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LOCUS XM_044392642 5860 bp mRNA linear INV 09-DEC-2024 Crag (Crag), transcript variant X2, mRNA. ACCESSION XM_044392642 VERSION XM_044392642.2 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_044392642.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5860 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5860 /gene="Crag" /note="DENN domain-containing protein Crag; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108054411" CDS 412..5322 /gene="Crag" /codon_start=1 /product="DENN domain-containing protein Crag isoform X2" /protein_id="XP_044248577.1" /db_xref="GeneID:108054411" /translation="MEEKRIADYFVVAGMPEHPQLLQENSFNDSGRLRAASTIEPITD IGVYFPLLGEEVPEGYELLAHTPTGLQANLNHGSVRTTDCYIYFRRGKDRPPLVDIGV LYDGHERIMSDAEIVAETPGGRVANVNNSSAKTFLTYRRARADMPCNELVVTELCVIV QSKGERAPHAFCLIYKTLNKGYVGSDVYLCYKKSMYRPKHISYKPEILLRYPTVDHTD FPLNLCPSVPLFCLPMGASLEAWPHVNGTEKRKPISPVFSTFVLTVNDGTYKVYGSAL TFYEDYDESQLSAEQKELLGWNEEFGGQHSLHMIKAICLLSHHPFGDTFDKWLKYLHR MVLYGVNIPIPVERYITQLLDEVPFPAPSIHLQLSSESNDRILLTQPEDSPLPRSGAG FHMLLQNLGTDNCLHVLLLALTEQKILIHSLRPATLTAVAEAIVSLLFPFKWQCPYIP LCPLGLSEVLHAPLPYLIGVDSRFFDLYEPPTDVTCIDLDTNNISLCESQRHLSPKLL PKRAARLLRQTLTELENAKPISYDSTNSLDRDIRKRKRELVLEQRIQEAFLLFMASIL RGYRDFLVPISKAPSVGATDPSALFQLKAFLRSRDKSHQKFFELMMKTQMFIRFIEER SFVSDGDHGLSFFDECAEKVGNYDETPAQLHLVDWDTGQNSERTKYIFPPDSVTPAGG GGGAGVGLAYNYENFTLQPELLQSGKKTALSKFLQLQLNASLSPGSPIARRTKHEIKL SQKMASRCQQHPEAWSKYLLATCYSLYFLILPSMVLDQRHAGKEPEILRAAYDVLVRA SRLKITCDEFCYRIMMQLCGIHNLPVLAVRLHYLMKRSGVQANALTYGFYNRCVLESQ WPQDSTTLSQIRWNRIKNVVLGAAQFRKAGKQRAASKVNKSLSASQDQNLSTLETVDG QSRTSLASSTGGDGGGGGGGGHGLLDFASFDRLRNKLGSIVRQTVTGGNNEAGSLLIP GERSAPNTPTYGGDTEILAKALQQQQPRKQIMSIGGDDDEEEDEEEEEEDDYTTGSPS TPQKQLEAGGDGLEYAAGGDYEADEEDDDEVDEHVAAQRARQRVQSPTKISPRTPVTQ NDPLGALNEEESSAASATPTQQQQQEDQQDQQQSQIDSSMYTDKPILFRGQRSATFDE STQIGKSMHRSETMPVASSGVTNSLANIGSSLKFTFGPSLTGKKSNELIQGSLSSIKS AASSLTKKFDEIKGVISANSTPTKTNNGHHQHGLHHPHHHHHHHHLHHQQQHGNPEQE EHDAAVHEEGKLRRVSSDLDPWGRLSESRKSSYNNLVPLGENSSTGALHMHAFPALPD NLYSLIGESAADRECDVLIQLTTCSQCHNCSVLVYDEEIMSGWTAEDSNLNTTCHACN KLTVPFLSVQIERQSDQLDGNEEAVSNGTSHKSSLTVPYLNPLVLRKELENILTQEGD IALIKPEFVEEHPIIYWNLLWLMERIESKTHLPELCLPVPSDKEHIDPLSKVKTVHIQ CLWDNLGLHTEASGPPMYILYRETQPLLTDQAQLNKNVIQQIISAIRCNDFATPLKRL ANERHKLKSNGVERSHSFYRDILFLALTAIGRANVDLATFHRDYAAVFDKLTERECNM YYRNQDLPPSASTIFCRAYFRPLLLP" misc_feature 976..1248 /gene="Crag" /note="Domain always found upstream of DENN domain, found in a variety of signalling proteins; Region: uDENN; smart00800" /db_xref="CDD:214824" misc_feature 1333..1887 /gene="Crag" /note="DENN (AEX-3) domain; Region: DENN; pfam02141" /db_xref="CDD:460461" misc_feature 2062..2283 /gene="Crag" /note="Domain always found downstream of DENN domain, found in a variety of signalling proteins; Region: dDENN; smart00801" /db_xref="CDD:129037" misc_feature 2830..2919 /gene="Crag" /note="PPR repeat [structural motif]; Region: PPR repeat" /db_xref="CDD:276811" polyA_site 5860 /gene="Crag" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gttaatcgat agtggttccg caatcgatat caggtggtca aaatctggaa attgtcaatt 61 ttcctctatt tgtaaatgtg ctagagcctt ggccgctcgg ggctgtgcag ttaaccagtg 121 gctacaaata catcgaatta attcagagct tcagccgtcg gaaaagtgtg cgaaaatgat 181 gtaaaggaaa acccaagtag ttcaactgtg tgcgtgtgcg tgtgtgtgtg cgtgtcggtg 241 ttggtgtgtg gaaattaacg tagtgtgaag aagaaaagcg aaggaaaagc gacaattgca 301 gtccaaggcg aacaacaaaa gcagctgaag gttgccccaa agcccacgcc ccccgccccc 361 ttcctcccct gaggaggacg acaaacggga gtgcaaggaa acggcgccgt catggaggag 421 aagcgcatcg ccgactactt tgtggtcgcc ggaatgccgg agcatccgca gctgctgcag 481 gagaacagct tcaatgactc gggaagattg cgggcagcca gcaccatcga accgatcacg 541 gatatcggcg tctactttcc gctgctcggc gaggaggtgc ccgagggata cgagctcctt 601 gcccacacgc ccaccggtct gcaggcgaat ctcaaccacg gatcggtccg caccaccgac 661 tgctacatct acttccggcg gggcaaggat cgccccccgc tggtggacat aggagtcctg 721 tacgatggcc acgaacggat catgtcggat gcggaaatcg tggccgagac tcccggcggt 781 cgggtggcca acgtgaacaa ctcgtcggcg aagaccttcc tcacctaccg tcgtgcccgg 841 gccgacatgc cctgcaacga actggtggtc accgagctgt gcgtcatcgt ccagagcaaa 901 ggggaacggg ctccgcacgc cttctgcctg atctacaaga cgctgaacaa gggttatgtg 961 ggcagcgatg tctatctgtg ctacaagaag tccatgtacc ggccgaagca catcagctac 1021 aagccggaga tcctgctgcg ctaccccacc gtcgatcaca ccgacttccc gctgaatctg 1081 tgccccagcg tgccgctctt ctgcctgccg atgggcgcct ccctggaggc ctggccccac 1141 gtcaacggca ccgagaagcg caagcccatc agtccggtgt tcagcacctt tgtgctcacg 1201 gttaatgatg gcacctacaa ggtctacgga tcggcgttga ccttctacga ggattacgat 1261 gagtcgcagt tgtcggcgga gcagaaggag ctgctcggtt ggaacgagga gttcggtggc 1321 cagcactcgc tgcacatgat caaggccatt tgcctgctgt cgcatcatcc cttcggcgac 1381 accttcgaca agtggctcaa gtacctgcat cgcatggtgc tgtatggcgt taatataccc 1441 attcccgtgg agcgctacat cacccagctg ctggacgaag tgccctttcc ggcgcccagc 1501 atccatctgc agctgtccag cgagtcgaac gatcgcattc tgctcaccca gccggaggat 1561 tcgccgctgc cgcgtagtgg cgccgggttt cacatgctgc tccagaatct gggcaccgac 1621 aattgtctgc atgtcctgct cctcgccctc accgaacaga agatactcat