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LOCUS XM_044392778 6787 bp mRNA linear INV 09-DEC-2024 transcript variant X4, mRNA. ACCESSION XM_044392778 VERSION XM_044392778.2 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_044392778.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6787 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6787 /gene="rdgA" /note="retinal degeneration A; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108056060" CDS 1054..5436 /gene="rdgA" /codon_start=1 /product="eye-specific diacylglycerol kinase isoform X4" /protein_id="XP_044248713.1" /db_xref="GeneID:108056060" /translation="MQQQQQQPSIDQLSEPIASTSSAAAIRQAAAAAAATSTPTTSST SNNFHQQLQATTAATMQRLRTTFTRSRTPTGAEMKMQNSLEVPKQVRSASFDEMQLES QRASSSLLKQQSSSSASADERSSEAGFLQVPLAAHQQRSHSFDSAATASGGSDDSGTF LEVPRRLKARRTSSTKTPPPCIHCHYLEEYERLMTADQRYFIDHRELTALSYSNTSSE NSEDEDDGEDDDEASSTAIEDAEEETTEAATEEADEDPRTEVESEHDHDPDDDAAMEM DIRIGNMSSQGSSIEESRARLPRQMRRHTIGSSSLASATSEDEGLEGSDNGSPHFGNT LQPPATPCGITFTLSPTNGDYPSPPHLPLDPGSPPMSPCSSNSISGRLPADADDAGAA MGLPVRARRRSISRQEAIFVEPTGNSLENVSHEEVDNHSSNNNTKSSVDTADSLEEAS TMATCGSPGAVGGLGPSTSSGAVGGHHNAFVVRDIYLMVPDLKRDRAASVDSCFSKLS SGAKTEELQPSADGCFLTVPNINATRSRSVDIVLPTDEQARYKALSMTGSTVTYADGR TASASNSRRPIRIVPDWTENAVQGEHYWKPTSASGDLCCLNEECIKSGQRMKCSACQL VAHHNCIPFVNEKSTLACKPTYRDVGIRQYREQTTTHHHWVHRKLEKGKCKQCGKFFP MKQAVQSKLFGSKEIVALACAWCHEIYHNKEACFNQSKIGEECRLGNYAPIIVPPSWI VKLPSKGNFKSSIRVSNKNNAASGSGGGASGSGGGGGGGGGKSKKQTQRRQKGKEEKK EPRAFIVKPIPSPEVIPVIVFINPKSGGNQGHKLLGKFQHLLNPRQVFDLTQGGPKMG LDMFRKAPNLRVLACGGDGTVGWVLSVLDQIQPPLQPVPAVGVLPLGTGNDLARALGW GGGYTDEPIGKILREIGMSQCVLMDRWRVKVTPNDDVTDDHVDRSKANVPLNVINNYF SFGVDAHIALEFHEAREAHPERFNSRLRNKMYYGQMGGKDLILRQYRNLSQWVTLECD GQDFTGKLRDAGCHAVLFLNIPSYGGGTHPWNDSFGASKPSIDDGLMEVVGLTTYQLP MLQAGMHGTCICQCRKARIITKRTIPMQVDGEACRVKPSVIEIELLNKALMLSKRKHG RGDVQVNPLEKMQLNILRVTMQQYEQYHYDKEMLRKLANKLGQIEIESQCDLEHVRNM LNTKFEESISYPKVSQDWCFIDSCTAEHYFRIDRAQEHLHYICDIAIDELYILDHEAA TMPQTPDQERSFAAFSQRQAQTERRQLDQAQGRGPGSTDEDLQIGSKPIKVMKWKSPI LEQTSDAILLAAQSGDLNMLRALHEQGYSLQSVNKNGQTALHFACKYNHRDIVKYIIA SATRRLINMADKELGQTALHIAAEQNRRDICVMLVAAGAHLDTMDSGGNTPMMVAFNK NANEIATYLESKQGTQPVDGWLDD" misc_feature 2812..2997 /gene="rdgA" /note="first protein kinase C conserved region 1 (C1 domain) found in type IV diacylglycerol kinases; Region: C1_DGK_typeIV_rpt1; cd20802" /db_xref="CDD:410352" misc_feature 3037..3237 /gene="rdgA" /note="second protein kinase C conserved region 1 (C1 domain) found in type IV diacylglycerol kinases; Region: C1_DGK_typeIV_rpt2; cd20855" /db_xref="CDD:410405" misc_feature 3502..3873 /gene="rdgA" /note="Diacylglycerol kinase catalytic domain (presumed); Region: DAGKc; smart00046" /db_xref="CDD:214487" misc_feature 3952..4416 /gene="rdgA" /note="Diacylglycerol kinase accessory domain (presumed); Region: DAGKa; smart00045" /db_xref="CDD:214486" misc_feature <5032..5403 /gene="rdgA" /note="Ankyrin repeat [Signal transduction mechanisms]; Region: