PREDICTED: Drosophila obscura sodium channel protein para
LOCUS XM_041592009 6835 bp mRNA linear INV 14-MAY-2021
(LOC111070739), transcript variant X48, mRNA.
ACCESSION XM_041592009
VERSION XM_041592009.1
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..6835
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..6835
/gene="LOC111070739"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 53 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 7 samples with support for all annotated
introns"
/db_xref="GeneID:111070739"
CDS 237..6686
/gene="LOC111070739"
/codon_start=1
/product="sodium channel protein para isoform X48"
/protein_id="XP_041447943.1"
/db_xref="GeneID:111070739"
/translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK
RAEGEPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLE
DIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIIT
TILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDF
VVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIIL
TMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDG
ISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDL
YQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIR
EAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEK
GNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNIR
RGSRSSHKYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGA
IIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQ
SVGATNGGTTCLDPNHKVEHRDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDV
MVLNDIIEQAAGRHSRASDRGEDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKL
QEWISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEA
TMKLCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSW
PTLNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRW
NFTDFMHSFMIVFRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALL
LSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQP
SEHGDNELELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNNKPKKSKYL
NNATMIGNSINHQDNRLEHELNHRGLSLQDDDTASINSYGSHKNRPFKDESHKGSAET
MEGEEKRDASKEDLGIDEELDEEGELEEGPLDGDIIIHANDEDILDEYPADCCPDSYY
KKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAVITMILMSSLALALEDVHLPQ
RPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVIVMVSLINFVAS
LVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLI
FAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLC
LFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLFIGVI
IDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRPQAIVFEIVT
DKKFDIVIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSSECLLKIFALRY
HYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGRVLRLVKGAKG
IRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQS
MILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLLSYLVISFL
IVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEFLD
VLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGNPIEETGEIGE
IAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKTRAEGGGAPSDAEGDGPEDGD
AGGGGGAALMLGVLDVPDAAGDAATTGSHDGATALDPETDPSGVPAAAAVAPQPAGDG
GEGPDGGATADPHESNVNSPTMDGATAGSPGAGSAGSTGRQTAVLVESDGFVTKNGHK
