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LOCUS XM_041592008 6814 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X47, mRNA. ACCESSION XM_041592008 VERSION XM_041592008.1 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6814 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6814 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 47 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6665 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X47" /protein_id="XP_041447942.1" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLE DIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIIT TILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDF VVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIIL TMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDG ISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDL YQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIR EAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEK GNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNIR RGSRSSHKYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGA IIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQ SVGATNGGTTCLDPNHKVEHRDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDV MVLNDIIEQAAGRHSRASDRGVSVYYFPTEDDDEDGPTLKDKALEALMKGIEVFCVWD CCWVWLKLQEWISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFF TATFAIEATMKLCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLR VFKLAKSWPTLNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRF PDGDLPRWNFTDFMHSFMIVFRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVV LNLFLALLLSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKL TNQISDQPSGKGVCRCISAEHGDNELELGHDEILADGLIKKGIKEATQLEVAIGDGME FTIHGDMKNNKPKKSKYLNNATDDDTASINSYGSHKNRPFKDESHKGSAETMEGEEKR DASKEDLGIDEELDEEGELEEGPLDGDIIIHANDEDILDEYPADCCPDSYYKKFPILA GDDDSPFWQGWGNLRLKTFQLIENKYFETAVITMILMSSLALALEDVHLPQRPILQDI LYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGI QAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQ LFAGKYFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQVATF KGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDNFNEQ KKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRPQAIVFEIVTDKKFDIV IMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSSECLLKIFALRYHYFIEPW NLFDVVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFA LAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQM STSAGWDGVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLLSYLVISFLIVINMYI AVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEFLDVLEPPLQ IHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGNPIEETGEIGEIAARPDT EGYEPVSSTLWRQREEYCARLIQHAWRKHKTRAEGGGAPSDAEGDGPEDGDAGGGGGA ALMLGVLDVPDAAGDAATTGSHDGATALDPETDPSGVPAAAAVAPQPAGDGGEGPDGG ATADPHESNVNSPTMDGATAGSPGAGSAGSTGRQTAVLVESDGFVTKNGHKVVIHSRS PSITSRTADV" misc_feature 687..1541 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1896..2453 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2682..3317 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3393..4082 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4092..4907 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4875..5033 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 4920..4931 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 5055..5807 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5838..5981 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gagccgcaat atggtcgcaa gaaaaaacaa aaagaaatcc 421 gatatgatga cgaggacgag gatgaaggtc cacaaccgga tcctacactt gaacagggtg 481 tgccaatacc tgttcgactg cagggcagct tccctccgga attggcctcc actcccctcg 541 aggatatcga tcccttctac agcaatatac tgacattcgt agttgtaagc aaaggaaaag 601 atatttttcg cttttctgca