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LOCUS XM_044393191 6491 bp mRNA linear INV 09-DEC-2024 transcript variant X1, mRNA. ACCESSION XM_044393191 VERSION XM_044393191.2 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_044393191.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6491 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6491 /gene="zld" /note="zinc finger protein zelda; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:108070198" CDS 824..5470 /gene="zld" /codon_start=1 /product="transcription factor Zelda isoform X1" /protein_id="XP_044249126.1" /db_xref="GeneID:108070198" /translation="MTSIKTEMPPLHAAEALAVSSDGGGGGGGGGGSAGGGSGGGTGG SAPATPNATISAAADSSDNQPGTPQPPQQQQLQQPQAQQQQQQPMGTDPQVTGITHQP YATHHMYSAAGGQQQPPQQQQQQQQIYGGLYGGEMQQQQQQQQQGYASSYINSYEQFY QQQQQQQQGSDYAFGVDYAKSAGVRYHPYLQTPTSLGGLPPGGSAQQQQQEEAVPSAV STTTAVAMSPRVVSSSSPTSTSSHLQLGGSASGQTPGSPGGGGASGSGGCKLQCKKCG ILTTNESELQEHIANVHGESPYGSSGYASSPYIKEEMPTPQPPASANPGELLDLDSQK MVYHQQLLQQQQQQQQQQHEAVAGLPLGALPDPLHSMQSMQQRALHSWEHQPQVASVE GLPPYMQQGLGVGLGVDKSPYYSPKQSPYHQSAGVGGATLIKQEYGGHGLIKSEYPDS QHYVDKSFDPTAGGGGAGGSELCASVATSPAEFPSTTTGGPGQESGAGAAPGNGYRGF EPPSSSSVLPANSLTAKAATWKSNEARRPKTYNCTACNKWFTSSGHLKRHYNTTLHKN AVKSSGQPDPATLPISAHHHPARDPVTKPSRRGTAAAAAAAAAAAAAASAGQQQPPVA PPPPANVPPPEPPRSPPDYGGGGGGGGHVAAMSQYSASPSPTQQQQQHHLNHHHQQQQ QANGYANGTANGYGYMQQQVQSTTNASPQHASNNQQQQQQQQHHQQQQQQMPQQHHNS VLNGHPNGLAGPSAPHNNNNTTQMPSSQMRGLLNETTTTPPPPTTTRAPPTTATATAT ATTAATTVATKSEQVEDSNHNNQDNRSHSNSSSSSMATEEAEEQEEDHLQQQQQQHHP QYLLTSRHYHSSTPNSNSSSSSSNTNPNSPHTIYRQEPLETQDFSQPTTPPPPQPLPP MGMLPPMAMDYNMLALDMPMPMPMPTLMHSSMLQCSSTSTTPLATTITTSMPATMQPP QQQLVHHHYHQAVLHQQQQLEQQHQEEEQQQQRELLQLDQQHHQQQQQALILADSLPH SSSSPTSSSPPPPPPIAMPMPLTTITAPPQLLPLQPPPPPHITSTMPMPPTMHMPIMP PPPQCYQQLQPLDPTMSYHTIIGSNSASEGGGGTGSYASDGQILQLMPASLFAPYAPI SPYSVAAQRSPQEGDLPPVHTLTTALHAHQQGGQQEAQTPTLTVLSTPYSPTVSSSRA TPALEMDMVMMQQQQQESYEMEQYHQLQHHQLEQLQQQQQQMMEQQQQQQQQMMADQS QMQLQSQQPSSKKRRGAAAAATPSTTKRRRNSSVGSTSPHSTTLPSGRIKCLECDKEF TKNCYLTQHNKSFHSGEYPFRCQKCGKRFQSEEVYTTHLGRHRTQDKPHKCELCPKQF HHKTDLRRHVEAIHTGLKQHMCDICEKGFCRKDHLRKHLETHNRPRVVGKKSAAAAAA AAAAAANASAVPAVGSIKAAFAAPALALAPTANQMVVNPGLIPASSLSLKRPIDDVAA DDDSLLEEDEDEMEMEMLEEEEEEEEELSDHHLMIKSEFAEEEFQMIEKSIELY" misc_feature 2441..2518 /gene="zld" /note="Zinc-finger double-stranded RNA-binding; Region: zf-C2H2_jaz; pfam12171" /db_xref="CDD:432381" misc_feature 4751..>4876 /gene="zld" /note="N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins; Region: SUF4-like; cd20908" /db_xref="CDD:411020" misc_feature 4760..4825 /gene="zld" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:411020" misc_feature 4760..4825 /gene="zld" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(4775..4777,4793..4795,4814..4816,4820..4822, 4844..4846,4865..4867) /gene="zld" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:411020" misc_feature 