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LOCUS XM_044393018 8276 bp mRNA linear INV 09-DEC-2024 variant X2, mRNA. ACCESSION XM_044393018 VERSION XM_044393018.2 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_044393018.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8276 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..8276 /gene="mei-P26" /note="meiotic P26; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108056785" CDS 960..4574 /gene="mei-P26" /codon_start=1 /product="B-box type zinc finger protein ncl-1 isoform X2" /protein_id="XP_044248953.1" /db_xref="GeneID:108056785" /translation="MTTLEEPVLAVDTVDPCPPGPPSLKTVLSDDASNSSVLEEIDVS NTSSSSSSSSSSSSSSSGSCSGLGSGSGTDTDTGKGSSTVGSLDVTSSSSIGSAASIS STGSTAIAGPSGLLDDSNSSGLGIGMGIGMGMDMGMGMGMGLVVDVDSAGSSQELSSH GVTELDSLEDSCNGLMIKDGDKLCKLCSSRLVMPRILSCLHVFCEDCLQAVVSKDSMA ASSPNSCSSSSFDGSENQHRTLPALLLECPVCKQETPLGPKGVKGLTCDYIVTNILDL SNLESEHIVCTSCKSKEEAISRCNDCANFLCNGCDNAHKYMRCFENHHVVRIEDLTKN VHDKLIIHKPVCCRQHVSENLKYYCFTCQVPACNDCLLSDHKGSDHHYETATVAEQAV RADLEQTLSEALKKADYCNDAGGNLGSALTELQSQHDTVRQQIEDAYKSYKRMLESIK EQMLNELGRLHSDRELKIMDLMQSMENNMGKLQQAAQFGQRAIDKANAVEFLLLKPVI NAQCLNLMEQTPKCDVNYQLQFDSKPEKFEQFAREMFGKFQTDQSDSSPKKQAMAQQQ QQQQQQQQQQQQQQQQQQQQHRQVQQQQQQQVQHQQLQLQQQQHSSNNLIVGHRGSSS VQGRLSSAVFSPISLPSSLQSSFDGDTNSVITNFSMMDSPPQTSSQQQLPTAQQQQQQ QQSQQQQQAVVLQQQKHQQHQQQQQQQQQVLHQQPSAQSMPPQMGQLVAPQGQLVQQA VNHVNLNSGPGPNISINGLGAGGPPPSFSMLEYNISRLASLTEPMPDSLNDALAVGGG AAGPVPNVAQVPGGSAVAGGGGAVVGAPHSHQQQQQQQQQQQAVMPASAVTPTQPITL ADILSGDQRALNNLQALAKLGLNNNDFCMPPATSPSLQSLNPIVGGVEDMGLNNFHAV AAPGTTSVVTGRNKATPMQIRCKFGSLGTAKGQFNSPHGFCLGVDEEIIVADTNNHRI EVFDKMGALKFQFGVAGKEEGQLWYPRKVAVMHNNGKFVVCDRGNERSRMQIFSKCGH FMRKIAIRYIDIVAGLAVTAKGHIVAVDSVSPTVFVISEEGELVRWFDCSDYMREPSD IAIRDNDFYVCDFKGHCVAVFQDDGTFLYRIGNEKVTCFPNGIDISNAGDVLIGDSHG NRFHVACYSREGALQSEFECPHVKVSRCCGLKITSEGYVVTLAKNNHHVLVLNTLYVH " misc_feature 1500..1727 /gene="mei-P26" /note="RING finger (Really Interesting New Gene) domain and U-box domain superfamily; Region: RING_Ubox; cl17238" /db_xref="CDD:473075" misc_feature order(1509..1511,1518..1520,1554..1556,1560..1562, 1569..1571,1578..1580,1698..1700,1707..1709) /gene="mei-P26" /note="cross-brace motif; other site" /db_xref="CDD:438111" misc_feature 1812..1937 /gene="mei-P26" /note="B-box-type zinc finger superfamily; Region: Bbox_SF; cl00034" /db_xref="CDD:469587" misc_feature 1983..2114 /gene="mei-P26" /note="B-box-type 2 zinc finger found in Drosophila melanogaster brain tumor protein (BRAT) and similar proteins; Region: Bbox2_BRAT-like; cd19798" /db_xref="CDD:380856" misc_feature 2136..2498 /gene="mei-P26" /note="coiled-coil (CC) domain of Drosophila brain tumor (brat) and similar proteins; Region: CC_brat-like; cd20482" /db_xref="CDD:467844" misc_feature order(2145..2147,2154..2159,2163..2171,2178..2180, 