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LOCUS XM_041592009 6835 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X48, mRNA. ACCESSION XM_041592009 VERSION XM_041592009.1 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6835 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6835 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 53 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6686 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X48" /protein_id="XP_041447943.1" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLE DIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIIT TILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDF VVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIIL TMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDG ISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDL YQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIR EAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEK GNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNIR RGSRSSHKYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGA IIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQ SVGATNGGTTCLDPNHKVEHRDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDV MVLNDIIEQAAGRHSRASDRGEDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKL QEWISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEA TMKLCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSW PTLNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRW NFTDFMHSFMIVFRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALL LSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQP SEHGDNELELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNNKPKKSKYL NNATMIGNSINHQDNRLEHELNHRGLSLQDDDTASINSYGSHKNRPFKDESHKGSAET MEGEEKRDASKEDLGIDEELDEEGELEEGPLDGDIIIHANDEDILDEYPADCCPDSYY KKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAVITMILMSSLALALEDVHLPQ RPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVIVMVSLINFVAS LVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLI FAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLC LFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLFIGVI IDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRPQAIVFEIVT DKKFDIVIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSSECLLKIFALRY HYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGRVLRLVKGAKG IRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQS MILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLLSYLVISFL IVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEFLD VLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGNPIEETGEIGE IAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKTRAEGGGAPSDAEGDGPEDGD AGGGGGAALMLGVLDVPDAAGDAATTGSHDGATALDPETDPSGVPAAAAVAPQPAGDG GEGPDGGATADPHESNVNSPTMDGATAGSPGAGSAGSTGRQTAVLVESDGFVTKNGHK VVIHSRSPSITSRTADV" misc_feature 687..1541 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1896..2453 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2658..3293 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3369..4103 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4113..4928 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4896..5054 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 4941..4952 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 5076..5828 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5859..6002 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gagccgcaat atggtcgcaa gaaaaaacaa aaagaaatcc 421 gatatgatga cgaggacgag gatgaaggtc cacaaccgga tcctacactt gaacagggtg 481 tgccaatacc tgttcgactg cagggcagct tccctccgga attggcctcc actcccctcg 541 aggatatcga tcccttctac agcaatatac tgacattcgt agttgtaagc aaaggaaaag 601 atatttttcg