4847..4909 /gene="zld" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(4862..4864,4868..4870,4874..4876,4880..4885, 4892..4897,4904..4906,4949..4951,4955..4957,4967..4972, 4979..4984,4994..4996,5036..5038,5042..5044,5048..5050, 5054..5059,5066..5071,5078..5080) /gene="zld" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 4934..4999 /gene="zld" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 5015..5083 /gene="zld" /note="Zinc finger, C2H2 type; Region: zf-C2H2; pfam00096" /db_xref="CDD:395048" misc_feature 5021..5083 /gene="zld" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" polyA_site 6491 /gene="zld" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gtcatttgta tttggaacgc cgtagcagac agaaggacac gggtgaacaa gcgacgaagc 61 gtgcgaacgg agtggagctt agcgcccttt tttgtttcat tttcccccgc tcacaaaagc 121 aacattttgg caacaacatt tcggcaaagc aacaaacaaa tctaaactaa aacaacgcga 181 ttctaaacgc gggaatacac ttggtgtact ccgtaatatt tgtgttcgta aacaattttt 241 ttctgttcga tgcgatcccc gataaacgat aaacaacgcg aattccagtg atcttttgga 301 aaagaaccca aacccaaagc caaagccaaa ctcaccggta aagtggcgag agagtgagag 361 agagatcggg agagagagaa ttctcgcatt cgcattcgca aaaacaaaat tcaaaattca 421 aaattaccca gcatatttcg cattcgtttc gtttcggttc cgatattggt ttcttcagtt 481 cgtattattt atcgagtctg ctgttttgtg tttcttcgcc gagcccagag agcggagaga 541 gcgacggaga gcggagcgaa gcagcagcag cagcaggaga agcagtccaa gtccaacgaa 601 gaagtgccca aggcgaggcg cagataatac aaatacaaaa attaacaact aaaaacaaca 661 agtaaattaa aaacaaaaca aaacgaacgg ctccagaaaa agagccaacg aaaaagggag 721 agagagggag agagaggagg aggaggagca gcagatgatg cgccgctaat cccggagaga 781 gcgcgagaaa tgagaagagg agcaccgaca tatgtagcgg tccatgacga gcattaagac 841 cgagatgccg cccctgcacg cggcagaggc gctcgccgtt agcagcgacg gcggaggggg 901 aggaggagga ggaggaggat cagcaggggg aggatcagga ggcggaaccg gaggcagtgc 961 gcccgccacg cccaatgcca caatcagtgc cgccgccgac tccagtgata accagcccgg 1021 cacgccgcag cccccgcaac agcagcagtt gcaacagcca caggcgcaac agcagcagca 1081 gcaacccatg ggcaccgatc cccaggtgac gggcatcacc caccagccgt acgccaccca 1141 tcacatgtac tccgcagccg gcggacagca gcagccgccg cagcagcagc agcagcagca 1201 gcagatctac ggcggcctct acggcgggga gatgcaacag cagcagcagc agcagcagca 1261 gggctacgcc agcagctaca tcaacagcta cgagcagttc taccagcagc aacagcagca 1321 gcagcagggc agcgactacg ccttcggggt ggactacgcc aagagtgcgg gagtgcgcta 1381 tcatccctac ctgcagacgc ccacctccct gggaggcctg cctccaggag gaagtgccca 1441 gcagcagcag caggaggagg ctgtgcccag tgccgtgagc accaccaccg cggtggccat 1501 gagtccgcgc gtggtcagca gcagcagtcc cacgtcgacg tcctcgcact tgcagctcgg 1561 tggcagcgcc agtggccaga cgcccggttc cccgggcgga ggaggagcct ccggcagcgg 1621 cggctgcaag ctgcagtgca aaaagtgcgg catcctcacc accaacgagt cggagctgca 1681 ggagcacata gccaatgtgc acggagagtc gccgtacggg agcagcggct acgccagttc 1741 gccgtacatc aaggaggaga tgcccacgcc