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LOCUS XM_044392639 5941 bp mRNA linear INV 09-DEC-2024 Crag (Crag), transcript variant X1, mRNA. ACCESSION XM_044392639 VERSION XM_044392639.2 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_044392639.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5941 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5941 /gene="Crag" /note="DENN domain-containing protein Crag; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108054411" CDS 412..5403 /gene="Crag" /codon_start=1 /product="DENN domain-containing protein Crag isoform X1" /protein_id="XP_044248574.1" /db_xref="GeneID:108054411" /translation="MEEKRIADYFVVAGMPEHPQLLQENSFNDSGRLRAASTIEPITD IGVYFPLLGEEVPEGYELLAHTPTGLQANLNHGSVRTTDCYIYFRRGKDRPPLVDIGV LYDGHERIMSDAEIVAETPGGRVANVNNSSAKTFLTYRRARADMPCNELVVTELCVIV QSKGERAPHAFCLIYKTLNKGYVGSDVYLCYKKSMYRPKHISYKPEILLRYPTVDHTD FPLNLCPSVPLFCLPMGASLEAWPHVNGTEKRKPISPVFSTFVLTVNDGTYKVYGSAL TFYEDYDESQLSAEQKELLGWNEEFGGQHSLHMIKAICLLSHHPFGDTFDKWLKYLHR MVLYGVNIPIPVERYITQLLDEVPFPAPSIHLQLSSESNDRILLTQPEDSPLPRSGAG FHMLLQNLGTDNCLHVLLLALTEQKILIHSLRPATLTAVAEAIVSLLFPFKWQCPYIP LCPLGLSEVLHAPLPYLIGVDSRFFDLYEPPTDVTCIDLDTNNISLCESQRHLSPKLL PKRAARLLRQTLTELENAKPISYDSTNSLDRDIRKRKRELVLEQRIQEAFLLFMASIL RGYRDFLVPISKAPSVGATDPSALFQLKAFLRSRDKSHQKFFELMMKTQMFIRFIEER SFVSDGDHGLSFFDECAEKVGNYDETPAQLHLVDWDTGQNSERTKYIFPPDSVTPAGG GGGAGVGLAYNYENFTLQPELLQSGKKTALSKFLQLQLNASLSPGSPIARRTKHEIKL SQKMASRCQQHPEAWSKYLLATCYSLYFLILPSMVLDQRHAGKEPEILRAAYDVLVRA SRLKITCDEFCYRIMMQLCGIHNLPVLAVRLHYLMKRSGVQANALTYGFYNRCVLESQ WPQDSTTLSQIRWNRIKNVVLGAAQFRKAGKQRAASKVNKSLSASQDQNLSTLETVDG QSRTSLASSTGGDGGGGGGGGHGLLDFASFDRLRNKLGSIVRQTVTGGNNEAGSLLIP GERSAPNTPTYGGDTEILAKALQQQQPRKQIMSIGGDDDEEEDEEEEEEDDYTTGSPS TPQKQLEAGGDGLEYAAGGDYEADEEDDDEVDEHVAAQRARQRVQSPTKISPRTPVTQ NDPLGALNEEESSAASATPTQQQQQEDQQDQQQSQIDSSMYTDKPILFRGQRSATFDE STQIGKSMHRSETMPVASSGVTNSLANIGSSLKFTFGRYSPARLSLKKDLKLPANIIE NISSISPSLTGKKSNELIQGSLSSIKSAASSLTKKFDEIKGVISANSTPTKTNNGHHQ HGLHHPHHHHHHHHLHHQQQHGNPEQEEHDAAVHEEGKLRRVSSDLDPWGRLSESRKS SYNNLVPLGENSSTGALHMHAFPALPDNLYSLIGESAADRECDVLIQLTTCSQCHNCS VLVYDEEIMSGWTAEDSNLNTTCHACNKLTVPFLSVQIERQSDQLDGNEEAVSNGTSH KSSLTVPYLNPLVLRKELENILTQEGDIALIKPEFVEEHPIIYWNLLWLMERIESKTH LPELCLPVPSDKEHIDPLSKVKTVHIQCLWDNLGLHTEASGPPMYILYRETQPLLTDQ AQLNKNVIQQIISAIRCNDFATPLKRLANERHKLKSNGVERSHSFYRDILFLALTAIG RANVDLATFHRDYAAVFDKLTERECNMYYRNQDLPPSASTIFCRAYFRPLLLP" misc_feature 976..1248 /gene="Crag" /note="Domain always found upstream of DENN domain, found in a variety of signalling proteins; Region: uDENN; smart00800" /db_xref="CDD:214824" misc_feature 1333..1887 /gene="Crag" /note="DENN (AEX-3) domain; Region: DENN; pfam02141" /db_xref="CDD:460461" misc_feature 2062..2283 /gene="Crag" /note="Domain always found downstream of DENN domain, found in a variety of signalling proteins; Region: dDENN; smart00801" /db_xref="CDD:129037" misc_feature 2830..2919 /gene="Crag" /note="PPR repeat [structural motif]; Region: PPR repeat" /db_xref="CDD:276811" polyA_site 5941 /gene="Crag" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gttaatcgat agtggttccg caatcgatat caggtggtca aaatctggaa attgtcaatt 61 ttcctctatt tgtaaatgtg ctagagcctt ggccgctcgg ggctgtgcag ttaaccagtg 121 gctacaaata catcgaatta attcagagct tcagccgtcg gaaaagtgtg cgaaaatgat 181 gtaaaggaaa acccaagtag ttcaactgtg tgcgtgtgcg tgtgtgtgtg cgtgtcggtg 241 ttggtgtgtg gaaattaacg tagtgtgaag aagaaaagcg aaggaaaagc gacaattgca 301 gtccaaggcg aacaacaaaa gcagctgaag gttgccccaa agcccacgcc ccccgccccc 361 ttcctcccct gaggaggacg acaaacggga gtgcaaggaa acggcgccgt catggaggag 421 aagcgcatcg ccgactactt tgtggtcgcc ggaatgccgg agcatccgca gctgctgcag 481 gagaacagct tcaatgactc gggaagattg cgggcagcca gcaccatcga accgatcacg 541 gatatcggcg tctactttcc gctgctcggc gaggaggtgc ccgagggata cgagctcctt 601 gcccacacgc ccaccggtct gcaggcgaat ctcaaccacg gatcggtccg caccaccgac 661 tgctacatct acttccggcg gggcaaggat cgccccccgc tggtggacat aggagtcctg 721 tacgatggcc acgaacggat catgtcggat gcggaaatcg tggccgagac tcccggcggt 781 cgggtggcca acgtgaacaa ctcgtcggcg aagaccttcc tcacctaccg tcgtgcccgg 841 gccgacatgc cctgcaacga actggtggtc accgagctgt gcgtcatcgt ccagagcaaa 901 ggggaacggg ctccgcacgc cttctgcctg atctacaaga cgctgaacaa gggttatgtg 961 ggcagcgatg tctatctgtg ctacaagaag tccatgtacc ggccgaagca catcagctac 1021 aagccggaga tcctgctgcg ctaccccacc gtcgatcaca ccgacttccc gctgaatctg 1081 tgccccagcg tgccgctctt ctgcctgccg atgggcgcct ccctggaggc ctggccccac 1141 gtcaacggca ccgagaagcg caagcccatc agtccggtgt tcagcacctt tgtgctcacg 1201 gttaatgatg gcacctacaa ggtctacgga tcggcgttga ccttctacga ggattacgat 1261 gagtcgcagt tgtcggcgga gcagaaggag ctgctcggtt ggaacgagga gttcggtggc 1321 cagcactcgc tgcacatgat caaggccatt tgcctgctgt cgcatcatcc cttcggcgac 1381 accttcgaca agtggctcaa gtacctgcat cgcatggtgc tgtatggcgt taatataccc 1441 attcccgtgg agcgctacat cacccagctg ctggacgaag tgccctttcc ggcgcccagc 1501 atccatctgc agctgtccag cgagtcgaac gatcgcattc tgctcaccca gccggaggat 1561 tcgccgctgc cgcgtagtgg cgccgggttt cacatgctgc tccagaatct gggcaccgac 1621 aattgtctgc atgtcctgct cctcgccctc accgaacaga agatactcat ccactcactc 1681 agacctgcca ccttgactgc