ccactcactc 1681 agacctgcca ccttgactgc tgtggccgag gccattgtct ccctgctgtt ccccttcaaa 1741 tggcagtgcc cctacatccc gctctgtccg ctcggcctct cggaggtgct ccacgcccca 1801 ttgccttatc tcatcggcgt ggactcgcgc ttcttcgatc tgtacgagcc gcccacggat 1861 gtcacctgca tcgatctgga caccaacaac ataagcctgt gcgaatcgca gcgtcacctg 1921 tcgcccaagc tgcttccaaa acgggccgcc cggcttctcc gccagacgct gaccgaactg 1981 gagaacgcca agcccatcag ctacgactcc acgaacagtt tggatcggga catcaggaag 2041 cggaagcggg agttggtgct ggagcagcgc atccaggagg ccttcctgct cttcatggcc 2101 agcattctgc gcggctaccg ggactttctg gtgcccattt ccaaggcgcc atcggtggga 2161 gccaccgatc cgagtgccct cttccagctg aaggcgtttc tgcgatcgcg ggataagtcg 2221 caccagaagt tctttgagct gatgatgaag acccagatgt tcatccggtt catcgaggag 2281 cgctccttcg tctcggacgg cgatcatggc ctgagcttct tcgacgagtg tgcggaaaaa 2341 gtgggcaact acgacgagac gcccgctcag ctgcatttgg tggactggga cacgggccag 2401 aatagcgagc gcaccaagta tatctttccg ccggacagcg ttaccccagc gggaggagga 2461 ggaggagcag gagttggcct cgcctacaac tacgagaact ttacgctgca gccggaactc 2521 ctgcagagcg gcaagaagac ggctttatcg aaattcctgc agctgcagct caacgcctcc 2581 ctttcgcccg gttcgccaat tgcccggcgc accaagcacg agatcaagct ctcccagaaa 2641 atggccagcc gttgccagca gcatccggag gcttggtcca agtacctgct ggccacctgc 2701 tactcgctgt acttcctcat cctgccctcg atggttttgg atcagcggca tgcgggcaag 2761 gagcccgaga ttctgcgcgc cgcctacgat gttctcgtgc gagcgagtcg cctgaagatc 2821 acctgcgatg agttctgcta ccgcatcatg atgcagttgt gtggcatcca caatctaccc 2881 gttctggccg ttcgtctgca ttatcttatg aagcgttcgg gcgtgcaggc gaatgccttg 2941 acctatggct tttacaatcg ctgtgttctg gagtcccagt ggccgcagga tagcactacg 3001 ttgagtcaga ttcgctggaa tcgcatcaag aacgtggttc tcggagcggc gcagtttcgc 3061 aaggcgggca agcagagggc cgcctcgaag gtgaacaaat cgctgagcgc ttcgcaggat 3121 cagaacctca gcactttgga gacggtcgat ggacagtcgc gcaccagttt ggcctcctct 3181 acgggcggcg atggaggagg aggaggcggt ggtggccatg ggctgctcga ctttgcctcc 3241 ttcgatcggc tgaggaacaa gctgggcagc attgtgcggc agacggtgac gggtgggaat 3301 aacgaggctg gaagtttgct tatccctggc gagaggagtg cacccaatac accgacctat 3361 ggcggtgata ccgagatcct ggccaaggcc ctccagcagc agcagccgcg caaacagatc 3421 atgagcattg gcggcgatga cgacgaggag gaggatgagg aagaggagga ggaggatgac 3481 tacaccactg gttcgccgag cacgccgcaa aagcaactgg aggcgggcgg cgatgggctg 3541 gaatacgccg ctggcgggga ttacgaggcg gacgaggagg acgacgatga ggtggatgag 3601 catgtggccg cacagcgggc gcgtcagcgg gtgcagagtc caaccaaaat ctcgccccgc 3661 acgcccgtaa cccaaaacga tccgctgggc gctctgaacg aggaggagtc gagtgccgcc 3721 agtgccacgc ccacacagca gcagcagcag gaggatcagc