VVIHSRSPSITSRTADV"
misc_feature 687..1541
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 1896..2453
/gene="LOC111070739"
/note="Cytoplasmic domain of voltage-gated Na+ ion
channel; Region: Na_trans_cytopl; pfam11933"
/db_xref="CDD:463401"
misc_feature 2658..3293
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 3369..4103
/gene="LOC111070739"
/note="Sodium ion transport-associated; Region:
Na_trans_assoc; pfam06512"
/db_xref="CDD:461936"
misc_feature 4113..4928
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 4896..5054
/gene="LOC111070739"
/note="Inactivation gate of the voltage-gated sodium
channel alpha subunits; Region: Na_channel_gate; cd13433"
/db_xref="CDD:240441"
misc_feature 4941..4952
/gene="LOC111070739"
/note="putative hydrophobic latch; other site"
/db_xref="CDD:240441"
misc_feature 5076..5828
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 5859..6002
/gene="LOC111070739"
/note="Voltage-dependent L-type calcium channel,
IQ-associated; Region: GPHH; pfam16905"
/db_xref="CDD:465306"
ORIGIN
1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca
61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg
121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac
181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga
241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg
301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg
361 aaagaaagag agccgaggga gagccgcaat atggtcgcaa gaaaaaacaa aaagaaatcc
421 gatatgatga cgaggacgag gatgaaggtc cacaaccgga tcctacactt gaacagggtg
481 tgccaatacc tgttcgactg cagggcagct tccctccgga attggcctcc actcccctcg
541 aggatatcga tcccttctac agcaatatac tgacattcgt agttgtaagc aaaggaaaag
601 atatttttcg cttttctgca tcaaaagcaa tgtggctgct cgatccattc aatccgatac
661 gtcgtgtggc catttacatt ttagtgcatc cactattttc gttattcatc attaccacaa
721 ttctcgtcaa ctgcatcctg atgataatgc cgacaacgcc cacagttgag tccactgagg
781 tgatattcac cggaatctac acatttgaat cagctgttaa agtgatggca cgaggtttca
841 ttttatgccc gtttacgtat cttagagatg catggaattg gctggacttc gtagtaatag
901 ctttagctta tgtgaccatg ggtatagatt taggtaatct tgcagccttg cgaacgttta
961 gggtgctgcg agcgcttaaa accgtagcca ttgtgccagg cttgaagacc attgtcggtg
1021 cggtcatcga atctgtaaag aatctgcgcg atgtgataat tttgacaatg ttctccctgt
1081 cggtgttcgc gctgatgggg ctgcaaatct acatgggcgt gctaacgcag aagtgcatca
1141 agaagttccc gctggacggc tcctggggca acctgaccga cgagaactgg gcctatcaca
1201 atagcaacaa ctctaattgg tattcggaag acgacggtat atcctttccg ttgtgcggta
1261 atatctctgg agcggggcaa tgtgaagacg attacgtgtg tctgcagggg ttcgggccga
1321 acccgaacta tggctacacc agtttcgatt cgttcggttg ggcgtttctg tccgccttcc
1381 ggctgatgac gcaggacttc tgggaggatc tgtatcagct ggtgttgcgt gccgcaggac
1441 cctggcacat gctgttcttt atagtcatca tcttcctagg ttcattctat cttgtgaatt
1501 tgattttggc cattgttgcc atgtcgtatg acgaattgca aaagaaggcc gaagaagaag
1561 aggctgccga agaggaggcg atacgtgaag ccgaggaagc tgccgccgcc aaagcagcca
1621 agctggagga gcgcgccaat gcgcaggccc aggccgccgc cgatgcagct gccgccgaag
1681 aggcggctct tcatccggag atggccaaga gtccgacgta ttcgtgcatc agctatgagc