2187..2189,2229..2234,2241..2243,2250..2255,2262..2267, 2274..2276,2295..2300,2307..2309,2316..2321,2328..2333, 2340..2342,2370..2375,2382..2384,2394..2396,2403..2408, 2415..2420,2424..2429,2451..2453,2460..2465,2472..2474, 2481..2486) /gene="mei-P26" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:467844" misc_feature 3741..4562 /gene="mei-P26" /note="NHL repeat domain of the Drosophila brain-tumor protein (brat) and similar proteins; Region: NHL_brat_like; cd14959" /db_xref="CDD:271329" misc_feature order(3783..3803,3867..3869,3924..3935,3948..3950, 4002..4004) /gene="mei-P26" /note="putative Pumilio binding site [polypeptide binding]; other site" /db_xref="CDD:271329" misc_feature 3810..3920 /gene="mei-P26" /note="NHL repeat [structural motif]; Region: NHL repeat" /db_xref="CDD:271329" misc_feature 3951..4079 /gene="mei-P26" /note="NHL repeat [structural motif]; Region: NHL repeat" /db_xref="CDD:271329" misc_feature 4086..4196 /gene="mei-P26" /note="NHL repeat [structural motif]; Region: NHL repeat" /db_xref="CDD:271329" misc_feature 4206..4325 /gene="mei-P26" /note="NHL repeat [structural motif]; Region: NHL repeat" /db_xref="CDD:271329" misc_feature 4338..4457 /gene="mei-P26" /note="NHL repeat [structural motif]; Region: NHL repeat" /db_xref="CDD:271329" misc_feature 4473..4553 /gene="mei-P26" /note="NHL repeat [structural motif]; Region: NHL repeat" /db_xref="CDD:271329" polyA_site 8276 /gene="mei-P26" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 agtttgtcag ttacgttcaa acagtttttg ttcgttctgc gttccagaat tagttgtatt 61 tttttgttta tttacttttt ccccgtttct ttttgtgttc tttttgcctt cttacggttt 121 cgttcttttg tgcaaaattg tgtaattttc taataaccaa ggatcaacga tttctacttt 181 cttttgcaaa tcccaaagga acggcgctgt cgtccaattt acgtcgccgt cttcttcgtc 241 agtgtttgtt gtcgtcgcct cgttcgtcct taatattatt tcgtcctcgt acaacaagaa 301 caagaagaag aagaagaaca accacaacca ggatcaccgc aatacgcagt ttcccaatgc 361 tttaaaacga ttcggcaacc tctaaggaac aaaaagaata tatacatcaa atatatatta 421 tatatataaa aaagacaagc agcgaatcaa gaaccgaaaa caccaaataa acaaagatat 481 aaagataaag atataaaccc aaagtcaaag gaggctcgca aaatttttta caaatttgca 541 atacatttta catgagaaga aaagagaagg gaagaggagg agaaattgca ataggtgtgt 601 gtttgtgtga gttcgtcgtc gtctcaggat aattttttcc cccggagagg cgaactgttg 661 ttgcaattgg aattcgcggc gagaggagag atctctattg gaatggctct cttgggagag 721 cggcaggaca ttagggagca tcagcagcag caggatcagc agtaaatagg agccagctca 781 aaggaatcaa caggggagga tcaggaatta ggaagcagga taaaggaagc gggataaaga 841 agcgggataa aggaaacagg atataggaaa ccggaaacat agcccaggca aaaacaggaa 901 tcatttaaat caggaagaca aggacctaag aaaccaggaa agcgccaaaa gaaaggacca 961 tgactacttt ggaggagcct gtcctggcgg tggacacggt ggatccgtgt cccccggggc 1021 ctcccagcct gaagaccgtt ctcagcgacg atgcctcgaa ctcatcggtg ctggaggaga 1081 tcgacgtgag caatacgagc agcagcagca gctccagctc cagcagctcc agttcgagct 1141 