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LOCUS XM_044392651 3179 bp mRNA linear INV 09-DEC-2024 variant X3, mRNA. ACCESSION XM_044392651 VERSION XM_044392651.2 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_044392651.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3179 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3179 /gene="otu" /note="ovarian tumor; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:123002485" CDS 108..2702 /gene="otu" /codon_start=1 /product="deubiquitinase otu isoform X1" /protein_id="XP_044248586.1" /db_xref="GeneID:123002485" /translation="MDMQVQRPITSGSRQAPDPYDQYLESRGLYRKHTARDASSLFRV IAEQMYDTQMLHYEIRLECVRFMTLKRRIFEKDIPGDFDSYMQDMSKPKTYGTMTELR AMSCLYRRNVILYEPYNMGTSVIFNRRYPENFRLFFNNENHFDSVYKVNYIESAAICQ SIAFKLLYQQLFKLPDVSFAVEIMLHPHSFNWEKFDVQFDDRGYMVRIQCSDGRVFAL DLPENTNCILENYMLCNFHSTCGNQSIISRKAARRELKNQDDRKQAVSNGHESSEQMP MCPNRLESCVRQLLDDGITPFPYKVAKSMDPYMYRNIEFDCWNDMRKEAKRYNVYVND YNFKVGAKCKVESEHDSEMYTCHIQSISKDKTYCVVFVEAIGKKLGVPYESLHPLPPE EYRPWALPFRYQRHMNRMPLPKFTGKTNKTSSKWKKNKVFEMGQYFEPGKCDLMPMQG YIPVENCYQEMHHHQEELQQRDQRDPDQSDHNPVAEQRDREEPQKQQQLQRSKGSRVQ RQNSNSSQIPESPVSTVPPPTQYMNYVPLLAGRPGQVPPPWPSSPLALTEEFQFPMSG QPHPPPAESCVYMPFGGYGPPPPGALALPGPHPFMPLPPPPLNAPGVGEPRRSLHLNG EDLPMDMVTLRYFYNMGVDMHWRMAHHPPPEELSLIGYSHQNNTDQQSPGRNSGGEEH LAAEATPPPSPEVENGTVQQSPLEKAGGYSKRNLTPAKGRGKRPEHLQDLKDPLGPAA FLPTPTPSPSSNGSQFSFYTSTPPPHHLMSPPRLLQPPPPPPPIFFHKAGPPQLPGTA PGQNPYAWGMATPVVAPYEVINNYNMESAAQSPQQHQQQQQTSPLPPTPVPVQSQPAA VYAAPRHH" misc_feature 168..551 /gene="otu" /note="OTU (ovarian tumor) domain of bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 and similar proteins; Region: OTU_ALG13-like; cd22753" /db_xref="CDD:438590" misc_feature order(225..227,360..362,369..371,390..401,477..479, 483..485,519..521,531..539) /gene="otu" /note="putative polypeptide substrate binding site [polypeptide binding]; other site" /db_xref="CDD:438590" misc_feature 1113..1274 /gene="otu" /note="Tudor domain found in Tudor domain-containing protein 13 (TDRD13) and similar proteins; Region: Tudor_TDRD13-like; cd20380" /db_xref="CDD:410451" misc_feature order(1146..1148,1161..1163,1167..1169,1221..1223, 1230..1232,1236..1238) /gene="otu" /note="putative peptide binding site [polypeptide binding]; other site" /db_xref="CDD:410451" misc_feature <1536..>1826 /gene="otu" /note="DNA translocase FtsK; Provisional; Region: PRK10263" /db_xref="CDD:236669" polyA_site 3179 /gene="otu" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 atttgtattc gtttggcttc gcatgacgcc atcttgaatt gattggtgac tatggtcatc 61 tcgctctaat cttcggtgga acagagccgg tgaaaaaagg agtcgccatg gacatgcaag 121 tgcagcgccc cataacatcc ggcagcagac aggccccgga tccgtacgac cagtacttgg 181 agagccgcgg actctaccgg aagcatacgg cccgggacgc atccagtttg ttccgggtga 241 tcgccgagca gatgtacgac acccagatgc tgcactacga aattcggctg gagtgcgtac 301 gcttcatgac cctaaagcgg cgaatttttg agaaggacat ccccggtgat tttgacagct 361 atatgcagga catgtctaag cccaagacct atggaaccat gacagaactt cgcgctatgt 421 cctgcttgta tcgtcgcaat gtaatcttgt acgagcccta caacatggga accagcgtca 481 ttttcaatcg acgctatccg gaaaacttcc gtctcttctt caacaacgag aaccactttg 541 