gcagccaccg gcatctgcta atcccggcga 1801 gctgctcgat ttggactccc aaaagatggt ctaccaccag cagttgctcc agcagcagca 1861 gcagcaacag cagcagcagc acgaggcggt cgccggcctg ccgctgggcg ctctccccga 1921 tccgctgcac tcgatgcagt ccatgcagca gcgggcgctc cacagctggg agcaccagcc 1981 gcaggtggcc tccgtggagg gtttgccgcc ctacatgcag cagggattgg gcgtgggcct 2041 cggcgtagac aagtcgccct actattcgcc caagcagtcg ccctaccacc agtcggccgg 2101 cgttggcgga gccacgctga tcaagcagga gtacggcggc catggactca tcaagtccga 2161 gtatcccgat tcgcagcact atgtggacaa gtcgtttgat cccacagcag gaggaggagg 2221 agcaggagga tcggagttat gcgccagtgt ggccaccagt ccggcggagt ttcccagcac 2281 caccaccggc ggtccggggc aggaaagcgg ggcgggagct gctcccggca acggctaccg 2341 cggcttcgag ccgcccagct ccagttcggt gctgccggcc aacagcctga ccgccaaggc 2401 ggccacctgg aagtcgaacg aggcgcgccg cccgaagacc tacaactgca cggcgtgcaa 2461 caagtggttc accagctcgg gccacctcaa gcggcactac aacacgacgc tgcacaagaa 2521 tgcggtgaag tcgagcggcc agccggatcc ggcgacgctg cccatttcgg cgcaccatca 2581 tcccgcccgc gatccggtga cgaagcccag tcgccggggc actgccgctg ctgccgccgc 2641 cgctgccgca gcagcagctg ccgcttcagc cggtcaacaa cagccgccgg tagcaccgcc 2701 gccgccggcc aatgtgccgc cgccggagcc gcccagaagt ccgcccgatt atggcggcgg 2761 aggaggagga ggaggtcatg tcgctgccat gtcccagtac tcggcctcgc catcgcccac 2821 ccagcagcag cagcagcacc acctcaacca ccaccatcag cagcagcagc aggcgaatgg 2881 ctatgctaat ggcaccgcca atggctacgg ctacatgcag caacaagtgc aatccacgac 2941 aaacgcttca ccacagcacg cttccaacaa ccaacagcag cagcaacagc agcagcacca 3001 ccagcagcag cagcaacaga tgccgcagca gcaccacaac tccgttttga acggtcaccc 3061 aaacgggcta gcaggtccct ccgccccaca caacaacaac aacaccaccc aaatgccgtc 3121 ctcccaaatg aggggcctgc tgaacgaaac aacaaccacg ccgccaccac caacaacaac 3181 ccgagcacca ccaaccacag caacagcaac ggcaacggca acaacggcgg ccaccacggt 3241 agctacaaag agcgagcaag tggaggacag caatcacaac aaccaggaca acaggagcca 3301 cagcaacagc agcagcagct caatggccac ggaggaggcg gaggagcagg aggaagatca 3361 cctgcagcag cagcagcagc agcatcatcc gcagtatctt ctaacatcgc gccactatca 3421 cagcagcaca cccaacagca acagcagcag cagcagcagc aacaccaatc ccaactcacc 3481 ccatactatc taccggcagg agccgctgga aacgcaggat ttctcgcagc ccaccacccc 3541 tccgccgccg cagccgctgc cgcctatggg aatgctgccg cctatggcaa tggactacaa 3601 catgctggct ttggatatgc ccatgcccat gcccatgccc acgctcatgc acagcagtat 3661 gctgcagtgc agcagcacca gcaccacgcc gctagctact accatcacca ccagtatgcc 3721 ggccactatg cagccgccgc agcagcagct ggtgcaccac cactaccacc aggcggtgct 3781 ccaccagcag cagcagctgg agcagcagca ccaggaggag gagcagcagc agcagcggga 3841 gcttctccaa ctggatcagc agcatcatca gcagcagcag caggcgctaa tcctggcgga 3901 cagtttgccc cacagcagca gttcgcccac cagcagctcc ccgccgccgc cgccgcccat 3961 agccatgccc atgccgctca ccaccatcac agcgccgccg cagctgctgc cgctgcagcc 4021 gccgccgccg ccgcacatca ccagcaccat gcccatgccg cccaccatgc acatgcccat 4081 catgccgccg ccgccgcaat gctaccagca gctgcagccg ctggacccca