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LOCUS XM_041592010 6802 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X49, mRNA. ACCESSION XM_041592010 VERSION XM_041592010.1 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6802 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6802 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 51 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6653 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X49" /protein_id="XP_041447944.1" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLEDIDPFYSNILT FVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIITTILVNCILMIM PTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDFVVIALAYVTMG IDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALM GLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDGISFPLCGNISG AGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDLYQLVLRAAGPW HMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIREAEEAAAAKAA KLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEKGNDDNNKEKMS IRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNIRRGSRSSHKYTI RNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLG SRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTTC LDPNHKVEHRDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAA GRHSRASDRGEDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQEWISLIVFDP FVELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATMKLCAMSPKY YFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISIMG RTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNFTDFMHSFMI VFRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGSSSLSA PTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSEHGDNELELG HDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNNKPKKSKYLNNATMIGNSIN HQDNRLEHELNHRGLSLQDDDTASINSYGSHKNRPFKDESHKGSAETMEGEEKRDASK EDLGIDEELDEEGELEEGPLDGDIIIHANDEDILDEYPADCCPDSYYKKFPILAGDDD SPFWQGWGNLRLKTFQLIENKYFETAVITMILMSSLALALEDVHLPQRPILQDILYYM DRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGIQAFK TMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAG KYFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQVATFKGWI QIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDNFNEQKKKA GGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRPQAIVFEIVTDKKFDIVIMLF IGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSSECLLKIFALRYHYFIEPWNLFD VVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMS LPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQMSTSA GWDGVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLLSYLVISFLIVINMYIAVIL ENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEFLDVLEPPLQIHKP NKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGNPIEETGEIGEIAARPDTEGYE PVSSTLWRQREEYCARLIQHAWRKHKTRAEGGGAPSDAEGDGPEDGDAGGGGGAALML GVLDVPDAAGDAATTGSHDGATALDPETDPSGVPAAAAVAPQPAGDGGEGPDGGATAD PHESNVNSPTMDGATAGSPGAGSAGSTGRQTAVLVESDGFVTKNGHKVVIHSRSPSIT SRTADV" misc_feature 654..1508 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1863..2420 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2625..3260 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3336..4070 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4080..4895 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4863..5021 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 4908..4919 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 5043..5795 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5826..5969 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gagatccgat atgatgacga ggacgaggat gaaggtccac 421 aaccggatcc tacacttgaa cagggtgtgc caatacctgt tcgactgcag ggcagcttcc 481 ctccggaatt ggcctccact cccctcgagg atatcgatcc cttctacagc aatatactga 541 cattcgtagt