ANKYR; COG0666" /db_xref="CDD:440430" misc_feature 5032..5115 /gene="rdgA" /note="ANK repeat [structural motif]; Region: ANK repeat" /db_xref="CDD:293786" misc_feature order(5038..5043,5050..5058,5062..5067,5077..5079, 5086..5088,5113..5115,5119..5121,5125..5127,5137..5142, 5149..5157,5161..5166,5176..5178,5218..5220,5224..5226, 5233..5235,5245..5250,5257..5265,5269..5274,5284..5286, 5293..5295,5320..5322) /gene="rdgA" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:293786" misc_feature 5119..5220 /gene="rdgA" /note="ANK repeat [structural motif]; Region: ANK repeat" /db_xref="CDD:293786" misc_feature 5224..5322 /gene="rdgA" /note="ANK repeat [structural motif]; Region: ANK repeat" /db_xref="CDD:293786" polyA_site 6787 /gene="rdgA" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ttcatttgaa cggtcgacga ggcgtgttgt gctagaaaaa atacctcata taaatagcag 61 aacagccccc aaacaggcca aacatttcaa acaaaaatac aatacaaaac tctctggaac 121 tcaagttctt caactcaaca tcgcccaaaa caaaaacatc tcataccaaa gaaaattaaa 181 aacaaaaact cacaatataa atatatagat taactctttt tttgattgtg cttctaagtg 241 ttgtgctaaa actatattaa cttgtataaa tattcaaaga tattcaaaag tatttaactt 301 atattttcaa aatatccacc taaatgctaa gaaaacaaac tcataactaa cggaaagtta 361 aaaggacaaa aaacataaca gacagtttta agaccaagta catttcgaat ttgtcgtgct 421 ttttgaatcc taactgttga cgcgtaaaac gcacaaaaat gtgcacgaaa ttctcactag 481 actcgaacga ctgaaaagtg cgttccattg aaaataaaaa caaaaactga atgcgaaccg 541 cgcgaaactt ttgattaatt aaaagtaaaa caaaaagccg agagccaacc aagaactggc 601 ttctggcgaa caacaacaaa aacccacaac gagagtcctg aaactcgccc acaagtaact 661 tctcctccag gaagcagcta aacaaaccac aaaaaaaaag gacaacaaaa aaagaataca 721 gaattgagaa aaaattcaac tttgaccgaa caccgaacat cgaaatggaa ttggccatca 781 gaattgtcaa ttcgcagttc gctcgctaca aaaacaacta caacagcaat aacagcaaaa 841 ttcacaccag caatagcaaa gatcgaatca tcgacaacaa cgacgagaac aacaatccca 901 acaatctcaa cagtgacaac aatttaacaa cgataagagc agcagtagag aaaactgcaa 961 ccaccaccgg caacaaccaa tcgacatcag cagcagcaac aacagtagct gcaacttgcg 1021 acaaatttgt attgacaaca acaaccaagc gaaatgcagc agcagcagca acagccgtcc 1081 atcgaccagc tgagcgagcc catagcttcg accagcagcg cggcagcaat taggcaggca 1141 gcagcagcag cagcagcaac atcgacaccg acaacatcgt caacaagcaa caacttccac 1201 cagcaactgc aagcaacaac ggcagcaacc atgcaacgtc tgcgtaccac attcacgcga 1261 tcgcgcactc cgaccggtgc cgaaatgaag atgcagaaca gtttggaggt gcccaagcag 1321 gtgcgctcag cctccttcga cgagatgcaa ttggagtcgc agcgcgcctc ctccagcctg 1381 ctcaagcagc agtcctcatc ctcggcctcg gcggacgaac gctcctcgga ggctggcttc 1441 ctgcaggtcc ccttggcggc ccatcagcag cgatcccata gcttcgattc ggcggccacg 1501 gcctcggggg gcagcgatga ttctgggacc tttctggagg ttccgcgccg cctgaaggct 1561 cgccgcactt cgtccaccaa gacaccgccg ccgtgcatcc attgtcacta tctggaggag 1621 tacgagcgcc tgatgacggc cgaccagcgc tactttatcg atcatcgcga gctgacggcc 1681 ctcagctaca gcaacaccag ctcggagaac agcgaggatg aggacgatgg agaggatgac 1741 gacgaggcca gcagcacggc cattgaggat gccgaggagg agaccactga ggcggctacc 1801 gaggaggcgg acgaagatcc ccgcaccgag