PREDICTED: Drosophila obscura sodium channel protein para
LOCUS XM_041592008 6814 bp mRNA linear INV 14-MAY-2021
(LOC111070739), transcript variant X47, mRNA.
ACCESSION XM_041592008
VERSION XM_041592008.1
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..6814
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..6814
/gene="LOC111070739"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 47 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 5 samples with support for all annotated
introns"
/db_xref="GeneID:111070739"
CDS 237..6665
/gene="LOC111070739"
/codon_start=1
/product="sodium channel protein para isoform X47"
/protein_id="XP_041447942.1"
/db_xref="GeneID:111070739"
/translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK
RAEGEPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLE
DIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIIT
TILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDF
VVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIIL
TMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDG
ISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDL
YQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIR
EAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEK
GNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNIR
RGSRSSHKYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGA
IIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQ
SVGATNGGTTCLDPNHKVEHRDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDV
MVLNDIIEQAAGRHSRASDRGVSVYYFPTEDDDEDGPTLKDKALEALMKGIEVFCVWD
CCWVWLKLQEWISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFF
TATFAIEATMKLCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLR
VFKLAKSWPTLNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRF
PDGDLPRWNFTDFMHSFMIVFRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVV
LNLFLALLLSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKL
TNQISDQPSGKGVCRCISAEHGDNELELGHDEILADGLIKKGIKEATQLEVAIGDGME
FTIHGDMKNNKPKKSKYLNNATDDDTASINSYGSHKNRPFKDESHKGSAETMEGEEKR
DASKEDLGIDEELDEEGELEEGPLDGDIIIHANDEDILDEYPADCCPDSYYKKFPILA
GDDDSPFWQGWGNLRLKTFQLIENKYFETAVITMILMSSLALALEDVHLPQRPILQDI
LYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGI
QAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQ
LFAGKYFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQVATF
KGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDNFNEQ
KKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRPQAIVFEIVTDKKFDIV
IMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSSECLLKIFALRYHYFIEPW
NLFDVVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFA
LAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQM
STSAGWDGVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLLSYLVISFLIVINMYI
AVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEFLDVLEPPLQ
IHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGNPIEETGEIGEIAARPDT
EGYEPVSSTLWRQREEYCARLIQHAWRKHKTRAEGGGAPSDAEGDGPEDGDAGGGGGA
ALMLGVLDVPDAAGDAATTGSHDGATALDPETDPSGVPAAAAVAPQPAGDGGEGPDGG
ATADPHESNVNSPTMDGATAGSPGAGSAGSTGRQTAVLVESDGFVTKNGHKVVIHSRS