tcaaaagcaa tgtggctgct cgatccattc aatccgatac 661 gtcgtgtggc catttacatt ttagtgcatc cactattttc gttattcatc attaccacaa 721 ttctcgtcaa ctgcatcctg atgataatgc cgacaacgcc cacagttgag tccactgagg 781 tgatattcac cggaatctac acatttgaat cagctgttaa agtgatggca cgaggtttca 841 ttttatgccc gtttacgtat cttagagatg catggaattg gctggacttc gtagtaatag 901 ctttagctta tgtgaccatg ggtatagatt taggtaatct tgcagccttg cgaacgttta 961 gggtgctgcg agcgcttaaa accgtagcca ttgtgccagg cttgaagacc attgtcggtg 1021 cggtcatcga atctgtaaag aatctgcgcg atgtgataat tttgacaatg ttctccctgt 1081 cggtgttcgc gctgatgggg ctgcaaatct acatgggcgt gctaacgcag aagtgcatca 1141 agaagttccc gctggacggc tcctggggca acctgaccga cgagaactgg gcctatcaca 1201 atagcaacaa ctctaattgg tattcggaag acgacggtat atcctttccg ttgtgcggta 1261 atatctctgg agcggggcaa tgtgaagacg attacgtgtg tctgcagggg ttcgggccga 1321 acccgaacta tggctacacc agtttcgatt cgttcggttg ggcgtttctg tccgccttcc 1381 ggctgatgac gcaggacttc tgggaggatc tgtatcagct ggtgttgcgt gccgcaggac 1441 cctggcacat gctgttcttt atagtcatca tcttcctagg ttcattctat cttgtgaatt 1501 tgattttggc cattgttgcc atgtcgtatg acgaattgca aaagaaggcc gaagaagaag 1561 aggctgccga agaggaggcg atacgtgaag ccgaggaagc tgccgccgcc aaagcagcca 1621 agctggagga gcgcgccaat gcgcaggccc aggccgccgc cgatgcagct gccgccgaag 1681 aggcggctct tcatccggag atggccaaga gtccgacgta ttcgtgcatc agctatgagc 1741 tatttgtggg cggcgagaaa ggcaacgatg acaacaacaa ggagaagatg tccatacgca 1801 gcgttgaggt ggagtcggag tcggtgagcg ttatacaaag acaaccagca cctaccacag 1861 cacaccaagc taccaaagtt cgtaaagtga gcacgacatc cttatcctta cctggttcac 1921 cgtttaacat acgcagggga tcacgtagtt ctcacaagta cacgatccgg aatggacgtg 1981 gacgctttgg tatacccggc agcgatcgca agccgttggt attgtcaaca tatcaggatg 2041 ctcagcagca cttgccctat gccgatgatt cgaacgctgt tacgcccatg tccgaggaga 2101 acggtgccat tatagtgccc gtttattatg gaaatctagg ctccaggcat tcatcgtata 2161 cttcgcatca gtccagaata tcgtatacct cacatggcga tctattgggc ggcatggccg 2221 tcatgggcgt cagcacaatg accaaggaga gcaaattgcg aaatcgcaac tcacgcaatc 2281 aatcagtggg cgccaccaat ggcggcacca cctgcctgga ccccaatcac aaggtcgagc 2341 atcgcgactt cgaaatcggt ctggagtgca cggacgaagc tggcaagatt aaacatcatg 2401 acaatccttt tatcgagccc gtccagacac aaacggtagt cgacatgaaa gatgtgatgg 2461 tactgaatga cattatcgaa caggccgctg gtcggcacag tcgggctagt gatcgcggtg 2521 tctccgttta ctatttccca acagaggacg atgatgagga tgggccgaca ttaaaagaca 2581 aggccctcga agcgctaatg aaaggcatcg aagtgttttg tgtgtgggac tgttgctggg 2641 tttggttgaa attgcaggag tggatatcgc tgatcgtctt cgatcccttt gtcgagctct 2701 tcatcacgct gtgcattgtg gtcaacacga tgttcatggc catggaccat cacgacatga 2761 acaaggagat ggaacgcatc cttaagtgcg gaaattattt cttcacggca acattcgcca 2821 ttgaggcaac catgaaactg tgcgccatga gccccaaata ctatttccag gagggctgga 2881 acatctttga cttcatcatt gtggcactct cattgctgga gctgggcctc gagggcgttc 2941 agggcctctc cgtcttgcgt tcgtttcgtt tgctgcgtgt attcaaattg gccaagtcct 3001 ggccaacact taatttactc atttcgatta tgggacgcac catgggcgct ttgggtaatc 3061 tgacatttgt actttgcatt atcatcttca tctttgcggt gatgggaatg caactgttcg 3121 gaaagaatta tcatgataac aaggatcgct tcccggacgg tgacctgccc cgctggaact 3181 tcaccgactt catgcacagc ttcatgatcg tgtttcgggt gctatgcggc gagtggatcg 3241 agtccatgtg ggactgtatg cacgtgggcg atgtatcgtg cattccattc ttcttggcca 3301 ccgttgtcat cggcaattta gtggttctta accttttctt agccctgctt ttgtcaaatt 3361 ttggttcatc tagcttatca gcgccgacag ccgataacga taccaataaa atagccgagg 3421 ccttcaatcg aattgggcga tttaaaagtt gggttaagcg taatattgct gattgtttca 3481 agttaatacg taacaaattg acaaatcaaa taagtgatca accatcaggc aaaggcgttt 3541 gtcgttgtat atctgcagag cacggcgaca acgagctgga gctgggccac gacgagatac 3601 tcgccgacgg gctcatcaag aagggcatca aggaggcgac acagctggag gtggccatcg 3661 gtgatggcat ggagttcacg atacacggcg acatgaagaa caacaagccg aagaaatcca 