ctggatcctg ctcgggcttg ggatcgggat cgggcacgga tacggacacc ggcaagggca 1201 gcagcactgt cggcagcctc gatgtgacca gctcctcgag catcggatcg gcggcatcca 1261 tctcatcgac gggctccacc gccatcgccg gaccctcggg cttgctagac gattccaact 1321 catcgggact gggaatcggt atgggaatcg gtatgggtat ggacatgggc atgggcatgg 1381 gcatgggact ggtggtggat gtggacagtg ccgggagcag ccaggagctg agcagccacg 1441 gcgtcaccga gctggactcg ctggaggact cgtgcaacgg cctaatgatc aaggatgggg 1501 ataagctatg caagctgtgc agctcgcgcc tcgtgatgcc gcgcatcctg tcctgcctgc 1561 acgtcttctg cgaggactgc ctgcaggctg tcgtatcgaa ggactcgatg gcggccagct 1621 cgccgaacag ctgctcgtcg tcctcgttcg acggcagcga gaatcagcac cgcactctgc 1681 ccgcactgct gctcgagtgc cccgtttgca agcaggagac tcccttgggg cccaaggggg 1741 tcaagggtct gacctgcgac tatattgtga ccaacatact ggatctctcc aatctggagt 1801 cggagcacat tgtgtgcacg tcgtgcaaga gcaaagagga ggccatttcg cgttgcaacg 1861 attgcgccaa cttcctgtgc aacggatgcg acaatgccca caagtatatg cgctgcttcg 1921 agaaccacca tgtggtgcgg atcgaggatc tgacgaaaaa cgtccacgac aagctgatca 1981 tccacaagcc cgtgtgctgc cgccagcatg tgagcgagaa tctcaagtac tactgcttca 2041 cctgccaggt gcccgcctgc aacgattgcc tgctgagcga tcacaagggc agcgatcatc 2101 actacgagac ggccacggtg gccgagcagg cggttcgcgc cgatctcgag cagacgttga 2161 gcgaggccct caagaaggcc gactactgca acgatgcggg cggcaatttg ggcagcgccc 2221 tcacggagct tcaatcgcag cacgatacgg tgcgccagca aatcgaagat gcctacaaga 2281 gctacaagcg catgctcgaa tcgatcaagg agcagatgct caacgagctg gggcgcctgc 2341 actcggatcg cgagctcaag atcatggatc tgatgcagag catggagaat aatatgggca 2401 agctgcagca ggcggcgcaa ttcggccagc gtgccatcga caaggccaat gccgtcgagt 2461 tcctgctgct caagccggtg atcaatgccc agtgcttgaa tctcatggag cagacgccca 2521 agtgcgatgt caactatcag ctgcagtttg actcgaagcc ggagaagttt gagcaattcg 2581 ccagggagat gtttggcaag ttccaaacgg atcagagtga ctctagtccc aagaagcaag 2641 cgatggccca gcagcagcaa cagcagcagc aacagcagca gcagcagcaa cagcagcagc 2701 agcaacagca gcagcagcat cgtcaagtgc agcagcagca gcagcaacag gtgcagcacc 2761 aacaattgca gttgcagcaa cagcaacaca gctctaacaa tctgattgtg ggccatcggg 2821 gcagctcctc tgtccaagga cgcctgagct cggctgtatt cagccccatc tcgctgccct 2881 cctcgctgca gagttccttc gatggcgaca ccaactcggt gataaccaac ttctccatga 2941 tggactcgcc gccgcagaca tcttcgcagc agcaattgcc aactgcccag cagcagcagc 3001 agcaacagca gtcgcaacag cagcaacagg cggtcgtgct gcagcaacag aagcaccagc 3061 aacaccaaca acagcagcag cagcagcaac aggtgctgca ccagcagcca tcagcacaat 3121 ccatgccccc gcagatggga cagctcgttg ctccgcaggg acagctcgtc cagcaggctg 3181 tcaatcatgt caatctcaac tctggccccg gtccgaatat atccataaac ggtttgggcg 3241 ccggcggacc gccgcccagt ttcagcatgc tggagtacaa tatctcgcga cttgccagcc 3301 tgacggaacc catgccggac agcctcaacg atgctttggc cgtgggggga ggtgccgctg 3361 gacctgtgcc gaatgtggcc caagtgccgg gtggctcggc cgtcgccggc ggaggaggag 3421 ctgttgtggg agccccgcac tcgcatcagc agcagcagca gcaacagcag cagcagcagg 3481 ccgtaatgcc ggcatcggcg gtaacgccca cgcagccaat