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LOCUS XM_044393022 3248 bp mRNA linear INV 09-DEC-2024 (LOC108068625), transcript variant X1, mRNA. ACCESSION XM_044393022 VERSION XM_044393022.2 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_044393022.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3248 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3248 /gene="LOC108068625" /note="zinc finger protein 391; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108068625" CDS 640..2178 /gene="LOC108068625" /codon_start=1 /product="zinc finger protein 391 isoform X1" /protein_id="XP_044248957.1" /db_xref="GeneID:108068625" /translation="MDTICRLCFQTATLFQVPGYSIPTCVRCSEQLTNNSNFHQSAAA AAAVAASASAAVAASAAAAATSSSTASSSDSDAIAQQHQNPQQQHPNSQQQQQQQQMQ SSSSSENLQSQDDSEDVDLIFNEEGSCPLCNKTFSRKSSLMTHIRNHSAERKFVCTYC HKGFTQAANLRNHERIHTNDRPYQCVDCGKTFTQITNLNNHRRLHTGERPFVCNEPEC GRSFAQVTNLNNHMKSHHKVQQYCCNVCNKKFTQVTSLNQHLQAHAGVTGYYCPRCPE KNFKLQSQLHTHMKTHGLAFPYECDKCDEKFLQQAHLDQHLKMHDEFKFKCDICPSSF NQESLLKKHVQRHVEGRYLSCPVANCAESFAVRQHLSKHLLTNHAHHELPPPKRSKKT GTLQTSQPLAMIGQPLSLQHTTGQRGRPPKNKNKATALAATAIKIEINEPLHSQHISS VSGLSIQQQINQHMQQQAAQQQAQQQQQQQQAQQQQQQQAAQQQLLHLPMGQAVKARF IPTK" misc_feature 1024..1086 /gene="LOC108068625" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1108..1170 /gene="LOC108068625" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1123..1125,1129..1131,1135..1137,1141..1146, 1153..1158,1165..1167,1207..1209,1213..1215,1225..1230, 1237..1242,1249..1251,1297..1299,1303..1305,1309..1311, 1315..1320,1327..1332,1339..1341) /gene="LOC108068625" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 1144..1221 /gene="LOC108068625" /note="Zinc-finger double domain; Region: zf-H2C2_2; pfam13465" /db_xref="CDD:463886" misc_feature 1192..1254 /gene="LOC108068625" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1276..1344 /gene="LOC108068625" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1291..>1428 /gene="LOC108068625" /note="N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins; Region: SUF4-like; cd20908" /db_xref="CDD:411020" misc_feature 1291..1347 /gene="LOC108068625" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:411020" misc_feature order(1297..1299,1315..1317,1336..1338,1342..1344, 1363..1365,1384..1386) /gene="LOC108068625" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:411020" misc_feature 1366..1428 /gene="LOC108068625" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:411020" misc_feature 1366..1428 /gene="LOC108068625" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1381..1383,1387..1389,1393..1395,1399..1404, 1411..1416,1423..1425,1468..1470,1474..1476,1486..1491, 1498..1503,1510..1512,1552..1554,1558..1560,1564..1566, 1570..1575,1582..1587,1594..1596) /gene="LOC108068625" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 1450..1515 /gene="LOC108068625" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1537..1599 /gene="LOC108068625" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1618..1680 /gene="LOC108068625" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1702..1767 /gene="LOC108068625" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" polyA_site 3248 /gene="LOC108068625" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gcacacagcg caacaataac aaaaaaaaaa aaagacgacg gacacaactt cgtcgtgaat 61 tgtaaaatac aaaaaaaaac gcactagttt gttttttttc acgtgtaact acgccaaaaa 121 aaagggcaaa ggaattaagc agcaaaaaaa agaagaaaat cggcgcagca acaacaacaa 181 gagcagagag ccgcatatat gtgcgtgtgt gcaagtgcaa ggcaaacata aacaacgcga 241 gtgtgtgtgt