1741 tatttgtggg cggcgagaaa ggcaacgatg acaacaacaa ggagaagatg tccatacgca
1801 gcgttgaggt ggagtcggag tcggtgagcg ttatacaaag acaaccagca cctaccacag
1861 cacaccaagc taccaaagtt cgtaaagtga gcacgacatc cttatcctta cctggttcac
1921 cgtttaacat acgcagggga tcacgtagtt ctcacaagta cacgatccgg aatggacgtg
1981 gacgctttgg tatacccggc agcgatcgca agccgttggt attgtcaaca tatcaggatg
2041 ctcagcagca cttgccctat gccgatgatt cgaacgctgt tacgcccatg tccgaggaga
2101 acggtgccat tatagtgccc gtttattatg gaaatctagg ctccaggcat tcatcgtata
2161 cttcgcatca gtccagaata tcgtatacct cacatggcga tctattgggc ggcatggccg
2221 tcatgggcgt cagcacaatg accaaggaga gcaaattgcg aaatcgcaac tcacgcaatc
2281 aatcagtggg cgccaccaat ggcggcacca cctgcctgga ccccaatcac aaggtcgagc
2341 atcgcgactt cgaaatcggt ctggagtgca cggacgaagc tggcaagatt aaacatcatg
2401 acaatccttt tatcgagccc gtccagacac aaacggtagt cgacatgaaa gatgtgatgg
2461 tactgaatga cattatcgaa caggccgctg gtcggcacag tcgggctagt gatcgcggtg
2521 aggacgatga tgaggatggg ccgacattaa aagacaaggc cctcgaagcg ctaatgaaag
2581 gcatcgaagt gttttgtgtg tgggactgtt gctgggtttg gttgaaattg caggagtgga
2641 tatcgctgat cgtcttcgat ccctttgtcg agctcttcat cacgctgtgc attgtggtca
2701 acacgatgtt catggccatg gaccatcacg acatgaacaa ggagatggaa cgcatcctta
2761 agtgcggaaa ttatttcttc acggcaacat tcgccattga ggcaaccatg aaactgtgcg
2821 ccatgagccc caaatactat ttccaggagg gctggaacat ctttgacttc atcattgtgg
2881 cactctcatt gctggagctg ggcctcgagg gcgttcaggg cctctccgtc ttgcgttcgt
2941 ttcgtttgct gcgtgtattc aaattggcca agtcctggcc aacacttaat ttactcattt
3001 cgattatggg acgcaccatg ggcgctttgg gtaatctgac atttgtactt tgcattatca
3061 tcttcatctt tgcggtgatg ggaatgcaac tgttcggaaa gaattatcat gataacaagg
3121 atcgcttccc ggacggtgac ctgccccgct ggaacttcac cgacttcatg cacagcttca
3181 tgatcgtgtt tcgggtgcta tgcggcgagt ggatcgagtc catgtgggac tgtatgcacg
3241 tgggcgatgt atcgtgcatt ccattcttct tggccaccgt tgtcatcggc aatttagtgg
3301 ttcttaacct tttcttagcc ctgcttttgt caaattttgg ttcatctagc ttatcagcgc
3361 cgacagccga taacgatacc aataaaatag ccgaggcctt caatcgaatt gggcgattta
3421 aaagttgggt taagcgtaat attgctgatt gtttcaagtt aatacgtaac aaattgacaa
3481 atcaaataag tgatcaacca tcagagcacg gcgacaacga gctggagctg ggccacgacg
3541 agatactcgc cgacgggctc atcaagaagg gcatcaagga ggcgacacag ctggaggtgg
3601 ccatcggtga tggcatggag ttcacgatac acggcgacat gaagaacaac aagccgaaga
3661 aatccaaata tctaaataac gcaacgatga ttggcaactc aattaaccac caagacaata
3721 gactggaaca cgagctaaac catagaggtt tgtccttaca ggacgacgac actgccagca
3781 ttaactcata tggtagccat aagaatcgac cattcaagga tgagagccac aagggcagcg
3841 ccgagacgat ggagggcgag gagaagcggg acgccagcaa ggaggattta ggtatcgatg
3901 aggagctcga cgaggagggc gaattggagg agggcccgct cgacggcgat atcatcatac
3961 atgccaacga tgaggatata ctcgatgaat atccagctga ttgctgcccc gattcgtact
4021 ataagaaatt tccgatctta gccggtgatg atgactcgcc gttctggcaa ggatggggca
4081 atttacgact gaaaactttt caattaattg aaaataaata ttttgaaaca gctgttatca
4141 ctatgatttt aatgagtagc ttagctttgg cattagaaga tgtacatctg ccacaaagac
4201 ccatactgca ggatatttta tactatatgg acagaatatt tacggttata ttcttcttgg