PSITSRTADV"
misc_feature 687..1541
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 1896..2453
/gene="LOC111070739"
/note="Cytoplasmic domain of voltage-gated Na+ ion
channel; Region: Na_trans_cytopl; pfam11933"
/db_xref="CDD:463401"
misc_feature 2682..3317
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 3393..4082
/gene="LOC111070739"
/note="Sodium ion transport-associated; Region:
Na_trans_assoc; pfam06512"
/db_xref="CDD:461936"
misc_feature 4092..4907
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 4875..5033
/gene="LOC111070739"
/note="Inactivation gate of the voltage-gated sodium
channel alpha subunits; Region: Na_channel_gate; cd13433"
/db_xref="CDD:240441"
misc_feature 4920..4931
/gene="LOC111070739"
/note="putative hydrophobic latch; other site"
/db_xref="CDD:240441"
misc_feature 5055..5807
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 5838..5981
/gene="LOC111070739"
/note="Voltage-dependent L-type calcium channel,
IQ-associated; Region: GPHH; pfam16905"
/db_xref="CDD:465306"
ORIGIN
1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca
61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg
121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac
181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga
241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg
301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg
361 aaagaaagag agccgaggga gagccgcaat atggtcgcaa gaaaaaacaa aaagaaatcc
421 gatatgatga cgaggacgag gatgaaggtc cacaaccgga tcctacactt gaacagggtg
481 tgccaatacc tgttcgactg cagggcagct tccctccgga attggcctcc actcccctcg
541 aggatatcga tcccttctac agcaatatac tgacattcgt agttgtaagc aaaggaaaag
601 atatttttcg cttttctgca tcaaaagcaa tgtggctgct cgatccattc aatccgatac
661 gtcgtgtggc catttacatt ttagtgcatc cactattttc gttattcatc attaccacaa
721 ttctcgtcaa ctgcatcctg atgataatgc cgacaacgcc cacagttgag tccactgagg
781 tgatattcac cggaatctac acatttgaat cagctgttaa agtgatggca cgaggtttca
841 ttttatgccc gtttacgtat cttagagatg catggaattg gctggacttc gtagtaatag
901 ctttagctta tgtgaccatg ggtatagatt taggtaatct tgcagccttg cgaacgttta
961 gggtgctgcg agcgcttaaa accgtagcca ttgtgccagg cttgaagacc attgtcggtg
1021 cggtcatcga atctgtaaag aatctgcgcg atgtgataat tttgacaatg ttctccctgt
1081 cggtgttcgc gctgatgggg ctgcaaatct acatgggcgt gctaacgcag aagtgcatca
1141 agaagttccc gctggacggc tcctggggca acctgaccga cgagaactgg gcctatcaca
1201 atagcaacaa ctctaattgg tattcggaag acgacggtat atcctttccg ttgtgcggta
1261 atatctctgg agcggggcaa tgtgaagacg attacgtgtg tctgcagggg ttcgggccga
1321 acccgaacta tggctacacc agtttcgatt cgttcggttg ggcgtttctg tccgccttcc
1381 ggctgatgac gcaggacttc tgggaggatc tgtatcagct ggtgttgcgt gccgcaggac
1441 cctggcacat gctgttcttt atagtcatca tcttcctagg ttcattctat cttgtgaatt
1501 tgattttggc cattgttgcc atgtcgtatg acgaattgca aaagaaggcc gaagaagaag
1561 aggctgccga agaggaggcg atacgtgaag ccgaggaagc tgccgccgcc aaagcagcca
1621 agctggagga gcgcgccaat gcgcaggccc aggccgccgc cgatgcagct gccgccgaag
1681 aggcggctct tcatccggag atggccaaga gtccgacgta ttcgtgcatc agctatgagc