tgtaagcaaa ggaaaagata tttttcgctt ttctgcatca aaagcaatgt 601 ggctgctcga tccattcaat ccgatacgtc gtgtggccat ttacatttta gtgcatccac 661 tattttcgtt attcatcatt accacaattc tcgtcaactg catcctgatg ataatgccga 721 caacgcccac agttgagtcc actgaggtga tattcaccgg aatctacaca tttgaatcag 781 ctgttaaagt gatggcacga ggtttcattt tatgcccgtt tacgtatctt agagatgcat 841 ggaattggct ggacttcgta gtaatagctt tagcttatgt gaccatgggt atagatttag 901 gtaatcttgc agccttgcga acgtttaggg tgctgcgagc gcttaaaacc gtagccattg 961 tgccaggctt gaagaccatt gtcggtgcgg tcatcgaatc tgtaaagaat ctgcgcgatg 1021 tgataatttt gacaatgttc tccctgtcgg tgttcgcgct gatggggctg caaatctaca 1081 tgggcgtgct aacgcagaag tgcatcaaga agttcccgct ggacggctcc tggggcaacc 1141 tgaccgacga gaactgggcc tatcacaata gcaacaactc taattggtat tcggaagacg 1201 acggtatatc ctttccgttg tgcggtaata tctctggagc ggggcaatgt gaagacgatt 1261 acgtgtgtct gcaggggttc gggccgaacc cgaactatgg ctacaccagt ttcgattcgt 1321 tcggttgggc gtttctgtcc gccttccggc tgatgacgca ggacttctgg gaggatctgt 1381 atcagctggt gttgcgtgcc gcaggaccct ggcacatgct gttctttata gtcatcatct 1441 tcctaggttc attctatctt gtgaatttga ttttggccat tgttgccatg tcgtatgacg 1501 aattgcaaaa gaaggccgaa gaagaagagg ctgccgaaga ggaggcgata cgtgaagccg 1561 aggaagctgc cgccgccaaa gcagccaagc tggaggagcg cgccaatgcg caggcccagg 1621 ccgccgccga tgcagctgcc gccgaagagg cggctcttca tccggagatg gccaagagtc 1681 cgacgtattc gtgcatcagc tatgagctat ttgtgggcgg cgagaaaggc aacgatgaca 1741 acaacaagga gaagatgtcc atacgcagcg ttgaggtgga gtcggagtcg gtgagcgtta 1801 tacaaagaca accagcacct accacagcac accaagctac caaagttcgt aaagtgagca 1861 cgacatcctt atccttacct ggttcaccgt ttaacatacg caggggatca cgtagttctc 1921 acaagtacac gatccggaat ggacgtggac gctttggtat acccggcagc gatcgcaagc 1981 cgttggtatt gtcaacatat caggatgctc agcagcactt gccctatgcc gatgattcga 2041 acgctgttac gcccatgtcc gaggagaacg gtgccattat agtgcccgtt tattatggaa 2101 atctaggctc caggcattca tcgtatactt cgcatcagtc cagaatatcg tatacctcac 2161 atggcgatct attgggcggc atggccgtca tgggcgtcag cacaatgacc aaggagagca 2221 aattgcgaaa tcgcaactca cgcaatcaat cagtgggcgc caccaatggc ggcaccacct 2281 gcctggaccc caatcacaag gtcgagcatc gcgacttcga aatcggtctg gagtgcacgg 2341 acgaagctgg caagattaaa catcatgaca atccttttat cgagcccgtc cagacacaaa 2401 cggtagtcga catgaaagat gtgatggtac tgaatgacat tatcgaacag gccgctggtc 2461 ggcacagtcg ggctagtgat cgcggtgagg acgatgatga ggatgggccg acattaaaag 2521 acaaggccct cgaagcgcta atgaaaggca tcgaagtgtt ttgtgtgtgg gactgttgct 2581 gggtttggtt gaaattgcag gagtggatat cgctgatcgt cttcgatccc tttgtcgagc 2641 tcttcatcac gctgtgcatt gtggtcaaca cgatgttcat ggccatggac catcacgaca 2701 tgaacaagga gatggaacgc atccttaagt gcggaaatta tttcttcacg gcaacattcg 2761 ccattgaggc aaccatgaaa ctgtgcgcca tgagccccaa atactatttc caggagggct 2821 ggaacatctt tgacttcatc attgtggcac tctcattgct ggagctgggc ctcgagggcg 2881 ttcagggcct ctccgtcttg cgttcgtttc gtttgctgcg tgtattcaaa ttggccaagt 2941 cctggccaac acttaattta ctcatttcga ttatgggacg caccatgggc gctttgggta 3001 atctgacatt tgtactttgc attatcatct tcatctttgc ggtgatggga atgcaactgt 3061 tcggaaagaa ttatcatgat aacaaggatc gcttcccgga cggtgacctg ccccgctgga 3121 acttcaccga cttcatgcac agcttcatga tcgtgtttcg ggtgctatgc ggcgagtgga 3181 tcgagtccat gtgggactgt atgcacgtgg gcgatgtatc gtgcattcca ttcttcttgg 3241 ccaccgttgt catcggcaat ttagtggttc ttaacctttt cttagccctg cttttgtcaa 3301 attttggttc atctagctta tcagcgccga cagccgataa cgataccaat aaaatagccg 3361 aggccttcaa tcgaattggg cgatttaaaa gttgggttaa gcgtaatatt gctgattgtt 3421 tcaagttaat acgtaacaaa ttgacaaatc aaataagtga tcaaccatca gagcacggcg 3481 acaacgagct ggagctgggc cacgacgaga tactcgccga cgggctcatc aagaagggca 3541 tcaaggaggc gacacagctg gaggtggcca tcggtgatgg catggagttc acgatacacg 3601 gcgacatgaa gaacaacaag ccgaagaaat ccaaatatct aaataacgca acgatgattg 3661 gcaactcaat taaccaccaa