4261 aaatgttaat caagtggctg gcgctcggct tcaaagtgta cttcacgaac gcgtggtgct
4321 ggctcgattt cgtcattgtc atggtatcgc ttatcaactt cgttgcttca cttgttggag
4381 ctggtggtat tcaagccttc aagactatgc gaacgttaag agcactgaga ccactacgtg
4441 ccatgtcccg tatgcagggc atgagggtcg tcgttaatgc gctggtacaa gctataccgt
4501 ccatcttcaa tgtgctattg gtgtgtctaa tattttggct aatttttgcc ataatgggtg
4561 tacagctttt tgctggaaaa tattttaagt gcgaggacat gaatggcacg aagctcagcc
4621 acgagatcat accaaatcgc aatgcctgcg aaagcgagaa ctacacgtgg gtgaattcag
4681 caatgaattt cgatcatgta ggtaacgcgt atctgtgcct tttccaagtg gccaccttca
4741 aaggctggat acaaatcatg aacgatgcta tcgattcacg agaggtggac aagcagccaa
4801 ttcgtgaaac gaacatctac atgtatttat atttcgtatt cttcatcata tttggatcat
4861 ttttcacact caatctgttc attggtgtta tcattgataa ttttaatgag caaaagaaaa
4921 aagcaggtgg atcattagaa atgttcatga cagaagatca gaaaaagtac tataatgcta
4981 tgaaaaagat gggctctaaa aaaccattaa aagccattcc aagaccaagg tggcgtccac
5041 aagcaatagt ctttgaaata gtaaccgata agaaattcga tatagtcata atgttattca
5101 ttggtctgaa catgttcacc atgacactcg atcgttacga tgcgtcggac acgtacaacg
5161 cggtccttga ctatctcaat gcgatattcg tagttatttt cagttccgaa tgtctattaa
5221 aaatattcgc tttacgatat cactatttta ttgagccatg gaatttattt gatgtagtag
5281 ttgtcatttt atccatctta ggtctcgtac ttagcgatat tatcgagaaa tacttcgtat
5341 cgccgacact gctccgagtg gtgcgcgtgg ccaaagtggg tcgcgtactg cgtctggtga
5401 agggcgccaa gggtatacga acgctgctgt tcgccctggc catgtcgctg ccggcgctgt
5461 tcaacatctg cctgctgctg ttcctggtca tgttcatctt cgcgatattc ggcatgtcgt
5521 tcttcatgca tgtgaaggag aagagcggca tcaacgacgt ctacaacttc aagacgttcg
5581 gacagagcat gatcctgctc tttcagatgt ctacctcagc cggttgggat ggtgtactcg
5641 acgccattat caatgaggaa gcatgcgatc cacccgacaa cgacaaaggc tatccgggca
5701 attgtggttc agcgaccgtt ggaataacgt ttctcctctc atacctagtt ataagctttt
5761 tgatagttat taatatgtac attgctgtca ttctcgagaa ctatagtcag gccaccgagg
5821 atgtgcagga gggtctcacc gacgacgatt acgatatgta ctatgagatc tggcaacagt
5881 tcgatccgga gggcacccag tacatacgat acgaccagct gtccgagttc ctcgacgtgc
5941 tggagccccc gctccagatt cacaagccca acaagtacaa aatcatatcg atggacatac
6001 ccatctgtcg cggtgacctc atgtactgtg tggacatact ggacgcactg accaaagact
6061 ttttcgcgcg caaaggcaat cccattgagg agacgggcga gattggtgag attgccgcca
6121 ggccggacac cgagggctac gagcccgtct cctccaccct ctggcgacag cgggaggagt
6181 actgtgcccg cctcattcaa catgcctggc gcaagcataa aacgcgcgcc gagggcggtg
6241 gtgcaccgtc cgacgcggaa ggcgacggcc ccgaagatgg tgatgcgggt ggcggtggcg
6301 gggcggcgct gatgctgggt gttctggatg ttccagatgc tgctggcgat gcagcaacca
6361 ctggctccca tgacggggca acggcactcg atcccgagac cgatccatcg ggagtaccgg
6421 cggcagcggc ggtggcccca cagccagccg gtgacggcgg cgagggaccg gatggaggag
6481 caacagccga tccgcacgag agcaatgtaa atagtccgac gatggacggc gcgacggcgg
6541 gcagcccggg cgcagggagc gctggcagca ctggccgaca gacggccgtt ctcgtggaga
6601 gcgatgggtt tgtgaccaag aacgggcaca aggttgtaat acactcgcgt tcgccgagca
6661 taacgtcgcg cacggcggat gtctgagcca ggcctcgccc ccccctccaa gatgcacgcg
6721 agtattaggt gcaggtgcag atgcagtgca gtggtggtgc cacaacaaca acaacaacaa
6781 cagcaggtgc cactggtagc tgcaattgca actgcaacag cagcaacagg aagaa