1741 tatttgtggg cggcgagaaa ggcaacgatg acaacaacaa ggagaagatg tccatacgca
1801 gcgttgaggt ggagtcggag tcggtgagcg ttatacaaag acaaccagca cctaccacag
1861 cacaccaagc taccaaagtt cgtaaagtga gcacgacatc cttatcctta cctggttcac
1921 cgtttaacat acgcagggga tcacgtagtt ctcacaagta cacgatccgg aatggacgtg
1981 gacgctttgg tatacccggc agcgatcgca agccgttggt attgtcaaca tatcaggatg
2041 ctcagcagca cttgccctat gccgatgatt cgaacgctgt tacgcccatg tccgaggaga
2101 acggtgccat tatagtgccc gtttattatg gaaatctagg ctccaggcat tcatcgtata
2161 cttcgcatca gtccagaata tcgtatacct cacatggcga tctattgggc ggcatggccg
2221 tcatgggcgt cagcacaatg accaaggaga gcaaattgcg aaatcgcaac tcacgcaatc
2281 aatcagtggg cgccaccaat ggcggcacca cctgcctgga ccccaatcac aaggtcgagc
2341 atcgcgactt cgaaatcggt ctggagtgca cggacgaagc tggcaagatt aaacatcatg
2401 acaatccttt tatcgagccc gtccagacac aaacggtagt cgacatgaaa gatgtgatgg
2461 tactgaatga cattatcgaa caggccgctg gtcggcacag tcgggctagt gatcgcggtg
2521 tctccgttta ctatttccca acagaggacg atgatgagga tgggccgaca ttaaaagaca
2581 aggccctcga agcgctaatg aaaggcatcg aagtgttttg tgtgtgggac tgttgctggg
2641 tttggttgaa attgcaggag tggatatcgc tgatcgtctt cgatcccttt gtcgagctct
2701 tcatcacgct gtgcattgtg gtcaacacga tgttcatggc catggaccat cacgacatga
2761 acaaggagat ggaacgcatc cttaagtgcg gaaattattt cttcacggca acattcgcca
2821 ttgaggcaac catgaaactg tgcgccatga gccccaaata ctatttccag gagggctgga
2881 acatctttga cttcatcatt gtggcactct cattgctgga gctgggcctc gagggcgttc
2941 agggcctctc cgtcttgcgt tcgtttcgtt tgctgcgtgt attcaaattg gccaagtcct
3001 ggccaacact taatttactc atttcgatta tgggacgcac catgggcgct ttgggtaatc
3061 tgacatttgt actttgcatt atcatcttca tctttgcggt gatgggaatg caactgttcg
3121 gaaagaatta tcatgataac aaggatcgct tcccggacgg tgacctgccc cgctggaact
3181 tcaccgactt catgcacagc ttcatgatcg tgtttcgggt gctatgcggc gagtggatcg
3241 agtccatgtg ggactgtatg cacgtgggcg atgtatcgtg cattccattc ttcttggcca
3301 ccgttgtcat cggcaattta gtggttctta accttttctt agccctgctt ttgtcaaatt
3361 ttggttcatc tagcttatca gcgccgacag ccgataacga taccaataaa atagccgagg
3421 ccttcaatcg aattgggcga tttaaaagtt gggttaagcg taatattgct gattgtttca
3481 agttaatacg taacaaattg acaaatcaaa taagtgatca accatcaggc aaaggcgttt
3541 gtcgttgtat atctgcagag cacggcgaca acgagctgga gctgggccac gacgagatac
3601 tcgccgacgg gctcatcaag aagggcatca aggaggcgac acagctggag gtggccatcg
3661 gtgatggcat ggagttcacg atacacggcg acatgaagaa caacaagccg aagaaatcca
3721 aatatctaaa taacgcaacg gacgacgaca ctgccagcat taactcatat ggtagccata
3781 agaatcgacc attcaaggat gagagccaca agggcagcgc cgagacgatg gagggcgagg
3841 agaagcggga cgccagcaag gaggatttag gtatcgatga ggagctcgac gaggagggcg
3901 aattggagga gggcccgctc gacggcgata tcatcataca tgccaacgat gaggatatac
3961 tcgatgaata tccagctgat tgctgccccg attcgtacta taagaaattt ccgatcttag
4021 ccggtgatga tgactcgccg ttctggcaag gatggggcaa tttacgactg aaaacttttc
4081 aattaattga aaataaatat tttgaaacag ctgttatcac tatgatttta atgagtagct
4141 tagctttggc attagaagat gtacatctgc cacaaagacc catactgcag gatattttat
4201 actatatgga cagaatattt acggttatat tcttcttgga aatgttaatc aagtggctgg
