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LOCUS XM_044392579 5982 bp mRNA linear INV 09-DEC-2024 X2, mRNA. ACCESSION XM_044392579 VERSION XM_044392579.2 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_044392579.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5982 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5982 /gene="chas" /note="chascon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108056691" CDS 621..5306 /gene="chas" /codon_start=1 /product="uncharacterized protein chas isoform X2" /protein_id="XP_044248514.1" /db_xref="GeneID:108056691" /translation="MVVILLLSPCTCSRSSSSSHAHEPAHAPPKHHQHHQQALQPPEP PQANSGDSRSSNESSSASTGDTAIPAGYLQLHHQKQKEKQKDQQDQHYPQQPSHSHST TAPPLPKVFGHGRWLPLQPPANAVPKPPRTHGLGIHWPSNVYAPAPNQPIIFRVQSSL PNGSFTNATTTTTSTTDYVRHVTRVNFYDIDTSQVEFEPKDDEESNEATASNCDTEAI TKEEEWITKRKTELTTTRQIETRVKRNVKLQDGKVIEDSGPIVSTNTTEDTDKQETET TEKRDLDLPDDLDGNAQLIDVAALQAGAVNETQLAQIQEVFGPADGAGKLVKRMVPRP VDGLVRQTDDKRVISHEEIKDYHETEDVKHHGDFTDQTYVNAVRDGVEDLEAVLCSPE SQRQLVPLGPQVVANRSKSRKTIDSEDTQKRCLAQEDGTLVTESRRTTEHELILDDEL PDLPAANSDERGLQLQVGEQVTTTAANQRFFRQRDEQHVDVLANGRLQSTEMRYAAET TQMDKDGPADLERPGDWDSLSDRMRKLRRSQQQQQKEVALLADRKDALTKRPLDFDRE EETRKGETMKWLESHFGSESTASNDSRDDEADAEAVEPTKKSYFNVTIKSQSQPQAHA QHIHAQSHLATQQHAHPQHISHGHHPQTLPRSAERERERERERERERHPTAATLERKP PGNSAGGRSKYFQGISNWSERKDPQGSPAVNHFSSQAFRDDLQETIRRNGLKKKVSGP PGSSQGSLALAQEQQQQPKDSYVSREDILQQKRQSLSSQFLARSMRGSRDALDDLEAI PGPGPGPGPSINSPRGPEEPSHKRVAYGHRSGAINGHAVNGGAMTNGRGKSYEPAAQP PPQLPTAVPVGVLEYSGNGGGSQLSLNPRPTVPQRRRAIEKKLGEHSHSHSHHSSSHT SHTGGHLPAVKSQAPLPSQVSQLEPPPDYSPPPRSRSRSSSPQVDYLMTRDVPASTMT LSRKQQQRTRFAPTSSYPPATGGAGNLRPPGATSASTSNLSAMSGGHGGGSTSKSSRM GQAIGNSLRKLVSKIRSASAERKFRMKSAASKSREQSPSPGHDPRGGGGGGVGPPVTT YQQYNVIDGHIGSHDSEDSNSDNQRRRERERERERERERERERERDRDREREREPPKQ ENQSRLNFKRAESADPQLQHLEHQAISPRQRYYLGEDPYSSTLYGKENLYERRPRQRN MERPDERMERLEREDDYYESRAPPPVTAAHTLGRYQKHGQRFSGSTPNLHQQQQDYRS AQTLPRKLHEQRSQQRFGNGMEKQSSGRGNYLPVAPGPQQQRGMNQNPIPSPSSNPIP GQMQPQGPAKPARTYAKVLNRSKSFNVHGMNGSNDPSPIYIEKLTRNNYQQPRQQLQQ QQEPNFGYGLGQGPNANYKSNPHLFSGKDNSLKGGLKSPSIVNLISRSQKDLTKIGPG NDDDEIVGGSYQQEQDKKQLYLRGLHQQAPDLYRVIHGDEEYGGGGSRKYPLQAKYSL DSRSPPSVELNKDTASIVRRSSEVDHQQQQQHHHQQHHHHHIQQQNLRRGSGATIIEL RTAAGGHRK" misc_feature <4344..4697 /gene="chas" /note="polyadenylate binding protein, human types 1, 2, 3, 4 family; Region: PABP-1234; TIGR01628" /db_xref="CDD:130689" polyA_site 5982 /gene="chas" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cgacggccag cagtcgcaga cgcgccatcg aacacgccgc tcgcgatcgc gctctccatt 61 cggattttcc atttttcatt ttccattttc cgtttctcgg ttttccagcg tttttcgttt 121 ttcgcttttc cgtttcggtt tccatttcgt tggcgcttca tttaacacaa ccgcttaaat 181 tgaaaggccc gcggaatcga tctaaattta attgtattcg tattctgttt tattgttttt 241 ttgtttgttc attgtcgcgt tgcacttgac tttttttgtt cgtgtggttt tttgcactaa 301 ttgcctgaat ggcaaaggca aagtgcaaag tgtgacagtg caagagataa agagtgagcg 361 agatagatag agagaaggaa tccgggctta atcatcgcaa gctggagccg tgaatcgcgc 421 tctgcgatgt ggtgcgagct ctggacttgc cgccgagcaa taccacaaac tggagcgatt 481 ggaactggaa gcgggagtgg aatcggaacg ggaactgggc ggagaactgg agggcaggag 541 gtgcatgagg agggcgagca gatgtagtcg gcagttaaag cagagccacc gttgccaccg 601 ccaccgcgtc agatgatcga atggtggtga tcctcctact gtcgccatgc acttgcagcc 661 gcagcagcag cagcagccac gcccacgaac ccgcccacgc accacccaag catcatcagc 721 accaccaaca agcactccaa ccaccagaac caccacaagc caatagtgga gattcccgga 781 gcagcaatga atcttcatcg gcatccacgg gcgacacagc cattccggct ggatatctgc 841 agttgcacca ccagaaacag aaagagaaac aaaaggatca gcaggatcag cattaccccc 901 agcaacctag tcatagtcat agcaccacag caccaccact gcccaaggtt tttggccatg 961 gaagatggtt gcccctgcaa ccgcctgcga atgccgtgcc caagccaccg cgcacccatg 1021 gattgggcat ccattggcca tcgaacgttt atgcccctgc cccaaatcaa ccgatcatct 1081 tccgcgtcca atcgtcactg cccaacggga gctttactaa cgccacaacc accaccacca 1141 gcaccactga ctacgtgcgt cacgtgaccc gcgttaactt ctacgacatt gatacttcgc 1201 aggtcgaatt cgagcccaaa gatgacgagg agagcaacga ggccacggca agcaattgcg 1261 atacagaagc tataaccaaa gaagaggagt ggataacgaa gcgcaagacc gaactcacaa 1321 ctaccagaca gatcgaaacg agagtaaagc gaaatgtgaa gctgcaggat ggcaaggtga 1381 tcgaggattc gggacccatt gtgtccacaa acacgaccga ggacaccgat aagcaggaga 1441 cggaaaccac tgagaaacgc gaccttgacc tgcccgatga ccttgatggc aatgcccagc 1501 tgatcgatgt ggccgccctg caggcgggcg ccgtaaatga aacgcagttg gcccaaattc 1561 aagaggtctt cggaccggcg gatggggctg ggaagctggt caagcggatg gttccacgtc 1621 cggtggacgg actagtgcgt cagacggacg acaagcgggt aatatcgcac gaggagatca 1681 aggactacca cgaaacggag gacgtcaagc atcacggcga ctttactgat cagacctacg 1741 tgaacgcagt tcgcgacgga gtcgaggacc tcgaggccgt cctctgttcg ccggagagcc 1801 agcgacagtt ggtgcccctc ggaccgcagg tggtggccaa tcggagcaag tcccgcaaga 1861 ccatcgactc ggaggacacg cagaagcgtt gcctggccca ggaggacggc actttggtca 1921 ccgagagtcg gcgcaccacc gagcacgagc taatcctcga cgacgagctg