tgtggccgag gccattgtct ccctgctgtt ccccttcaaa 1741 tggcagtgcc cctacatccc gctctgtccg ctcggcctct cggaggtgct ccacgcccca 1801 ttgccttatc tcatcggcgt ggactcgcgc ttcttcgatc tgtacgagcc gcccacggat 1861 gtcacctgca tcgatctgga caccaacaac ataagcctgt gcgaatcgca gcgtcacctg 1921 tcgcccaagc tgcttccaaa acgggccgcc cggcttctcc gccagacgct gaccgaactg 1981 gagaacgcca agcccatcag ctacgactcc acgaacagtt tggatcggga catcaggaag 2041 cggaagcggg agttggtgct ggagcagcgc atccaggagg ccttcctgct cttcatggcc 2101 agcattctgc gcggctaccg ggactttctg gtgcccattt ccaaggcgcc atcggtggga 2161 gccaccgatc cgagtgccct cttccagctg aaggcgtttc tgcgatcgcg ggataagtcg 2221 caccagaagt tctttgagct gatgatgaag acccagatgt tcatccggtt catcgaggag 2281 cgctccttcg tctcggacgg cgatcatggc ctgagcttct tcgacgagtg tgcggaaaaa 2341 gtgggcaact acgacgagac gcccgctcag ctgcatttgg tggactggga cacgggccag 2401 aatagcgagc gcaccaagta tatctttccg ccggacagcg ttaccccagc gggaggagga 2461 ggaggagcag gagttggcct cgcctacaac tacgagaact ttacgctgca gccggaactc 2521 ctgcagagcg gcaagaagac ggctttatcg aaattcctgc agctgcagct caacgcctcc 2581 ctttcgcccg gttcgccaat tgcccggcgc accaagcacg agatcaagct ctcccagaaa 2641 atggccagcc gttgccagca gcatccggag gcttggtcca agtacctgct ggccacctgc 2701 tactcgctgt acttcctcat cctgccctcg atggttttgg atcagcggca tgcgggcaag 2761 gagcccgaga ttctgcgcgc cgcctacgat gttctcgtgc gagcgagtcg cctgaagatc 2821 acctgcgatg agttctgcta ccgcatcatg atgcagttgt gtggcatcca caatctaccc 2881 gttctggccg ttcgtctgca ttatcttatg aagcgttcgg gcgtgcaggc gaatgccttg 2941 acctatggct tttacaatcg ctgtgttctg gagtcccagt ggccgcagga tagcactacg 3001 ttgagtcaga ttcgctggaa tcgcatcaag aacgtggttc tcggagcggc gcagtttcgc 3061 aaggcgggca agcagagggc cgcctcgaag gtgaacaaat cgctgagcgc ttcgcaggat 3121 cagaacctca gcactttgga gacggtcgat ggacagtcgc gcaccagttt ggcctcctct 3181 acgggcggcg atggaggagg aggaggcggt ggtggccatg ggctgctcga ctttgcctcc 3241 ttcgatcggc tgaggaacaa gctgggcagc attgtgcggc agacggtgac gggtgggaat 3301 aacgaggctg gaagtttgct tatccctggc gagaggagtg cacccaatac accgacctat 3361 ggcggtgata ccgagatcct ggccaaggcc ctccagcagc agcagccgcg caaacagatc 3421 atgagcattg gcggcgatga cgacgaggag gaggatgagg aagaggagga ggaggatgac 3481 tacaccactg gttcgccgag cacgccgcaa aagcaactgg aggcgggcgg cgatgggctg 3541 gaatacgccg ctggcgggga ttacgaggcg gacgaggagg acgacgatga ggtggatgag 3601 catgtggccg cacagcgggc gcgtcagcgg gtgcagagtc caaccaaaat ctcgccccgc 3661 acgcccgtaa cccaaaacga tccgctgggc gctctgaacg aggaggagtc gagtgccgcc 3721 agtgccacgc ccacacagca gcagcagcag gaggatcagc aggatcagca gcagtcgcag 3781 atcgatagca gcatgtacac cgacaagccg atcctgttcc