caatgagcta 4141 tcacactatt attggtagta actcagcttc ggagggggga gggggaacag ggagctatgc 4201 cagcgatggc cagatcctgc agctaatgcc cgcctccctg ttcgccccct atgcgcccat 4261 ctcgccgtac tcggtggccg cccagcgatc gccgcaggag ggcgacctgc cgcccgtgca 4321 cacgctcacc accgccctgc acgcccatca gcagggcggc cagcaggagg cgcagacgcc 4381 gacgctgacg gtgctctcca cgccctactc gcccacggtg agcagctcgc gggccactcc 4441 cgctttggag atggacatgg tgatgatgca gcagcagcag caggagagct acgagatgga 4501 gcagtaccac cagctgcagc accaccaact ggagcaactg cagcagcagc agcagcaaat 4561 gatggagcag cagcaacagc agcagcagca aatgatggca gatcaatccc agatgcagct 4621 acaatcccag cagccatcga gcaagaagcg acgtggcgcc gccgccgccg ccactccctc 4681 gacgacgaag cgacggcgga acagcagcgt gggctcaacg tcgccgcatt ccactaccct 4741 gccatcggga cgcatcaagt gtctggagtg cgacaaggag ttcaccaaga actgctacct 4801 cacgcagcac aacaagagct tccactccgg tgagtacccg ttccgctgcc agaagtgcgg 4861 caagcgcttc cagagcgagg aggtctacac gacgcatttg gggcgccacc gcacccagga 4921 caagccgcac aagtgcgagc tgtgccccaa gcagttccac cacaagaccg atctgcgccg 4981 ccacgtggag gccattcaca cggggctgaa gcagcatatg tgcgacattt gcgagaaggg 5041 cttctgtcgc aaggatcatc tgcgcaagca tctcgagacg cacaatcgtc cgcgggtggt 5101 gggcaagaag tcagccgcgg cagcagcggc agcagcagca gcggcggcca atgcctcggc 5161 ggtcccagct gtcggctcca tcaaggcggc ctttgcagct cctgctcttg ctcttgctcc 5221 taccgccaac cagatggtcg tcaatccggg cctaatcccc gccagcagcc tcagtctgaa 5281 gcggcccatt gacgatgtgg ccgccgacga tgacagcctg ctggaggagg acgaggacga 5341 gatggagatg gagatgctgg aggaggagga ggaggaggag gaggagctca gcgatcacca 5401 cctgatgatc aagagcgagt tcgcggagga ggagtttcag atgatcgaga agagcataga 5461 gttgtactga gacgccggaa gaatcgaggt tttgaaatgc tcctgggctt tgagcttcgc 5521 ggagggcaac tgagcgcggc ttgggctgcc caagcagttc gagcggctct gcagttgagt 5581 tttttgggga gttctattag gaaaacacac tttattgcct ggcaagcaat aattcgatgt 5641 ttttgcttat tttttgccgt ttgggtaaac acgaaagtac ttggaattga acgcaaagcc 5701 gcagcatttc aataacttag agtctggatc cccgaaatcc ccgaaaatcc atatccattc 5761 ctgtaacttg tattgagttt gccatgtgaa acgattgaaa aaaagacaga aagacagaag 5821 acagaattcc taattgttgt agcagcaaat tattttattt aattttattt gtacctatgt 5881 taaaactgta ttattattat ttgtaccatt acgatcccta tttgtaaagc cttatttgta 5941 cgtgtaaacc atcaagtata cctcagcaac agcagtccac gaaaacgctt aaaatcaggg 6001 cgcctataca tacattatat tattatatta gatatttata catattccac acaccaccct 6061 atatgtaaac actagtttta gcactctttt ttttgtcgta ctctaatttg tagcttgttt 6121 aattattatt tgattatttg actatttgat tattaattat gttttgtaat cgagagaaag 6181 aaccacaaac gaatgccata tacacgatat gtaaactaaa aatcagcaac tatatgccaa 6241 ttgatatata tatactatat ctagttacta gacaagcgca tatatatacg catatatgtg 6301 ttagccttaa aaacgccaaa ttgtcatagc aaaggaagga agaactcaag aaaatgctaa 6361 atcagggata ttattatgtt tctaagccac aaaacagacg cacacatatt cgcgtattat 6421 tatataccta tatatttatt acgattagtt gcccctaact tatgttccgc caataaaacc 6481 aattgtaatt a