caccctggcg gacatccttt 3541 cgggcgacca gcgggcgctc aacaatctac aggcgctggc caagctggga ctcaacaaca 3601 atgatttctg catgccaccg gccacatcgc ccagcctgca gtccctcaat ccgatcgtgg 3661 gtggcgtgga ggacatggga ctaaataact tccatgccgt cgccgctccc ggcaccacca 3721 gcgtggtcac tggccgcaac aaggccactc cgatgcagat ccgctgcaag tttggttctt 3781 tgggcacggc caagggtcag ttcaattcac cccacggttt ttgcctgggc gtcgacgagg 3841 agatcatcgt ggcggacacg aacaaccatc gcatcgaggt cttcgacaaa atgggcgccc 3901 tcaagttcca gttcggagtg gcgggcaagg aggagggcca gctctggtat ccgcgcaagg 3961 tggccgtcat gcataataat ggcaaattcg tggtctgcga tcgcggaaac gagcgctccc 4021 gtatgcagat attctccaag tgcggtcact tcatgcgcaa gattgccatc agatacattg 4081 acatcgtagc gggcttggct gttacggcta agggtcatat cgtggccgtg gatagcgtgt 4141 cgcccacagt gtttgtgatc tccgaggagg gcgaattggt ccgctggttc gactgcagcg 4201 actacatgcg cgagccctcc gacatcgcta tacgagacaa cgatttttac gtgtgcgatt 4261 tcaagggcca ttgtgtggcc gttttccagg acgacggcac attcctctat cgcattggca 4321 acgagaaggt cacctgcttc cccaatggca ttgatatatc gaatgccggg gacgtgctca 4381 tcggcgactc gcacggcaac cgcttccacg tcgcctgcta ctcacgtgag ggcgccctcc 4441 agtccgagtt cgagtgtccc cacgtcaagg tttcccgctg ctgcggcctg aaaatcacat 4501 ccgagggcta tgtggtgacg ctggccaaga acaatcatca tgttctagtc ctgaacaccc 4561 tctatgttca ctgattgcaa atcaaagcgc gcaacaatcg tccatcagtc gatatgaaca 4621 aatacaacta caaatactcg tcgggcaaga tatacggatg ccgacgtcag cagcaagcaa 4681 ccaacatcgg caacagcaac agcaacagta atagcaacat caacctattg gcaaggactc 4741 agcctcaact atgcaacagc aacatgagca acatgagcaa cattagcctc atttgcaacg 4801 gcagcaacat caatcaacag ccgtcgtcga cgacaacacc atcagtcatt taatagaaga 4861 gttaagcaag aattagcagt gtgttgctaa gcaagaaaag caagcaaaac aagctgaagc 4921 aacaacatta tgaacagcaa ttgcaataat ccagacatat atataggaca aagtatatat 4981 atgtggaaaa agggggaaag caaaatctcg aaacaccaaa aatcctttta aatcacaaca 5041 agaaacgttg ccgtttcatg agccacagca actgtataaa acaaaaaacg aaaaacaaaa 5101 aaccaataac aaaatgataa acaaaatgca acaaatacta tttttgatct ctaatttaaa 5161 aacaattagc gctactacta aaaaacaaac atcaacaaat ctaacaaaaa gaaaaacaaa 5221 aatattttac ctagtataac gagtaacaaa caacaagcaa gaagaaaaaa caacaaacaa 5281 agcaaacaaa gaaaaccaaa acaaaaacta aaacttggga tattttaaaa atgtttttta 5341 aaaactcttt ttaaattgtt ttttaattat gcttttttca ttgaatttat gttcttgtta 5401 aaaattgtca taaaaacaca cactcacaca tacacgtaca cacgccacac tcacacaaac 5461 tctactactt tacatgttac ttattatcta tatagacata tatattgtta tatcgaccga 5521 ttagcttttt tgtgcatacc cttccagaat ctttttctaa aaaacaaaaa aaaaacgaaa 5581 cacgcatata tatatctaca cctagtatac aacatctatg tatatctagc aaaatgtgca 5641 acttttgtgc acaggttttt tgctaacaat tatggaagta aataatttgt tgagggcgtc 5701 atcagaggtc gcgtacaggc aataattata gaagaagatg aaatctaagt agtttatttt 5761 gatttcaaac tgaaaccaaa cactaagata aaagttcaga aaataaaaaa ctgtttaggt 5821 ttttccttac gctgcttata taaggtgata tctatttata tataaatcta tatgaatata 5881 taaaaaaaac aaaacaaaac