gacaatagac tggaacacga gctaaaccat agaggtttgt 3721 ccttacagga cgacgacact gccagcatta actcatatgg tagccataag aatcgaccat 3781 tcaaggatga gagccacaag ggcagcgccg agacgatgga gggcgaggag aagcgggacg 3841 ccagcaagga ggatttaggt atcgatgagg agctcgacga ggagggcgaa ttggaggagg 3901 gcccgctcga cggcgatatc atcatacatg ccaacgatga ggatatactc gatgaatatc 3961 cagctgattg ctgccccgat tcgtactata agaaatttcc gatcttagcc ggtgatgatg 4021 actcgccgtt ctggcaagga tggggcaatt tacgactgaa aacttttcaa ttaattgaaa 4081 ataaatattt tgaaacagct gttatcacta tgattttaat gagtagctta gctttggcat 4141 tagaagatgt acatctgcca caaagaccca tactgcagga tattttatac tatatggaca 4201 gaatatttac ggttatattc ttcttggaaa tgttaatcaa gtggctggcg ctcggcttca 4261 aagtgtactt cacgaacgcg tggtgctggc tcgatttcgt cattgtcatg gtatcgctta 4321 tcaacttcgt tgcttcactt gttggagctg gtggtattca agccttcaag actatgcgaa 4381 cgttaagagc actgagacca ctacgtgcca tgtcccgtat gcagggcatg agggtcgtcg 4441 ttaatgcgct ggtacaagct ataccgtcca tcttcaatgt gctattggtg tgtctaatat 4501 tttggctaat ttttgccata atgggtgtac agctttttgc tggaaaatat tttaagtgcg 4561 aggacatgaa tggcacgaag ctcagccacg agatcatacc aaatcgcaat gcctgcgaaa 4621 gcgagaacta cacgtgggtg aattcagcaa tgaatttcga tcatgtaggt aacgcgtatc 4681 tgtgcctttt ccaagtggcc accttcaaag gctggataca aatcatgaac gatgctatcg 4741 attcacgaga ggtggacaag cagccaattc gtgaaacgaa catctacatg tatttatatt 4801 tcgtattctt catcatattt ggatcatttt tcacactcaa tctgttcatt ggtgttatca 4861 ttgataattt taatgagcaa aagaaaaaag caggtggatc attagaaatg ttcatgacag 4921 aagatcagaa aaagtactat aatgctatga aaaagatggg ctctaaaaaa ccattaaaag 4981 ccattccaag accaaggtgg cgtccacaag caatagtctt tgaaatagta accgataaga 5041 aattcgatat agtcataatg ttattcattg gtctgaacat gttcaccatg acactcgatc 5101 gttacgatgc gtcggacacg tacaacgcgg tccttgacta tctcaatgcg atattcgtag 5161 ttattttcag ttccgaatgt ctattaaaaa tattcgcttt acgatatcac tattttattg 5221 agccatggaa tttatttgat gtagtagttg tcattttatc catcttaggt ctcgtactta 5281 gcgatattat cgagaaatac ttcgtatcgc cgacactgct ccgagtggtg cgcgtggcca 5341 aagtgggtcg cgtactgcgt ctggtgaagg gcgccaaggg tatacgaacg ctgctgttcg 5401 ccctggccat gtcgctgccg gcgctgttca acatctgcct gctgctgttc ctggtcatgt 5461 tcatcttcgc gatattcggc atgtcgttct tcatgcatgt gaaggagaag agcggcatca 5521 acgacgtcta caacttcaag acgttcggac agagcatgat cctgctcttt cagatgtcta 5581 cctcagccgg ttgggatggt gtactcgacg ccattatcaa tgaggaagca tgcgatccac 5641 ccgacaacga caaaggctat ccgggcaatt gtggttcagc gaccgttgga ataacgtttc 5701 tcctctcata cctagttata agctttttga tagttattaa tatgtacatt gctgtcattc 5761 tcgagaacta tagtcaggcc accgaggatg tgcaggaggg tctcaccgac gacgattacg 5821 atatgtacta tgagatctgg caacagttcg atccggaggg cacccagtac atacgatacg 5881 accagctgtc cgagttcctc gacgtgctgg agcccccgct ccagattcac aagcccaaca 5941 agtacaaaat catatcgatg gacataccca tctgtcgcgg tgacctcatg tactgtgtgg 6001 acatactgga cgcactgacc aaagactttt tcgcgcgcaa aggcaatccc attgaggaga 6061 cgggcgagat tggtgagatt gccgccaggc cggacaccga gggctacgag cccgtctcct 6121 ccaccctctg gcgacagcgg gaggagtact gtgcccgcct cattcaacat gcctggcgca 6181 agcataaaac gcgcgccgag ggcggtggtg caccgtccga cgcggaaggc gacggccccg 6241 aagatggtga tgcgggtggc ggtggcgggg cggcgctgat gctgggtgtt ctggatgttc 6301 cagatgctgc tggcgatgca gcaaccactg gctcccatga cggggcaacg gcactcgatc 6361 ccgagaccga tccatcggga gtaccggcgg cagcggcggt ggccccacag ccagccggtg 6421 acggcggcga gggaccggat ggaggagcaa cagccgatcc gcacgagagc aatgtaaata 6481 gtccgacgat ggacggcgcg acggcgggca gcccgggcgc agggagcgct ggcagcactg 6541 gccgacagac ggccgttctc gtggagagcg atgggtttgt gaccaagaac gggcacaagg 6601 ttgtaataca ctcgcgttcg ccgagcataa cgtcgcgcac ggcggatgtc tgagccaggc 6661 ctcgcccccc cctccaagat gcacgcgagt attaggtgca ggtgcagatg cagtgcagtg 6721 gtggtgccac aacaacaaca acaacaacag caggtgccac tggtagctgc aattgcaact 6781 gcaacagcag caacaggaag aa