PREDICTED: Drosophila obscura sodium channel protein para
LOCUS XM_041592007 6889 bp mRNA linear INV 14-MAY-2021
(LOC111070739), transcript variant X46, mRNA.
ACCESSION XM_041592007
VERSION XM_041592007.1
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..6889
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..6889
/gene="LOC111070739"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 46 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 5 samples with support for all annotated
introns"
/db_xref="GeneID:111070739"
CDS 237..6740
/gene="LOC111070739"
/codon_start=1
/product="sodium channel protein para isoform X46"
/protein_id="XP_041447941.1"
/db_xref="GeneID:111070739"
/translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK
RAEGEPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLE
DIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIIT
TILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDF
VVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIIL
TMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDG
ISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDL
YQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIR
EAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEK
GNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNIR
RGSRSSHKYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGA
IIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQ
SVGATNGGTTCLDPNHKVEHRDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDV
MVLNDIIEQAAGRHSRASDRGVSVYYFPTEDDDEDGPTLKDKALEALMKGIEVFCVWD
CCWVWLKLQEWISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFF
TATFAIEATMKLCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLR
VFKLAKSWPTLNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRF
PDGDLPRWNFTDFMHSFMIVFRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVV
LNLFLALLLSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKL
TNQISDQPSGKGVCRCISAEHGDNELELGHDEILADGLIKKGIKEATQLEVAIGDGME
FTIHGDMKNNKPKKSKYLNNATMIGNSINHQDNRLEHELNHRGLSLQDDDTASINSYG
SHKNRPFKDESHKGSAETMEGEEKRDASKEDLGIDEELDEEGELEEGPLDGDIIIHAN
DEDILDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAVIT
MILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAW
CWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQ
AIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESENY
TWVNSAMNFDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFV
FFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLK
AIPRPRWRPQAIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAI
FVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLLRV
VRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHV
KEKSGINDVYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGNCG
SATVGITFLLSYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQF
DPEGTQYIRYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTK
DFFARKGNPIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKTRA
EGGGAPSDAEGDGPEDGDAGGGGGAALMLGVLDVPDAAGDAATTGSHDGATALDPETD
PSGVPAAAAVAPQPAGDGGEGPDGGATADPHESNVNSPTMDGATAGSPGAGSAGSTGR
QTAVLVESDGFVTKNGHKVVIHSRSPSITSRTADV"
misc_feature 687..1541
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 1896..2453
/gene="LOC111070739"
/note="Cytoplasmic domain of voltage-gated Na+ ion
channel; Region: Na_trans_cytopl; pfam11933"
/db_xref="CDD:463401"
misc_feature 2682..3317
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 3393..4157
/gene="LOC111070739"
/note="Sodium ion transport-associated; Region:
Na_trans_assoc; pfam06512"
/db_xref="CDD:461936"
misc_feature 4167..4982
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 4950..5108
/gene="LOC111070739"
/note="Inactivation gate of the voltage-gated sodium
channel alpha subunits; Region: Na_channel_gate; cd13433"
/db_xref="CDD:240441"
misc_feature 4995..5006
/gene="LOC111070739"
/note="putative hydrophobic latch; other site"
/db_xref="CDD:240441"
misc_feature 5130..5882
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 5913..6056
/gene="LOC111070739"
/note="Voltage-dependent L-type calcium channel,
IQ-associated; Region: GPHH; pfam16905"