cttttctgca tcaaaagcaa tgtggctgct cgatccattc aatccgatac 661 gtcgtgtggc catttacatt ttagtgcatc cactattttc gttattcatc attaccacaa 721 ttctcgtcaa ctgcatcctg atgataatgc cgacaacgcc cacagttgag tccactgagg 781 tgatattcac cggaatctac acatttgaat cagctgttaa agtgatggca cgaggtttca 841 ttttatgccc gtttacgtat cttagagatg catggaattg gctggacttc gtagtaatag 901 ctttagctta tgtgaccatg ggtatagatt taggtaatct tgcagccttg cgaacgttta 961 gggtgctgcg agcgcttaaa accgtagcca ttgtgccagg cttgaagacc attgtcggtg 1021 cggtcatcga atctgtaaag aatctgcgcg atgtgataat tttgacaatg ttctccctgt 1081 cggtgttcgc gctgatgggg ctgcaaatct acatgggcgt gctaacgcag aagtgcatca 1141 agaagttccc gctggacggc tcctggggca acctgaccga cgagaactgg gcctatcaca 1201 atagcaacaa ctctaattgg tattcggaag acgacggtat atcctttccg ttgtgcggta 1261 atatctctgg agcggggcaa tgtgaagacg attacgtgtg tctgcagggg ttcgggccga 1321 acccgaacta tggctacacc agtttcgatt cgttcggttg ggcgtttctg tccgccttcc 1381 ggctgatgac gcaggacttc tgggaggatc tgtatcagct ggtgttgcgt gccgcaggac 1441 cctggcacat gctgttcttt atagtcatca tcttcctagg ttcattctat cttgtgaatt 1501 tgattttggc cattgttgcc atgtcgtatg acgaattgca aaagaaggcc gaagaagaag 1561 aggctgccga agaggaggcg atacgtgaag ccgaggaagc tgccgccgcc aaagcagcca 1621 agctggagga gcgcgccaat gcgcaggccc aggccgccgc cgatgcagct gccgccgaag 1681 aggcggctct tcatccggag atggccaaga gtccgacgta ttcgtgcatc agctatgagc 1741 tatttgtggg cggcgagaaa ggcaacgatg acaacaacaa ggagaagatg tccatacgca 1801 gcgttgaggt ggagtcggag tcggtgagcg ttatacaaag acaaccagca cctaccacag 1861 cacaccaagc taccaaagtt cgtaaagtga gcacgacatc cttatcctta cctggttcac 1921 cgtttaacat acgcagggga tcacgtagtt ctcacaagta cacgatccgg aatggacgtg 1981 gacgctttgg tatacccggc agcgatcgca agccgttggt attgtcaaca tatcaggatg 2041 ctcagcagca cttgccctat gccgatgatt cgaacgctgt tacgcccatg tccgaggaga 2101 acggtgccat tatagtgccc gtttattatg gaaatctagg ctccaggcat tcatcgtata 2161 cttcgcatca gtccagaata tcgtatacct cacatggcga tctattgggc ggcatggccg 2221 tcatgggcgt cagcacaatg accaaggaga gcaaattgcg aaatcgcaac tcacgcaatc 2281 aatcagtggg cgccaccaat ggcggcacca cctgcctgga ccccaatcac aaggtcgagc 2341 atcgcgactt cgaaatcggt ctggagtgca cggacgaagc tggcaagatt aaacatcatg 2401 acaatccttt tatcgagccc gtccagacac aaacggtagt cgacatgaaa gatgtgatgg 2461 tactgaatga cattatcgaa caggccgctg gtcggcacag tcgggctagt gatcgcggtg 2521 aggacgatga tgaggatggg ccgacattaa aagacaaggc cctcgaagcg ctaatgaaag 2581 gcatcgaagt gttttgtgtg tgggactgtt gctgggtttg gttgaaattg caggagtgga 2641 tatcgctgat cgtcttcgat ccctttgtcg agctcttcat cacgctgtgc attgtggtca 2701 acacgatgtt catggccatg gaccatcacg acatgaacaa ggagatggaa cgcatcctta 2761 agtgcggaaa ttatttcttc acggcaacat tcgccattga ggcaaccatg aaactgtgcg 2821 ccatgagccc caaatactat ttccaggagg gctggaacat ctttgacttc atcattgtgg 2881 cactctcatt gctggagctg ggcctcgagg gcgttcaggg cctctccgtc ttgcgttcgt 2941 ttcgtttgct gcgtgtattc aaattggcca agtcctggcc aacacttaat ttactcattt 3001 cgattatggg acgcaccatg ggcgctttgg gtaatctgac atttgtactt tgcattatca 3061 tcttcatctt tgcggtgatg ggaatgcaac tgttcggaaa gaattatcat gataacaagg 3121 atcgcttccc ggacggtgac ctgccccgct ggaacttcac cgacttcatg cacagcttca 3181 tgatcgtgtt tcgggtgcta tgcggcgagt ggatcgagtc catgtgggac tgtatgcacg 3241 tgggcgatgt atcgtgcatt ccattcttct tggccaccgt tgtcatcggc aatttagtgg 3301 ttcttaacct tttcttagcc ctgcttttgt caaattttgg ttcatctagc ttatcagcgc 3361 cgacagccga taacgatacc aataaaatag ccgaggcctt caatcgaatt gggcgattta 3421 aaagttgggt taagcgtaat attgctgatt gtttcaagtt aatacgtaac aaattgacaa 3481 atcaaataag tgatcaacca tcagagcacg gcgacaacga gctggagctg ggccacgacg 3541 agatactcgc cgacgggctc atcaagaagg gcatcaagga ggcgacacag ctggaggtgg 3601 ccatcggtga tggcatggag ttcacgatac acggcgacat gaagaacaac aagccgaaga 3661 aatccaaata tctaaataac gcaacgatga ttggcaactc aattaaccac caagacaata 3721 