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LOCUS XM_044392741 4241 bp mRNA linear INV 09-DEC-2024 variant X2, mRNA. ACCESSION XM_044392741 VERSION XM_044392741.2 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_044392741.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4241 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4241 /gene="fne" /note="found in neurons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins" /db_xref="GeneID:108056446" CDS 2033..3103 /gene="fne" /codon_start=1 /product="ELAV-like protein 1 isoform X1" /protein_id="XP_044248676.1" /db_xref="GeneID:108056446" /translation="MTNAMDIVKNGSANGSVDGSNDESRTNLIVNYLPQTMTQEEMRS LFSSIGELESCKLVRDKVSGNLVLPASLTALNPALQQGQSLGYGFVNYVRAEDAEKAV NTLNGLRLQNKVIKVSYARPSSESIKGANLYVSGLPKNLSQPDLEGMFASFGKIITSR ILCDNISGLSKGVGFIRFDQRNEAERAIQELNGKTPKGYAEPITVKFANNPSNSAKAQ IAPPLTAYLTPQAAAATRRLAGALPSAGRIRYSPLAGDLLANSILPGNAMTGSGWCIF VYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTMTNYDEAVVAIQSL NGYTLGNRVLQVSFKTNKTKTT" misc_feature 2099..3094 /gene="fne" /note="ELAV/HuD family splicing factor; Region: ELAV_HUD_SF; TIGR01661" /db_xref="CDD:273741" polyA_site 4241 /gene="fne" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ctttgagatc acattttgag accttcgata atctggggct aagtttaaga actgaagctc 61 aagttagatc ccaaaaaagg tatagataag catgtgaatg tcgatcaagg aaaaccaatt 121 cagagcgtat taacacaaaa gtctgctggc agcaatcaac ttcaagccaa aattattatt 181 caaaatctca acaaaaaaaa agaaatcgtt aaacgaagaa attgcattca actatcatca 241 caactttcca atgtttcttt ttcgtgttgt tgactgatat aaagataaaa gaccaaaatc 301 gttaaggaaa agcaattctc ccacacaact aagtatatta aaataataat aaacgagtat 361 aaagttatta atttttattc aatcatcaat ttgatttggg taaatgtgcg ctagctagaa 421 tcataaatat atatatagtc ggataacatt tgattacctt cgtcggtgag tgtctagcca 481 atcaatctat agcctatagg aaccatatat accacaaggt tttatactga atttataaaa 541 ttttgggtga gggcgcagtg cgcatcgaaa ggcccatcaa aggcatcaac accaaaactc 601 aatataaact aacaaaaata ccataagcaa gtgttttttt gtcgcaaata aataaattta 661 catatttaca cataaaagaa ggagaagaaa agaagttaaa caaaagtaat attaaaataa 721 agacttgaat ttctcaaaga aataaatatt tatacaagaa caagcgaaga ataagaaaaa 781 ataagaaaaa cggacttcca acgatttcaa aatacgacga aatattttta gagcaaagac 841 cctgcaacaa actatgataa caaaaacaat gcaaatcggt taacaaaata tttgccaaat 901 ctatgtatga atcaaaaaat ctaacaaata aaacggaaac ggaattaacg catacttaat 961 gagaaatcga acgtcgagct acaagaattt atactaaaaa ccaggaataa agcaaagaaa 1021 ttgaggagaa caaagaggga caagcgagtg gaaaatcgag atcaacagag atcagctgta 1081 aagtgatatt ttataaaaac cgaaaatatc agttaaggac aacgacttat aagattgagt 1141 gaaaacgagc gagcaatcga acagccatca tttatcagag aaaagacacg gatcaccggc 1201 aaaaaaggaa gatttttaaa ctgaagagga aaaagctaag aaacgaggca aaagaaaata 1261 ggagaagtaa aggagaagta aaccaaaacc aaacaccacc aaataaaacc aactactata 1321 aatttaaagc aaacataaac gaataatcat attcaagcgg tatatatata tacaagagga 1381 taacggataa cacaactaac tatatatata tacgatatat gaatgtatat ttgaaaacca 1441 aagctaagtt ccagtcaaag agaaaaacca aaaaccaaaa accagcgcaa atttagtaaa 1501 agtataaagt aaaagggaaa aaaccaaatt attgctatct ttttgcattt ttgcaatttt 1561 ataaaaaata acaaagaaaa cgaaaaagaa aaaccaaaaa actacaacta aagatcataa 