gtacaacgaa aaattaaaat attgtataaa tcaaatttat atataattta 301 ttttttttgt tgttttgcca tcatgtatgc catatagtga tcccttcaat caagaggcaa 361 acacaaaaag aacttgaatt gtaaaaaaac cgcaacactt gcatagtttt tacaaattaa 421 aaaaaaacaa aaaaaaaacg aacaaaataa gaggcaagaa ggcaaaaaaa aaaagaagga 481 gctgaatgct aaccggtaaa gatagcggta aattgcgagg gagaaggaca agaacaacaa 541 caacgactgc ggagggggcg aggagcaaca acaaagtgca tatattcttc cttctccccc 601 acctcctctc catcatcttc ttcccgattt actgctataa tggacaccat ctgtagattg 661 tgcttccaaa cggcaacgtt attccaagtg cccggctata gcatacccac gtgcgtccgc 721 tgctcggagc agttgacaaa taattccaac ttccatcagt cggcggcagc cgctgccgcc 781 gtcgctgcct cggcctctgc cgcagtcgcc gcctccgcag cagccgcggc cacctcctca 841 tcgacggcct cctccagcga cagcgacgcc atcgcgcagc agcaccagaa cccgcagcag 901 cagcatccaa actcgcaaca gcagcagcag caacagcaaa tgcaatcatc cagttcttcc 961 gagaacctac agtcgcagga cgactccgaa gacgtggatc tgatattcaa cgaggagggc 1021 tcctgcccac tatgcaacaa aactttctcg cgcaaatcct cgctcatgac gcacatacga 1081 aatcactcgg cggagcgtaa gtttgtgtgc acctactgcc acaaaggctt cacgcaggcg 1141 gccaacttgc ggaaccacga acgcatccac acgaacgatc ggccatatca gtgcgtggac 1201 tgcggaaaga ccttcacgca aatcaccaat ctgaacaatc accgcaggct ccacactgga 1261 gaacggccct tcgtctgcaa tgagcccgag tgcggtcgca gtttcgccca ggtgacgaac 1321 ctgaacaacc acatgaagtc gcaccacaag gtgcagcagt actgctgcaa cgtgtgcaac 1381 aagaagttca cgcaggtgac ctcgctgaac cagcacctgc aggcgcacgc cggggtcacc 1441 ggctactact gtccgcggtg tccggagaag aacttcaagc tgcagtcgca gctgcacacg 1501 cacatgaaga cccacggcct ggcctttccg tacgagtgcg acaagtgcga cgagaagttc 1561 ctgcagcagg cacacctcga ccagcacctc aagatgcacg acgagttcaa gttcaagtgc 1621 gacatctgcc cgagcagctt taaccaggag tcgctgctga agaagcacgt gcagcggcac 1681 gtcgagggcc gctacctctc ctgtccggtg gccaactgcg ccgagtcctt tgcggtgcgc 1741 cagcacctgt ccaagcacct gctcaccaac catgcccacc acgagttgcc gccgccgaag 1801 cgctccaaga agacgggcac tctgcagacg tcgcagccgc tggcgatgat cggccagccg 1861 ttgtccctgc aacacacgac ggggcagcgt gggcgtccgc cgaagaacaa gaacaaggcg 1921 acagcgctgg ccgccacggc catcaagatc gagatcaacg aaccgctcca cagccagcat 1981 atcagcagtg tcagtggcct gtccatccag cagcagatca accagcacat gcagcagcag 2041 gcggcccagc agcaggcgca acagcagcag cagcagcaac aggcgcaaca gcaacagcag 2101 cagcaggcgg cgcaacagca actgctgcac ctgccgatgg gacaggcggt caaggcgcgc 2161 ttcataccca ctaagtaggt tagttaagga tggaaaggtc tctcttagct taagccccca 2221 acgatcagct gctaaagtcc cctgattagc atagccatag ccaaaaagta gcatcacatc 2281 caagaaacaa acacacactc gcacacacaa aataccatga aatatgatat tgcggatgct 2341 tctgaaatgc ctagagatct ctgaaatgga aaattgtaaa ttagttttat tttacttgcg 2401 aatttctagg ttgtgttgtt tttccaactg tttgtaaaga tgaaatttca tatgtaccga 2461 aggtttttca aggccaacaa ttatttttcc ccattaaaag tgtttataaa tgcaagtcat 2521 tcaaaaagaa aaaaaagtat gattttgaat aggttgtttt aattttttat tgactttttc 2581 agtacagttt tttcagtttc ccttttacaa acactttgaa aaataacatg acttgaaaat 2641 ttgaaacgca atattacttt tgtattgaat tattcaaacg acacagcaaa atcagttttg 2701 agatcagcgt ggagatttct gaagcatccc gaatttagag tcggcggcaa gctgctggtt 2761 cagtttggtg tctgtctcca ttttccggtt ctaaatttac cagccaaagc aatagacaaa 2821 ccaaatgccc ccggaataaa ttgaaagtaa accaaaccgc tatgtataac atctagaaag 2881 aaaaacgcag caccagatgg acagacaaaa acacaaacgg acttaaaatt atgcacataa 2941 acacacacat ctttatatac atatatatta tatatacatg agatcaggtt gagaaatctg 3001 caacttaaat cgaattaaaa ttttaatgta atgcaaaggc acagcgaaac agaaaataaa 3061 atgttgaaaa aaatccgaaa gcaaatacaa attaactacg attaaaatta cgcatagaga 3121 aaggcaacaa aaataattcg attaaatttg gtatgtattt atgttaggca ttagcttaag 3181 tgtttttatt tttttttaat aaatcattac aaaaaaaaag gaacctaaag aagggaagca 3241 agttataa