cccgatcttc 1981 cagctgcgaa ctccgatgaa cgcggactgc agctccaggt gggcgagcag gtgaccacca 2041 cggcggccaa tcagcggttc ttccgccagc gggacgagca gcatgtggac gtgctagcca 2101 acgggcggct ccaatccacc gagatgcgct acgccgccga gaccacgcag atggacaagg 2161 acggacccgc cgatctggag cgaccgggcg actgggacag cctctccgac cggatgcgca 2221 agcttcgccg ctcccagcag cagcaacaga aggaggttgc ccttttggcg gatcgcaagg 2281 atgcgctgac caagcgaccc ctggacttcg atcgcgagga ggagacgcgc aagggcgaga 2341 cgatgaagtg gctggagtcg cactttggca gcgagtccac cgcctccaac gattcccgcg 2401 acgacgaggc cgatgcggaa gccgtggagc cgaccaagaa gagctacttc aatgtgacaa 2461 tcaagtcgca gagccagccg caggcgcatg cgcagcacat ccatgcccaa tcgcacctgg 2521 ccacccagca gcatgcgcat ccgcagcaca tctcccatgg ccaccacccg cagacgctgc 2581 ccaggagcgc cgaaagggag agggagaggg agagggaaag agaaagggaa cgccatccca 2641 cagccgccac gctggagagg aagccgccgg gcaactcggc cggcggtcgc tccaagtact 2701 tccagggcat ctcgaactgg tcggaacgca aggatcccca gggatccccg gcggtcaatc 2761 acttctcgtc gcaggccttt cgcgacgatc tgcaggagac cattcgaagg aatgggctga 2821 agaagaaggt cagcggcccg cctggttcca gtcagggatc cctggctttg gcccaggagc 2881 agcagcagca gcccaaggac agctatgtca gccgcgagga tatactgcag cagaagcgcc 2941 agagtctctc ctcacagttc ctggcccgct cgatgcgtgg ctctcgcgat gccctggacg 3001 atttggaggc cataccggga ccaggacctg gaccgggtcc atctataaac tcaccgcgtg 3061 gccccgagga accgtcgcat aagagagtag cctacggtca tcgcagcggc gccatcaacg 3121 ggcatgcggt aaacggagga gcgatgacca atggacgtgg caagagctat gagccagctg 3181 ctcagcctcc tcctcagctg cccaccgcag ttccagttgg agttctagag tacagcggca 3241 atggcggtgg cagccagctg agcctcaatc cgcgacccac cgtcccgcag cgacgacgtg 3301 ccatcgaaaa gaagctgggc gagcacagcc acagccacag ccaccactca tcatcccaca 3361 catcgcatac gggcggtcat ctgccggcag tcaagtcgca ggctccgctg ccctcgcagg 3421 tcagccagct ggaaccgccg ccggactact cgccgccgcc caggagtcgc agtcgctcgt 3481 cctcgccgca ggtggactac ctgatgacca gagatgtgcc cgccagcacg atgaccctca 3541 gccggaagca gcagcagcgc acccgattcg cacccacatc cagctatccg ccggcaaccg 3601 gaggggcagg caacctccgg ccaccgggcg ccacctcggc ctccacctcg aacctgtcgg 3661 ccatgagcgg aggtcacggc ggaggcagta cctccaagtc cagccgcatg ggccaggcga 3721 ttggcaattc gctgcggaag ctggtcagca aaatccgttc ggccagtgcc gagcgaaagt 3781 ttcgaatgaa atcggcggcc agcaagtcgc gcgaacagtc gcccagtccg ggacacgatc 3841 cccggggtgg aggaggagga ggagtgggtc caccggtgac cacctaccag cagtacaatg 3901 tgatcgatgg gcacatcggt agccacgatt ccgaggactc caatagcgat aatcagcggc 3961 gcagggagag ggagcgagaa