gactggaaca cgagctaaac catagaggtt tgtccttaca ggacgacgac actgccagca 3781 ttaactcata tggtagccat aagaatcgac cattcaagga tgagagccac aagggcagcg 3841 ccgagacgat ggagggcgag gagaagcggg acgccagcaa ggaggattta ggtatcgatg 3901 aggagctcga cgaggagggc gaattggagg agggcccgct cgacggcgat atcatcatac 3961 atgccaacga tgaggatata ctcgatgaat atccagctga ttgctgcccc gattcgtact 4021 ataagaaatt tccgatctta gccggtgatg atgactcgcc gttctggcaa ggatggggca 4081 atttacgact gaaaactttt caattaattg aaaataaata ttttgaaaca gctgttatca 4141 ctatgatttt aatgagtagc ttagctttgg cattagaaga tgtacatctg ccacaaagac 4201 ccatactgca ggatatttta tactatatgg acagaatatt tacggttata ttcttcttgg 4261 aaatgttaat caagtggctg gcgctcggct tcaaagtgta cttcacgaac gcgtggtgct 4321 ggctcgattt cgtcattgtc atggtatcgc ttatcaactt cgttgcttca cttgttggag 4381 ctggtggtat tcaagccttc aagactatgc gaacgttaag agcactgaga ccactacgtg 4441 ccatgtcccg tatgcagggc atgagggtcg tcgttaatgc gctggtacaa gctataccgt 4501 ccatcttcaa tgtgctattg gtgtgtctaa tattttggct aatttttgcc ataatgggtg 4561 tacagctttt tgctggaaaa tattttaagt gcgaggacat gaatggcacg aagctcagcc 4621 acgagatcat accaaatcgc aatgcctgcg aaagcgagaa ctacacgtgg gtgaattcag 4681 caatgaattt cgatcatgta ggtaacgcgt atctgtgcct tttccaagtg gccaccttca 4741 aaggctggat acaaatcatg aacgatgcta tcgattcacg agaggtggac aagcagccaa 4801 ttcgtgaaac gaacatctac atgtatttat atttcgtatt cttcatcata tttggatcat 4861 ttttcacact caatctgttc attggtgtta tcattgataa ttttaatgag caaaagaaaa 4921 aagcaggtgg atcattagaa atgttcatga cagaagatca gaaaaagtac tataatgcta 4981 tgaaaaagat gggctctaaa aaaccattaa aagccattcc aagaccaagg tggcgtccac 5041 aagcaatagt ctttgaaata gtaaccgata agaaattcga tatagtcata atgttattca 5101 ttggtctgaa catgttcacc atgacactcg atcgttacga tgcgtcggac acgtacaacg 5161 cggtccttga ctatctcaat gcgatattcg tagttatttt cagttccgaa tgtctattaa 5221 aaatattcgc tttacgatat cactatttta ttgagccatg gaatttattt gatgtagtag 5281 ttgtcatttt atccatctta ggtctcgtac ttagcgatat tatcgagaaa tacttcgtat 5341 cgccgacact gctccgagtg gtgcgcgtgg ccaaagtggg tcgcgtactg cgtctggtga 5401 agggcgccaa gggtatacga acgctgctgt tcgccctggc catgtcgctg ccggcgctgt 5461 tcaacatctg cctgctgctg ttcctggtca tgttcatctt cgcgatattc ggcatgtcgt 5521 tcttcatgca tgtgaaggag aagagcggca tcaacgacgt ctacaacttc aagacgttcg 5581 gacagagcat gatcctgctc tttcagatgt ctacctcagc cggttgggat ggtgtactcg 5641 acgccattat caatgaggaa gcatgcgatc cacccgacaa cgacaaaggc tatccgggca 5701 attgtggttc agcgaccgtt ggaataacgt ttctcctctc atacctagtt ataagctttt 5761 tgatagttat taatatgtac attgctgtca ttctcgagaa ctatagtcag gccaccgagg 5821 atgtgcagga gggtctcacc gacgacgatt acgatatgta ctatgagatc tggcaacagt 5881 tcgatccgga gggcacccag tacatacgat acgaccagct gtccgagttc ctcgacgtgc 5941 tggagccccc gctccagatt cacaagccca acaagtacaa aatcatatcg atggacatac 6001 ccatctgtcg cggtgacctc atgtactgtg tggacatact ggacgcactg accaaagact 6061 ttttcgcgcg caaaggcaat cccattgagg agacgggcga gattggtgag attgccgcca 6121 ggccggacac cgagggctac gagcccgtct cctccaccct ctggcgacag cgggaggagt 6181 actgtgcccg cctcattcaa catgcctggc gcaagcataa aacgcgcgcc gagggcggtg 6241 gtgcaccgtc cgacgcggaa ggcgacggcc ccgaagatgg tgatgcgggt ggcggtggcg 6301 gggcggcgct gatgctgggt gttctggatg ttccagatgc tgctggcgat gcagcaacca 6361 ctggctccca tgacggggca acggcactcg atcccgagac cgatccatcg ggagtaccgg 6421 cggcagcggc ggtggcccca cagccagccg gtgacggcgg cgagggaccg gatggaggag 6481 caacagccga tccgcacgag agcaatgtaa atagtccgac gatggacggc gcgacggcgg 6541 gcagcccggg cgcagggagc gctggcagca ctggccgaca gacggccgtt ctcgtggaga 6601 gcgatgggtt tgtgaccaag aacgggcaca aggttgtaat acactcgcgt tcgccgagca 6661 taacgtcgcg cacggcggat gtctgagcca ggcctcgccc ccccctccaa gatgcacgcg 6721 agtattaggt gcaggtgcag atgcagtgca gtggtggtgc cacaacaaca acaacaacaa 6781 cagcaggtgc cactggtagc tgcaattgca actgcaacag cagcaacagg aagaa