttat 1801 gcagccgctc taacagaaaa gtcaactgct ctgccatcac aggctgcctc ggaaattcag 1861 gaggccatga aggagattcg gtccgccttg cagcgggcca aaacgcagcc ggaaaagctc 1921 aagttctgcg acgaggtgct gcccacagat ccggattccc ccgtttgggt gccgcgcaag 1981 acgacggcgg tctcggtggc tcaggctgcg gcaacggcgg cggacgagga gccagacacg 2041 gacctggaaa cggatcgact actgggtcag cagcggcacg acgagcagga tttcttcgct 2101 gatcagcaac tggcggatag caatgctaac gagggaacag agatagccag caatggacat 2161 ctgaatggca tggccgtcga taacaacaat ccgaatccga atccaatggg caatgccaag 2221 ccgcagactt actcgacggc caccattcgt cagggcatcg gcacctcgct gacgcccaat 2281 tcgccggaca tctgccagat tgttggcacg gcggacatct cgattagttc gccggagaag 2341 ctgcagttta gcaagagtcc cacgggctcc atcaagtcgc tgaaggattc ggccaactcg 2401 gacaagaagg ccaagtcgcg caacaaggag ggtcttttgg aacccaaagt tcttatcgag 2461 ggcgtgctct ttcgggcccg gtatctcggt tcgactcagc ttgtttgcga gggccagccg 2521 accaagtcga ccaggatgat gcaggccgag gaggccgtct ccaggatcaa ggctcccgag 2581 ggcgaaagcc agccgagcac cgaagtggac ctgttcatat caaccgagaa aataatggtg 2641 ctgaacaccg atctcaagga gatcatgatg gaccatgccc tacgcactat atcctatata 2701 gcggacattg gcgatctggt tgtgctgatg gctcgtcgcc gattcgttcc gaatagtgtg 2761 gtggatccag cgacggccag tcccctgggc gatccccttc ccagtgcagc ggcggcggga 2821 atgggtgaat cggatgagtc gccgcccaag gaacaggccc taagcaaaca taatcgcacg 2881 cccaagatga tatgtcacgt tttcgagagc gacgaggcac agttcatagc ccagtccatt 2941 ggacaggcct ttcaggtggc ctacatggag ttcctcaagg cgaacggcat cgagaacgag 3001 agtctggcca aggagatgga ctaccaggag gtgctcaaca gtcaggagat cttcggcgac 3061 gagctggaga tcttcgccaa gaaggagctg caaaaggagg tggtggtgcc caaggccaag 3121 ggcgaaatcc tgggcgttgt gatcgtcgag agcggctggg gctccatgct gcccaccgtg 3181 gtgattgcca atctgatgag ttccggtgcg gctgcccgct gcggtcagct gaacatcggt 3241 gaccagctga tagccatcaa tggcatgagc ctcgtcggat tgccgctgtc cacctgccag 3301 agctacatac gcaatgccaa gaatcaaact gccgtcaagt tcaccgtcgt gccctgtcct 3361 ccggtcgtcg aggtcaagat cctgcgaccc aaggcgctct ttcagttggg ttttagtgtt 3421 caaaatggcg tgatctgtag ccttttgcgt ggcggcattg ccgagcgggg cggagtacgc 3481 gttggccatc gcatcattga gattaacaac cagagcgtag tggccgttcc gcacgatacc 3541 attgtcaagc tgttgtcatc ctcagtgggc gagatcctca tgaagacaat gcccacgtcc 3601 atgtttcgtt tgctcaccgg ccaggagacg cctatctata tataaaccta tataaatatg 3661 caactgttca cacgcctgcg ctggaatcga aaaactataa attcgtcaac tgcaactcga 3721 tcagctttaa gttccatcaa ctgaaaacga atcgatagct aatcgattcg aatatagacc 3781 aattattgga attcgatcag ccttaagttg ataaattgta cactttacat tttccaaaaa 3841 tgtttcttaa atgattcgac aatttgtaaa tcgattgagc cttaaatgag attagttctt 3901 tatcgacaaa tcgttcaact gcccagaatt gatatactgc tatggagatt attaacagag 3961 cttcaaaaga atattcatgt ttttcgctat tcggcccatc tttgtatatg aaaaagactg 4021 aatttaaagc cagtgcgagt gtatgtgagc agtcattgta aagtattcaa aaaaattgta 4081 agcccaaatg tcccaaaaat atatataccc cttatatgta tacctttccc attattccct 4141 cgcatccaca accagtaggc tataagcatt cgattgaatt tacttgcaag caattattta 4201 tgatatgatc taatccatta tttgtcatgt aaattaaccg tactttagtt ctttaactac 4261 atttataatt ttcgataaag agaaacaaaa agcaagacac ttaccttatg ccaaaaaaga 4321 gttagatttc gttacattta ttattgtata gattgtatta tccattgcgg ataagctgga 4381 ttattgcaat accattaccg atatttataa ttaaagatga atagccttag aaaaacgaag 4441 ccatgcctgc aaaacaacaa acaaaataaa tgcatttaaa acgcgtcaga ttaaagcaaa 4501 aa