4261 cgctcggctt caaagtgtac ttcacgaacg cgtggtgctg gctcgatttc gtcattgtca
4321 tggtatcgct tatcaacttc gttgcttcac ttgttggagc tggtggtatt caagccttca
4381 agactatgcg aacgttaaga gcactgagac cactacgtgc catgtcccgt atgcagggca
4441 tgagggtcgt cgttaatgcg ctggtacaag ctataccgtc catcttcaat gtgctattgg
4501 tgtgtctaat attttggcta atttttgcca taatgggtgt acagcttttt gctggaaaat
4561 attttaagtg cgaggacatg aatggcacga agctcagcca cgagatcata ccaaatcgca
4621 atgcctgcga aagcgagaac tacacgtggg tgaattcagc aatgaatttc gatcatgtag
4681 gtaacgcgta tctgtgcctt ttccaagtgg ccaccttcaa aggctggata caaatcatga
4741 acgatgctat cgattcacga gaggtggaca agcagccaat tcgtgaaacg aacatctaca
4801 tgtatttata tttcgtattc ttcatcatat ttggatcatt tttcacactc aatctgttca
4861 ttggtgttat cattgataat tttaatgagc aaaagaaaaa agcaggtgga tcattagaaa
4921 tgttcatgac agaagatcag aaaaagtact ataatgctat gaaaaagatg ggctctaaaa
4981 aaccattaaa agccattcca agaccaaggt ggcgtccaca agcaatagtc tttgaaatag
5041 taaccgataa gaaattcgat atagtcataa tgttattcat tggtctgaac atgttcacca
5101 tgacactcga tcgttacgat gcgtcggaca cgtacaacgc ggtccttgac tatctcaatg
5161 cgatattcgt agttattttc agttccgaat gtctattaaa aatattcgct ttacgatatc
5221 actattttat tgagccatgg aatttatttg atgtagtagt tgtcatttta tccatcttag
5281 gtctcgtact tagcgatatt atcgagaaat acttcgtatc gccgacactg ctccgagtgg
5341 tgcgcgtggc caaagtgggt cgcgtactgc gtctggtgaa gggcgccaag ggtatacgaa
5401 cgctgctgtt cgccctggcc atgtcgctgc cggcgctgtt caacatctgc ctgctgctgt
5461 tcctggtcat gttcatcttc gcgatattcg gcatgtcgtt cttcatgcat gtgaaggaga
5521 agagcggcat caacgacgtc tacaacttca agacgttcgg acagagcatg atcctgctct
5581 ttcagatgtc tacctcagcc ggttgggatg gtgtactcga cgccattatc aatgaggaag
5641 catgcgatcc acccgacaac gacaaaggct atccgggcaa ttgtggttca gcgaccgttg
5701 gaataacgtt tctcctctca tacctagtta taagcttttt gatagttatt aatatgtaca
5761 ttgctgtcat tctcgagaac tatagtcagg ccaccgagga tgtgcaggag ggtctcaccg
5821 acgacgatta cgatatgtac tatgagatct ggcaacagtt cgatccggag ggcacccagt
5881 acatacgata cgaccagctg tccgagttcc tcgacgtgct ggagcccccg ctccagattc
5941 acaagcccaa caagtacaaa atcatatcga tggacatacc catctgtcgc ggtgacctca
6001 tgtactgtgt ggacatactg gacgcactga ccaaagactt tttcgcgcgc aaaggcaatc
6061 ccattgagga gacgggcgag attggtgaga ttgccgccag gccggacacc gagggctacg
6121 agcccgtctc ctccaccctc tggcgacagc gggaggagta ctgtgcccgc ctcattcaac
6181 atgcctggcg caagcataaa acgcgcgccg agggcggtgg tgcaccgtcc gacgcggaag
6241 gcgacggccc cgaagatggt gatgcgggtg gcggtggcgg ggcggcgctg atgctgggtg
6301 ttctggatgt tccagatgct gctggcgatg cagcaaccac tggctcccat gacggggcaa
6361 cggcactcga tcccgagacc gatccatcgg gagtaccggc ggcagcggcg gtggccccac
6421 agccagccgg tgacggcggc gagggaccgg atggaggagc aacagccgat ccgcacgaga
6481 gcaatgtaaa tagtccgacg atggacggcg cgacggcggg cagcccgggc gcagggagcg
6541 ctggcagcac tggccgacag acggccgttc tcgtggagag cgatgggttt gtgaccaaga
6601 acgggcacaa ggttgtaata cactcgcgtt cgccgagcat aacgtcgcgc acggcggatg
6661 tctgagccag gcctcgcccc cccctccaag atgcacgcga gtattaggtg caggtgcaga
6721 tgcagtgcag tggtggtgcc acaacaacaa caacaacaac agcaggtgcc actggtagct
6781 gcaattgcaa ctgcaacagc agcaacagga agaa