agggagcgcg agcgggaaag ggagcgggaa agggaaagag 4021 atcgagatcg ggaacgggaa agggagcctc ccaagcagga gaaccaatcg cgtttgaatt 4081 tcaagcgcgc cgagtccgcg gatccccagc tgcagcacct ggagcaccag gccatcagtc 4141 ccaggcagcg gtactacctg ggcgaagatc cctactccag cacgctctac ggcaaggaga 4201 atctctacga gcgacggcca cgccagcgca acatggagcg tccggacgag cgaatggagc 4261 gcttggagcg agaggatgac tactacgagt cgcgggctcc gccgccggtg acggctgccc 4321 acacgttggg tcgctaccag aagcacggcc agcgcttcag tggctctacg cccaatctgc 4381 accagcagca gcaggactac cgctcggccc agacgctgcc gcgcaagttg cacgagcagc 4441 gcagccagca gagattcggc aacgggatgg agaagcagtc gtctggtagg ggcaactacc 4501 tgccggttgc tcctggaccg cagcagcaaa gggggatgaa ccagaatccc attccaagtc 4561 ccagcagcaa tccgattccc ggccagatgc agccgcaggg accggcgaaa ccggccagga 4621 cctacgccaa ggtcctgaat cgcagcaaga gctttaatgt gcacgggatg aacggaagca 4681 acgaccccag tcccatctac atcgagaagc tcacgcggaa caactaccaa cagccacgcc 4741 agcagctgca acagcagcag gagccgaact ttggctatgg tttgggccag ggacccaatg 4801 ccaactacaa gtccaatccg catctcttct ccggcaagga caactcgctg aagggcggcc 4861 tgaagagccc ctcgattgtg aatctcataa gtcgcagcca aaaggatctc acgaagatcg 4921 ggccgggcaa cgatgacgac gagatcgtcg gcggcagcta tcagcaggag caggataaga 4981 agcagctgta tttgcgtggc ctgcatcaac aggcaccgga tctttaccgc gtgatacatg 5041 gcgacgagga gtacggtggc ggtggctcca ggaagtatcc gctgcaggcc aagtattcgc 5101 tggactcgcg ttcgccgccc tccgtggagc tcaacaagga taccgcgagc attgtgcggc 5161 gcagcagcga ggtggaccat cagcagcagc agcagcatca ccaccagcag caccaccacc 5221 atcacatcca gcaacagaat ctgcgacgtg gctcgggagc caccatcatt gagctgcgca 5281 ccgccgccgg tggccatcgc aagtaattcg ccattatcct accaagacca taagatccta 5341 cactcctata ttttgaaacc atagtcgagc tttccttgtg tctagtgttt aaattcctca 5401 tttggaactt tttcaatttt taaaatcaaa atacattata aaattcacta agaacctaaa 5461 aaatagcatt gggaaagctc gactatttaa ttccctacca tattccctaa ctatttgcta 5521 acaaatgctc ggccgtgggc tttagtttca tttgacaagc agcaaataaa aacaaaaagg 5581 ccaatcaacc aattgatacc aattgttaaa tgggtaatga aaaagctata aagttgatgg 5641 taaatcgata acgaaataca aaagtaatgt taaaaaaata taaaaatcaa aagataagaa 5701 aagaaaatct aaaagcaacg tggaagccat tcccactgtc ctgccacgcc tcttccaatc 5761 gtaatttgat aatacctact ataatgccta catacgccta attacattgt ctattttatc 5821 atttttgttt ttttttttac tactaatatt aacgtttgtt gtatagatac cgttaaatcg 5881 ataaactaac taaaataact aatattaatt cgatattatt gtacaatttt gattaataaa 5941 caaattgcaa ttaaaattaa aataaagtgc caaaataaac aa