1621 taaactttaa cattcggaga agcaaaaacg aaaaagaaca agtaaacaca tttagcaaaa 1681 tttactcttt tatctaaacg aaaaaccaaa aaacacaaat caaagtaaac ctaattcaag 1741 cataaataaa attttaaacg ttttagacag agaacgctct aaacttaact taaaaagcaa 1801 atacattttt ttcgcgatcg tagttgatct aaaaaccccc tcaaacccaa agtaaatcca 1861 aataaaatcg gcgggaagag aaacgagcag ttgtgcaaag cgcagaaaat cgccgatcag 1921 agaagaataa tttataagcg aaaaccaacc aaccaagcag tgagattaac tactaaccga 1981 aaggactaaa tcaggactag aggacaggat cagaatcgga atcagaatca ggatgaccaa 2041 cgccatggac atagtgaaga acggcagtgc caatggctcc gtcgatggca gcaatgatga 2101 gtcgcgcacc aatttgatcg tcaactatct gccgcaaacc atgacgcagg aggagatgcg 2161 atcgctcttc tccagcatcg gtgagctcga gagttgcaaa ctggtgcgtg ataaagtctc 2221 aggtaatttg gtcttgccag catcgttgac cgctctcaac ccggcactgc agcaaggtca 2281 gagtctgggc tatggctttg ttaattacgt aagggccgag gatgctgaga aggctgtgaa 2341 caccctgaac ggtctgcgtt tgcagaataa ggttattaaa gtatcatacg cccgtccaag 2401 ctcagaatct attaagggtg ctaatttata tgtatcgggt cttccgaaaa atctatcaca 2461 accagacttg gaggggatgt ttgcttcgtt cggcaaaata attacatctc gtatactctg 2521 tgataatatt tctggtctat cgaagggcgt cggttttatc cgtttcgatc agcgcaacga 2581 agccgagcga gccatccagg agctgaatgg caagaccccg aagggctatg ccgaaccgat 2641 taccgttaag tttgccaata atccgagcaa tagcgccaag gcccagatcg ccccgcccct 2701 caccgcctac ctaactcccc aggcggcagc ggccacccgg cgtttggccg gagctctgcc 2761 ctccgccggt cgcataaggt actcaccgct ggctggcgac ctcttggcca actcgatctt 2821 gcccggaaac gcaatgaccg gctcgggatg gtgtatattc gtctacaatt tggccccgga 2881 gaccgaggag aacgtgctgt ggcagctgtt cggtcccttc ggggccgttc agtcggtgaa 2941 ggtgatccgc gatctgcaga ccagcaagtg caagggcttc ggattcgtca ccatgaccaa 3001 ctacgacgag gccgtggtgg ccatccagtc gctgaacggc tacaccctgg gcaatcgggt 3061 gctccaggtc agctttaaga ctaacaagac caaaaccact taggcgaacc cgccaatctg 3121 gactagacct ctccaatact ccacgatctg tttgatttga cgacacctag acacctagac 3181 tatagattga tctgatctta tatgatatga tgcgatatga tatgggacaa tagtcgaaat 3241 tgcgaatatt agcgcgagtt atgatgtgtc tatcatttga tttgtacgct aaacgaaatt 3301 attatgattg taattctaat gaaatcttag tgaaaattga tttatttcca tctgtataat 3361 ttaatttaat tatctaaacc aagaaacaaa taacaaaaaa cgaaaaaaaa aaacaaagct 3421 tgaatgaggc aaccaaaaaa cacaacacag aaactaaggc aaactttaga aaaaggaaga 3481 tgtgcaagac aaatgtctat aaattgacaa atgagtaaaa aatgagaggg aataagaagt 3541 aaaaataaaa gaaaagaaaa aacgaaaaac gataaataaa aaaccgcaaa aatatgaata 3601 acaaacgaaa atgatctaag tcgcaatata tagtaactat ttttttttaa cacttatgta 3661 tatgtaattc aattcgatta tattcaatta aacaaagtat ttaaacaagc taaccaaatg 3721 atttaatgtc tattgattta agatttacca acataactct ctcagcttac ctaagtactt 3781 attataatgg atatgcataa atatattgta ttgtattgta ttttgtgttc gttttgcaac 3841 cttaacttac attaacttac cttacattac attacattaa ttctagtgct attcagctct 3901 tatatttaat tcgattcgcc atgatttaca ctcgaagacg aaacgaaaat cgaagataaa 3961 gccgcgatat atcctccaaa cgtaacaaga aaacccaaaa cccaaccccc agcaccgaaa 4021 aacacactca cacgtaatca ttattatata tatgtaacca gatttaatta cccttttttc 4081 gtcgtctaag atttgtattc tcgtattcgt caagtgcaaa ccaaagtaaa tgaaaccaag 4141 aaaacttatt atattatatt aaattatata ttattacgcc tacttattat tccattttta 4201 taattattat aacttattga atgcaacaaa gcgaaacaaa a