gcggccagag gagcgccacc 3841 ttcgacgagt ccacgcagat cggcaagagc atgcaccgct cggagacgat gccggtggcc 3901 agcagcgggg tgaccaacag cctggccaac atcggatcct cgctgaagtt cacgttcgga 3961 cgttattcac ccgcacgatt gtcccttaag aaagacttga aattgcccgc caatattata 4021 gaaaatatat cgagcataag tcccagcctg acgggcaaga agtcgaacga gctgatccag 4081 gggagcctga gcagcatcaa atcggcggcc agttcgctga ccaagaagtt cgacgagatc 4141 aagggcgtga tctcggccaa ctcgacgccg acgaagacga acaacggcca ccatcagcat 4201 ggcctgcatc atccgcacca ccaccaccac caccatcatc ttcatcatca gcagcagcat 4261 ggcaatccgg agcaggagga gcacgacgcc gccgtccacg aggagggcaa gttgcgtcgc 4321 gtctccagcg acctggatcc ctggggccga ctgagcgagt cgcgcaagtc cagctacaac 4381 aacttggtgc cgctgggcga gaatagctcc accggcgccc tccacatgca cgcctttccc 4441 gctctgcccg acaatctcta cagcctgatt ggcgagagcg ccgcggatcg agagtgcgat 4501 gtgctgatcc agctgacaac ctgctcgcag tgccacaact gctcggtgct cgtctacgac 4561 gaggagatca tgagcggctg gacggcggag gactccaatc tgaacaccac ctgccatgcc 4621 tgcaacaagc tcacggtgcc cttcctcagt gtccaaatag agcgtcaatc ggatcagttg 4681 gatggcaacg aggaggcagt ttccaacggc accagccaca agtccagcct gaccgtgccg 4741 tatctaaatc cgctggtgct gcgcaaggag ctggagaaca tactcaccca ggagggcgac 4801 attgcgctga tcaagccgga gttcgtcgag gagcatccga tcatctactg gaatctgctc 4861 tggctgatgg agcgcatcga gagcaagacg cacctgccgg agctctgttt gcccgtgccg 4921 agcgacaagg agcacatcga tccgctgagc aaggtgaaga cggtgcacat ccagtgcctg 4981 tgggacaacc tcggtctgca caccgaggcc agtggtccgc cgatgtacat actgtacagg 5041 gagacccaac cgctgctcac cgaccaggcg cagctcaaca agaatgtcat tcagcaaatc 5101 atttcggcca ttcggtgcaa cgactttgcc actccgctga agcgtttggc caacgagcgg 5161 cacaagctga agagcaacgg cgtggagcga tcgcactcct tctaccgcga catcctcttc 5221 ctggccctca cagccattgg acgggccaac gtggacctgg ccacattcca tcgcgactat 5281 gcggccgtct tcgacaagct gacggagcgg gagtgcaata tgtactatcg caaccaggat 5341 ctaccgccct cggcatcgac gatcttctgc cgcgcctact tccgaccgct cctgctgccc 5401 tgacgcagtg actcgcagct ggaggaagag gagggggagg atgaggagga ggacacatga 5461 ttgaaggcgg taccctaaaa gacaagacga ccaaaaaatt gagtatcaaa aaggatggaa 5521 ggacaacaaa gcgcttatca aaaagaagaa ccttaggctg ggtcgatttt atagattgga 5581 caattattaa ctaatttttt ttgttagaaa tcagagctat tatttacatt gtaaaagaac 5641 gaagagaacg gtatttcgga actattccta gtaggctaca aaaaagtata attgttttaa 5701 acgacaagaa aaatattcac ttcaaagtgt tcttaggttt tgcgatataa ttgttttcat 5761 tgtcctcaat ttttcgattt ttttttcaaa cgaacatgcc taatattcaa taacttgaca 5821 tgtgttaaat tgtgaaaaca tgcaaaaatg attttgtaaa tgacttgatc ttacatttta 5881 agtacttaac gatttttcgc tgtttaaact taatcaaaaa gaaaatatac actcacacat 5941 t