gtggagtccg agcacgatca cgatccggat 1861 gacgatgccg ccatggagat ggacatacgc attggcaata tgagcagcca gggcagcagc 1921 atcgaggagt cgcgtgcccg cctgccgcgt caaatgagac gccacaccat cggcagcagt 1981 tcccttgcct cggcgacctc cgaggacgag ggtctcgagg gatcggacaa tggatcgccg 2041 cactttggga ataccctgca gccaccggcc acgccgtgcg gcataacctt tacgctgagc 2101 ccgaccaacg gagactatcc atcgccgccg catctcccct tggatcctgg atcgccgccc 2161 atgtcgccgt gctcctcgaa ctcgatttcc ggtcgcttgc ccgcggatgc cgacgatgcc 2221 ggggcggcca tgggtctgcc ggtgcgggcc agacgtcgat cgatctcgcg acaggaggcc 2281 atattcgtgg agcccaccgg gaactcgctg gagaatgtgt cgcacgagga ggtggacaac 2341 cacagcagca acaataacac caagtcatcg gtggataccg cagattccct cgaggaggcc 2401 tcgaccatgg ccacctgtgg atcaccggga gcggttggtg ggttgggccc ttcgacatcc 2461 tcgggcgctg ttggtggtca tcacaatgct tttgtggtgc gggatattta cctaatggtt 2521 cccgatttga agcgagatcg ggccgcctcc gtcgattctt gcttctccaa gctgtcgtcg 2581 ggcgccaaaa cggaggagct gcaaccaagt gccgatggct gcttcctcac cgtgccgaat 2641 atcaatgcca cacgatcgcg atccgtggac atcgtgctgc ccaccgacga gcaggccagg 2701 tacaaggcct tgtccatgac cggatccacc gtcacctacg ccgatgggcg taccgcttcg 2761 gccagcaatt cccggcgacc cattcgcatt gtgcccgact ggacggagaa tgcagtgcag 2821 ggcgagcact actggaagcc cacctcggcc tccggcgatc tttgctgcct gaacgaggag 2881 tgcattaaaa gcggtcagcg gatgaagtgc tccgcctgcc agctggtcgc gcaccacaac 2941 tgcattccgt ttgtgaacga gaagagcacg ctggcctgca agccgaccta ccgggatgtg 3001 ggcatccggc agtaccggga gcagacaacc acccaccacc attgggtgca ccgcaagctg 3061 gagaagggca agtgcaagca gtgcggcaag ttctttccta tgaagcaggc ggtgcaaagc 3121 aagctatttg ggtcgaagga aattgtggcg ttggcctgtg cgtggtgcca tgagatctac 3181 cacaacaagg aggcctgctt taaccagtcc aaaatcggcg aggagtgtcg tctgggcaac 3241 tatgcgccca tcattgtgcc gccttcgtgg attgtgaagc tgccgagcaa gggcaacttc 3301 aagtcctcga tacgcgtgag caacaagaac aatgccgcct cgggatcagg aggcggggcg 3361 agtggctcgg ggggcggagg aggtggcggt gggggaaaga gcaagaagca gacgcagcga 3421 cggcagaagg gcaaggagga aaagaaggag ccgcgggcgt tcattgtgaa gcccattccg 3481 tcgccggagg taatcccggt cattgtgttt attaatccaa agtcgggcgg caatcagggc 3541 cacaagctgc tgggcaagtt ccagcacctg ctcaatccgc gccaggtgtt cgatcttaca 3601 cagggtggtc ccaaaatggg ccttgatatg ttccgcaagg cgcccaattt gagggtcctg 3661 gcgtgcggag gcgacggcac cgtcggctgg gtcctttccg tcctggacca gatccaaccg 3721 ccgctccaac cagttccggc cgtcggtgtc cttcccttgg gcaccggcaa tgatctcgct 3781 cgcgccctcg gatggggagg gggctacacg gacgaaccga ttgggaagat attgcgcgag 3841 atcgggatgt cgcagtgcgt gctaatggac cgctggcggg tgaaggtcac gcccaacgat 3901 gacgtcaccg atgaccatgt cgaccgcagc aaagccaacg ttcccctgaa cgtcatcaac 3961 aactacttct cgttcggcgt ggacgcgcac atcgccctgg aattccacga ggcccgggag 4021 gcccatccgg agcgcttcaa ttcgcggctg cgcaacaaga tgtactacgg ccagatgggc 4081 ggcaaggatc tgatcctgcg ccaatatcgc aacctctcgc agtgggtgac gcttgagtgc 4141 gatggccagg actttaccgg aaaactccgc gacgccggct gccatgccgt gctattcctc 4201 aacattccca gctatggcgg tggcacccac ccgtggaacg actcctttgg cgcctcgaag 4261 ccctcgattg acgacggcct gatggaggtg gtgggtttga ccacctacca