aaaaactata tatatcttaa acatatatgt gaaatcctat 5941 gactatatga ctttgccata taatatacaa agcaggacga gagagtaggg agttaggcat 6001 agggatagcg agggacggag gacgaaggac gaagggacga aaggacgaaa ggaggcaaca 6061 cacactacac cacacggcca cacggcagat atgtgtccgc gaatatccag agacgaccga 6121 cccagagaat acattcgata tgtatcaact aattgcgttc ttcacgccag aaatccaaca 6181 agaactacag acaacaaact caacatacaa attaatctgt aagctaacaa accaaacaaa 6241 acgaatgcaa atcgcattag gccaacaact atataactaa aacagcagag acaacaacaa 6301 aaagcgttaa aaaacctaca aacgtatctg ttaagttctt atatacattg ttaaaaaaaa 6361 aaccaacaaa caaacaaaaa acaaatattc cttttgctta tatacaaaac aaatgcaata 6421 cacgtgcatg taatcgacat acacacacca caaacacaac acccacacca ctcacgattt 6481 atatagacga tatagacaac catttaagat gatatatgta cggatacgtg caacatttct 6541 ttcccgttgt aatacaatat aaggctggtt tactcccaag acattattat ttatctatat 6601 acaaaataac attttttaat tgtgtgaatt ttatcatgtg agaatcgaga agcgagaaac 6661 gataggtaga acaacatgta acgttttatt tagatgaagt tgggcgagaa agcaaagcga 6721 agcaagcaac ttatttttta taggctgtaa ccacatttat tatacatcca catcatacgt 6781 ttacatttac atttaaacac ctaactcact tacacaacac acaacataca acgaaacgaa 6841 tcctttgcat tgtgaacaat atcctgttcg ttttgttcaa aactattcga ttccttttca 6901 atgtttcaaa cagcagaaaa aattatgtta aaacccatct ttggcatttg tgtctcacaa 6961 tgcggagata agtgaagaaa actgttttaa atcttgtcat ttttttagtt attaattttt 7021 aatttttaat tttagtctta gcatatacac aacacaaaac aaaactatta aaatcgcgat 7081 tatgtttacg ttaaatgtta agttgttcta tttaagcaaa tggacgatta cgaatagaga 7141 aaccatttgc ttaacaatca tttactactg tcatattgtg taactataat tatttttgtt 7201 tagtttttac gttgttacgt gtgaggctac acagttctgt atacataatt ataatttagc 7261 ttaagtgtaa tctataaacc actacatcaa ccaatgtgaa acgcttctga ttatgttata 7321 ccactgaaat tataaacatt taactataaa cattatgatt atgatgatag tatgtacccc 7381 aaagttgttg atggtagacg agaaggtctt agaaagggaa gaacgattat gagcgatgag 7441 cgaaagagag agcgagagag agggtaaaaa atgcaatttt ttgtgaaaca atttggctgt 7501 tgaaatatat aatttttaat ttaattatgt ttttgcattt cgtttactat aacttaggcc 7561 ccaagcaaat gttatattat tgaattgaat ttatcgcgat ttccttagac ctttcctttt 7621 acattttcgc atacacattt tttttttgat tttgtcgctg cattaactac ggaagtatta 7681 agaggaaaca ttttgctaaa gacaatggaa acactcaaat gcaaagtata ccaaaagatt 7741 tgattttaat ttcttctcct aattgtgttt gtatttttta cattttacat tttactttta 7801 actcttaact ttttacttca ctgtgcgagc tactttatta tttttatttt tcttaataac 7861 ttcatgtttc cttatacttt gtcctcgtct tagtcaacag agtgtctgta aaacaaaaat 7921 ataaaatcaa actcgaaaac tgttatagaa aaaacaacaa aaattaccat tttaaatttg 7981 tttatagttt ttatggaaag ccttcaaatg aaattgtaat tccacacgct tttattttat 8041 aaactaaaac cgaaacataa agaggtaaac atttattatc ttaattttgt gtttaatttt 8101 tatttctctc tctttgttga accaaaaaat ggcaaaaagt caattgttgc tttaaagaaa 8161 attgcaaatt tttaattaaa tttaagttta ctatgaaaat gatattaagt gaaaccgtat 8221 atgattttta tgcgatgcga tgcgtttaag tagaaaaaaa aaacaaaaac aacaac