attcggtgta caaagtgaac tatatagaat ctgctgccat ttgccagtcg atcgccttca 601 agttgctata ccagcagctc ttcaagctgc ccgatgtatc gtttgctgtg gagatcatgt 661 tgcatccgca ttctttcaat tgggaaaagt tcgacgtgca gttcgatgac aggggctata 721 tggttcgcat tcagtgctcc gatggtcgag tcttcgccct tgatctgccc gagaacacca 781 actgcatatt ggagaactat atgctgtgca attttcacag cacctgtgga aatcagagca 841 ttattagtcg aaaggcggca cggcgggagt taaaaaacca ggacgatcga aagcaggctg 901 tcagtaatgg gcacgaatca agcgaacaga tgcccatgtg tcccaaccga ctggaatcct 961 gtgtgcgcca gcttctggat gatggcatca caccgtttcc gtacaaggtg gccaaatcca 1021 tggaccccta catgtatcgg aatatcgaat tcgattgctg gaacgatatg cgcaaggagg 1081 ccaagcgcta taatgtctac gtcaatgact ataactttaa ggtaggcgcc aagtgcaagg 1141 tggaatcgga gcacgactcg gagatgtaca cgtgccacat ccaaagcatc tccaaagaca 1201 agacctactg cgtcgtcttt gtggaggcga ttggcaagaa gctaggggtt ccctacgagt 1261 cgctgcatcc cctgccccca gaagagtacc gtccatgggc gctgcccttc cgctatcagc 1321 gccacatgaa tcgcatgccg ttgcccaagt ttaccggcaa aacaaacaag acctcttcca 1381 agtggaagaa gaacaaggtg ttcgaaatgg gccagtactt tgagcccggc aaatgtgact 1441 tgatgccgat gcagggctac atcccagtgg agaattgcta tcaggagatg caccaccacc 1501 aggaagaact gcagcagcgc gatcaaagag atcccgatca gagtgaccac aatccggtgg 1561 cggagcagcg tgatcgtgag gagccgcaga agcagcagca actgcagcgc tccaagggat 1621 cgagggttca gcggcagaac tcgaattcca gccaaatccc agagtctccg gtttcgactg 1681 ttccaccacc gactcagtac atgaactatg tgcccctgtt ggcgggtcgt cctggccagg 1741 ttccgccgcc ttggccctcg tctccgctgg cgctcaccga ggagttccag tttcccatgt 1801 ccggacaacc gcatccgccg ccagccgaga gctgtgtcta tatgcccttc ggtggttatg 1861 gtccgccacc accgggagcc ctcgctttgc cgggaccgca tccgttcatg ccgctgcctc 1921 cgccgccgct gaatgctccc ggagttggag aaccacgtcg ttcccttcac ctgaacggtg 1981 aggacttgcc aatggatatg gtcaccttga gatatttcta caatatgggc gtggatatgc 2041 attggcgcat ggcccatcac ccaccgcctg aggagctatc gttaattggc tacagtcatc 2101 agaacaacac ggaccaacag tcgccgggaa ggaactctgg cggagaggag catttggccg 2161 ccgaggccac gccaccgcct tcgccagagg tggaaaatgg cacggtgcag cagtcgccgc 2221 tggagaaggc cggcggctac tccaagcgca atttgactcc ggctaaggga cgcggtaaac 2281 ggccggagca tcttcaagat ctaaaggatc cgctagggcc ggcggccttc ttacccacgc 2341 ccacaccatc gcccagctcg aatggcagtc agtttagttt ctacacttcc acaccaccgc 2401 ctcatcatct gatgtcgccg ccgaggctgc tccaaccacc gccgccgccg ccgccgatat 2461 tcttccacaa ggcgggacca cctcagttac cgggaacagc acctggacag aatccctatg 2521 cctggggcat ggctactcct gtggtggccc cctacgaggt gatcaacaac tacaacatgg 2581 agtcggcggc acagtcacca caacaacatc agcagcagca gcagacgtcg cccttgccac 2641 caactcccgt gcccgtccaa tcccagccag cagccgtcta tgctgcaccg cgtcatcact 2701 aaaacgggga aaaaaatcag atcagatcag atcacttcga agagagaggc cattcccgtt 2761 cccgttccca ttcgcattga gtgcattcca atccaaccaa tgacttttaa aatttaaact 2821 catttttaaa tttgtagtca actttttata ggccacctgc tcgatggcgc ttttcaatta 2881 ccgttcagct tctgtacaac aatcgattgc ataatttaac gcaaatgtca acacaacttc 2941 attttaaact tgtaacttaa cgtaatttta tgcgattttt tttaaagtta acaaaggtag 3001 ccggcaagaa aacaaagaac cacctattta tatgatttat ttaaaaccct tccaaactaa 3061 cactatataa tcttatatat ttatgtactc gctgatcggc tagagactca cctatgtaaa 3121 gtgtaccaga aaattaacca taaataaaac aagattcgag tataacgcac aagacaata