gctgcctatg 4321 ctgcaggcgg gcatgcacgg cacctgcatt tgccagtgcc gaaaggcccg gatcatcacc 4381 aagcggacca ttccgatgca ggtggacggg gaggcctgcc gcgtaaagcc ctcggtgatc 4441 gagatcgagc tgctgaacaa ggcgctgatg ctgtccaaaa ggaagcacgg ccgcggcgat 4501 gtccaggtaa atcccctgga gaaaatgcag ctgaacatct tgcgcgtcac catgcaacag 4561 tacgagcagt accactatga caaggagatg ctacgcaaat tggccaacaa actgggccaa 4621 atcgaaatcg aatctcagtg cgatttggag catgtgcgca atatgctcaa taccaagttc 4681 gaggaatcca tctcgtatcc gaaggtctcc caggattggt gctttatcga ctcctgcacc 4741 gcggagcact acttccgcat cgatcgtgcc caggagcacc tgcactacat ctgcgacatc 4801 gccatcgacg agctgtacat cctggaccac gaggcggcca ccatgccgca gactccggac 4861 caggagcgct ccttcgcggc cttctcgcag cggcaggcgc agacggagcg gcgccaactg 4921 gatcaggccc agggtcgcgg acccggcagc accgatgagg atttgcaaat tggctccaag 4981 cccattaaag tgatgaagtg gaagagccct atactggagc aaacttccga tgccatacta 5041 ctagcagccc agagcggcga tctcaatatg ttacgtgcac tacatgaaca aggatactca 5101 ctacagtcag tgaacaaaaa cggacagacg gcgttgcact tcgcctgcaa atacaaccac 5161 agggacattg tcaaatatat catcgcgagc gccacacgac gcctcatcaa catggccgac 5221 aaggagcttg gacagacggc gctccacatt gccgccgagc agaaccgtcg cgacatctgc 5281 gtgatgctgg tggccgcagg cgcccatctg gacaccatgg actccggcgg aaacacgccc 5341 atgatggtgg ccttcaacaa gaacgccaac gagatagcca cctatttgga aagtaagcag 5401 gggacgcagc ccgtcgatgg ctggctcgac gactaagtag caggtccccc ctccaagtag 5461 agcaatcgct agacaagctt acgccgtggg gctaactcac gacatccaga caacaaacaa 5521 aaacaaacca gacaaagcaa aattaaacca aaaaaagaaa agaaaaaatg attatcacaa 5581 taccagaaca tcagtaaaac agtaatccaa aacaagaatg tacttttaac actgcataaa 5641 tatttctcct ttctatgcca acaaaacaac aaccaacaac caaaatggac aatgtcttgt 5701 aaataactca acttacctaa tcgaatcaaa cgaaatccaa aaaaaaaatg gaactcaaat 5761 caaatcaaca ttccgaaaaa aaacaaaaaa caactcacat tggggttccg tttccgattt 5821 tgcacaggtc aagagcgctt tttgcatctg gaggtgcaga cccgagtcta aaagcaaaag 5881 aggagcattc ggcggaagca ttcaccccac gacaccctac atacatacat agataactaa 5941 taataataat aatgataatc gctttttttt ggcaactttt tttttgtgtt agcatgtacg 6001 agagaaatct aatttaagct aagcaaaaaa aaacacatac acagaagaac actcaaaaca 6061 acatttagcg actaagaatg gacaatggta tggattaact taatttattg taaggaaaag 6121 ttaggcagac gaaaggcaac atttgtccaa aatttaattc aattttcaat tacgaacaaa 6181 aaactaaaaa ctatttttaa aagaaggaaa ttcgaaattt atttgtttct cttaccgatt 6241 gattaacgat taatgattat attgtgatat ctaaattaat taatgtattg gactagagaa 6301 cgaaaacgag aaagagaacg agagcaaata gaaattgata ttagcgaggc aaaaaagttg 6361 aaagaacaaa aaaaaacaac aaaaaacaca ctgatccaca ctaagcaaaa atatatagcc 6421 tatatattta attaattata tatttaatta taccatatat tgtacttctt ttggaattca 6481 aactaggcta agtgagaact tgaatactct tcttcggcag agcagcagca cgattagaag 6541 agagacgcac tagaccctaa gcggctatgg ctctctcgct cagccacaga cacacacaca 6601 cacaccacac aaacacacac acacagtccc gatgcacaga ctaggatgca caacccccac 6661 tagatatacc acccactctt cacccacttc accccagaga aacaactaaa ccctcagcgt 6721 ttcaaaccga aagacttccc tcaaaaacga ggtcacctgc cccaaaaaaa aagaagaaaa 6781 agaaaaa