aggatcagca gcagtcgcag 3781 atcgatagca gcatgtacac cgacaagccg atcctgttcc gcggccagag gagcgccacc 3841 ttcgacgagt ccacgcagat cggcaagagc atgcaccgct cggagacgat gccggtggcc 3901 agcagcgggg tgaccaacag cctggccaac atcggatcct cgctgaagtt cacgttcggt 3961 cccagcctga cgggcaagaa gtcgaacgag ctgatccagg ggagcctgag cagcatcaaa 4021 tcggcggcca gttcgctgac caagaagttc gacgagatca agggcgtgat ctcggccaac 4081 tcgacgccga cgaagacgaa caacggccac catcagcatg gcctgcatca tccgcaccac 4141 caccaccacc accatcatct tcatcatcag cagcagcatg gcaatccgga gcaggaggag 4201 cacgacgccg ccgtccacga ggagggcaag ttgcgtcgcg tctccagcga cctggatccc 4261 tggggccgac tgagcgagtc gcgcaagtcc agctacaaca acttggtgcc gctgggcgag 4321 aatagctcca ccggcgccct ccacatgcac gcctttcccg ctctgcccga caatctctac 4381 agcctgattg gcgagagcgc cgcggatcga gagtgcgatg tgctgatcca gctgacaacc 4441 tgctcgcagt gccacaactg ctcggtgctc gtctacgacg aggagatcat gagcggctgg 4501 acggcggagg actccaatct gaacaccacc tgccatgcct gcaacaagct cacggtgccc 4561 ttcctcagtg tccaaataga gcgtcaatcg gatcagttgg atggcaacga ggaggcagtt 4621 tccaacggca ccagccacaa gtccagcctg accgtgccgt atctaaatcc gctggtgctg 4681 cgcaaggagc tggagaacat actcacccag gagggcgaca ttgcgctgat caagccggag 4741 ttcgtcgagg agcatccgat catctactgg aatctgctct ggctgatgga gcgcatcgag 4801 agcaagacgc acctgccgga gctctgtttg cccgtgccga gcgacaagga gcacatcgat 4861 ccgctgagca aggtgaagac ggtgcacatc cagtgcctgt gggacaacct cggtctgcac 4921 accgaggcca gtggtccgcc gatgtacata ctgtacaggg agacccaacc gctgctcacc 4981 gaccaggcgc agctcaacaa gaatgtcatt cagcaaatca tttcggccat tcggtgcaac 5041 gactttgcca ctccgctgaa gcgtttggcc aacgagcggc acaagctgaa gagcaacggc 5101 gtggagcgat cgcactcctt ctaccgcgac atcctcttcc tggccctcac agccattgga 5161 cgggccaacg tggacctggc cacattccat cgcgactatg cggccgtctt cgacaagctg 5221 acggagcggg agtgcaatat gtactatcgc aaccaggatc taccgccctc ggcatcgacg 5281 atcttctgcc gcgcctactt ccgaccgctc ctgctgccct gacgcagtga ctcgcagctg 5341 gaggaagagg agggggagga tgaggaggag gacacatgat tgaaggcggt accctaaaag 5401 acaagacgac caaaaaattg agtatcaaaa aggatggaag gacaacaaag cgcttatcaa 5461 aaagaagaac cttaggctgg gtcgatttta tagattggac aattattaac taattttttt 5521 tgttagaaat cagagctatt atttacattg taaaagaacg aagagaacgg tatttcggaa 5581 ctattcctag taggctacaa aaaagtataa ttgttttaaa cgacaagaaa aatattcact 5641 tcaaagtgtt cttaggtttt gcgatataat tgttttcatt gtcctcaatt tttcgatttt 5701 tttttcaaac gaacatgcct aatattcaat aacttgacat gtgttaaatt gtgaaaacat 5761 gcaaaaatga ttttgtaaat gacttgatct tacattttaa gtacttaacg atttttcgct 5821 gtttaaactt aatcaaaaag aaaatataca ctcacacatt