3721 aatatctaaa taacgcaacg gacgacgaca ctgccagcat taactcatat ggtagccata 3781 agaatcgacc attcaaggat gagagccaca agggcagcgc cgagacgatg gagggcgagg 3841 agaagcggga cgccagcaag gaggatttag gtatcgatga ggagctcgac gaggagggcg 3901 aattggagga gggcccgctc gacggcgata tcatcataca tgccaacgat gaggatatac 3961 tcgatgaata tccagctgat tgctgccccg attcgtacta taagaaattt ccgatcttag 4021 ccggtgatga tgactcgccg ttctggcaag gatggggcaa tttacgactg aaaacttttc 4081 aattaattga aaataaatat tttgaaacag ctgttatcac tatgatttta atgagtagct 4141 tagctttggc attagaagat gtacatctgc cacaaagacc catactgcag gatattttat 4201 actatatgga cagaatattt acggttatat tcttcttgga aatgttaatc aagtggctgg 4261 cgctcggctt caaagtgtac ttcacgaacg cgtggtgctg gctcgatttc gtcattgtca 4321 tggtatcgct tatcaacttc gttgcttcac ttgttggagc tggtggtatt caagccttca 4381 agactatgcg aacgttaaga gcactgagac cactacgtgc catgtcccgt atgcagggca 4441 tgagggtcgt cgttaatgcg ctggtacaag ctataccgtc catcttcaat gtgctattgg 4501 tgtgtctaat attttggcta atttttgcca taatgggtgt acagcttttt gctggaaaat 4561 attttaagtg cgaggacatg aatggcacga agctcagcca cgagatcata ccaaatcgca 4621 atgcctgcga aagcgagaac tacacgtggg tgaattcagc aatgaatttc gatcatgtag 4681 gtaacgcgta tctgtgcctt ttccaagtgg ccaccttcaa aggctggata caaatcatga 4741 acgatgctat cgattcacga gaggtggaca agcagccaat tcgtgaaacg aacatctaca 4801 tgtatttata tttcgtattc ttcatcatat ttggatcatt tttcacactc aatctgttca 4861 ttggtgttat cattgataat tttaatgagc aaaagaaaaa agcaggtgga tcattagaaa 4921 tgttcatgac agaagatcag aaaaagtact ataatgctat gaaaaagatg ggctctaaaa 4981 aaccattaaa agccattcca agaccaaggt ggcgtccaca agcaatagtc tttgaaatag 5041 taaccgataa gaaattcgat atagtcataa tgttattcat tggtctgaac atgttcacca 5101 tgacactcga tcgttacgat gcgtcggaca cgtacaacgc ggtccttgac tatctcaatg 5161 cgatattcgt agttattttc agttccgaat gtctattaaa aatattcgct ttacgatatc 5221 actattttat tgagccatgg aatttatttg atgtagtagt tgtcatttta tccatcttag 5281 gtctcgtact tagcgatatt atcgagaaat acttcgtatc gccgacactg ctccgagtgg 5341 tgcgcgtggc caaagtgggt cgcgtactgc gtctggtgaa gggcgccaag ggtatacgaa 5401 cgctgctgtt cgccctggcc atgtcgctgc cggcgctgtt caacatctgc ctgctgctgt 5461 tcctggtcat gttcatcttc gcgatattcg gcatgtcgtt cttcatgcat gtgaaggaga 5521 agagcggcat caacgacgtc tacaacttca agacgttcgg acagagcatg atcctgctct 5581 ttcagatgtc tacctcagcc ggttgggatg gtgtactcga cgccattatc aatgaggaag 5641 catgcgatcc acccgacaac gacaaaggct atccgggcaa ttgtggttca gcgaccgttg 5701 gaataacgtt tctcctctca tacctagtta taagcttttt gatagttatt aatatgtaca 5761 ttgctgtcat tctcgagaac tatagtcagg ccaccgagga tgtgcaggag ggtctcaccg 5821 acgacgatta cgatatgtac tatgagatct ggcaacagtt cgatccggag ggcacccagt 5881 acatacgata cgaccagctg tccgagttcc tcgacgtgct ggagcccccg ctccagattc 5941 acaagcccaa caagtacaaa atcatatcga tggacatacc catctgtcgc ggtgacctca 6001 tgtactgtgt ggacatactg gacgcactga ccaaagactt tttcgcgcgc aaaggcaatc 6061 ccattgagga gacgggcgag attggtgaga ttgccgccag gccggacacc gagggctacg 6121 agcccgtctc ctccaccctc tggcgacagc gggaggagta ctgtgcccgc ctcattcaac 6181 atgcctggcg caagcataaa acgcgcgccg agggcggtgg tgcaccgtcc gacgcggaag 6241 gcgacggccc cgaagatggt gatgcgggtg gcggtggcgg ggcggcgctg atgctgggtg 6301 ttctggatgt tccagatgct gctggcgatg cagcaaccac tggctcccat gacggggcaa 6361 cggcactcga tcccgagacc gatccatcgg gagtaccggc ggcagcggcg gtggccccac 6421 agccagccgg tgacggcggc gagggaccgg atggaggagc aacagccgat ccgcacgaga 6481 gcaatgtaaa tagtccgacg atggacggcg cgacggcggg cagcccgggc gcagggagcg 6541 ctggcagcac tggccgacag acggccgttc tcgtggagag cgatgggttt gtgaccaaga 6601 acgggcacaa ggttgtaata cactcgcgtt cgccgagcat aacgtcgcgc acggcggatg 6661 tctgagccag gcctcgcccc cccctccaag atgcacgcga gtattaggtg caggtgcaga 6721 tgcagtgcag tggtggtgcc acaacaacaa caacaacaac agcaggtgcc actggtagct 6781 gcaattgcaa ctgcaacagc agcaacagga agaa