/db_xref="CDD:465306"
ORIGIN
1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca
61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg
121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac
181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga
241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg
301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg
361 aaagaaagag agccgaggga gagccgcaat atggtcgcaa gaaaaaacaa aaagaaatcc
421 gatatgatga cgaggacgag gatgaaggtc cacaaccgga tcctacactt gaacagggtg
481 tgccaatacc tgttcgactg cagggcagct tccctccgga attggcctcc actcccctcg
541 aggatatcga tcccttctac agcaatatac tgacattcgt agttgtaagc aaaggaaaag
601 atatttttcg cttttctgca tcaaaagcaa tgtggctgct cgatccattc aatccgatac
661 gtcgtgtggc catttacatt ttagtgcatc cactattttc gttattcatc attaccacaa
721 ttctcgtcaa ctgcatcctg atgataatgc cgacaacgcc cacagttgag tccactgagg
781 tgatattcac cggaatctac acatttgaat cagctgttaa agtgatggca cgaggtttca
841 ttttatgccc gtttacgtat cttagagatg catggaattg gctggacttc gtagtaatag
901 ctttagctta tgtgaccatg ggtatagatt taggtaatct tgcagccttg cgaacgttta
961 gggtgctgcg agcgcttaaa accgtagcca ttgtgccagg cttgaagacc attgtcggtg
1021 cggtcatcga atctgtaaag aatctgcgcg atgtgataat tttgacaatg ttctccctgt
1081 cggtgttcgc gctgatgggg ctgcaaatct acatgggcgt gctaacgcag aagtgcatca
1141 agaagttccc gctggacggc tcctggggca acctgaccga cgagaactgg gcctatcaca
1201 atagcaacaa ctctaattgg tattcggaag acgacggtat atcctttccg ttgtgcggta
1261 atatctctgg agcggggcaa tgtgaagacg attacgtgtg tctgcagggg ttcgggccga
1321 acccgaacta tggctacacc agtttcgatt cgttcggttg ggcgtttctg tccgccttcc
1381 ggctgatgac gcaggacttc tgggaggatc tgtatcagct ggtgttgcgt gccgcaggac
1441 cctggcacat gctgttcttt atagtcatca tcttcctagg ttcattctat cttgtgaatt
1501 tgattttggc cattgttgcc atgtcgtatg acgaattgca aaagaaggcc gaagaagaag
1561 aggctgccga agaggaggcg atacgtgaag ccgaggaagc tgccgccgcc aaagcagcca
1621 agctggagga gcgcgccaat gcgcaggccc aggccgccgc cgatgcagct gccgccgaag
1681 aggcggctct tcatccggag atggccaaga gtccgacgta ttcgtgcatc agctatgagc
1741 tatttgtggg cggcgagaaa ggcaacgatg acaacaacaa ggagaagatg tccatacgca
1801 gcgttgaggt ggagtcggag tcggtgagcg ttatacaaag acaaccagca cctaccacag
1861 cacaccaagc taccaaagtt cgtaaagtga gcacgacatc cttatcctta cctggttcac
1921 cgtttaacat acgcagggga tcacgtagtt ctcacaagta cacgatccgg aatggacgtg
1981 gacgctttgg tatacccggc agcgatcgca agccgttggt attgtcaaca tatcaggatg
2041 ctcagcagca cttgccctat gccgatgatt cgaacgctgt tacgcccatg tccgaggaga
2101 acggtgccat tatagtgccc gtttattatg gaaatctagg ctccaggcat tcatcgtata
2161 cttcgcatca gtccagaata tcgtatacct cacatggcga tctattgggc ggcatggccg
2221 tcatgggcgt cagcacaatg accaaggaga gcaaattgcg aaatcgcaac tcacgcaatc
2281 aatcagtggg cgccaccaat ggcggcacca cctgcctgga ccccaatcac aaggtcgagc
2341 atcgcgactt cgaaatcggt ctggagtgca cggacgaagc tggcaagatt aaacatcatg
2401 acaatccttt tatcgagccc gtccagacac aaacggtagt cgacatgaaa gatgtgatgg
2461 tactgaatga cattatcgaa caggccgctg gtcggcacag tcgggctagt gatcgcggtg
2521 tctccgttta ctatttccca acagaggacg atgatgagga tgggccgaca ttaaaagaca
2581 aggccctcga agcgctaatg aaaggcatcg aagtgttttg tgtgtgggac tgttgctggg
2641 tttggttgaa attgcaggag tggatatcgc tgatcgtctt cgatcccttt gtcgagctct
2701 tcatcacgct gtgcattgtg gtcaacacga tgttcatggc catggaccat cacgacatga
2761 acaaggagat ggaacgcatc cttaagtgcg gaaattattt cttcacggca acattcgcca
2821 ttgaggcaac catgaaactg tgcgccatga gccccaaata ctatttccag gagggctgga
2881 acatctttga cttcatcatt gtggcactct cattgctgga gctgggcctc gagggcgttc
2941 agggcctctc cgtcttgcgt tcgtttcgtt tgctgcgtgt attcaaattg gccaagtcct
3001 ggccaacact taatttactc atttcgatta tgggacgcac catgggcgct ttgggtaatc
3061 tgacatttgt actttgcatt atcatcttca tctttgcggt gatgggaatg caactgttcg
3121 gaaagaatta tcatgataac aaggatcgct tcccggacgg tgacctgccc cgctggaact
3181 tcaccgactt catgcacagc ttcatgatcg tgtttcgggt gctatgcggc gagtggatcg
3241 agtccatgtg ggactgtatg cacgtgggcg atgtatcgtg cattccattc ttcttggcca
3301 ccgttgtcat cggcaattta gtggttctta accttttctt agccctgctt ttgtcaaatt
3361 ttggttcatc tagcttatca gcgccgacag ccgataacga taccaataaa atagccgagg
3421 ccttcaatcg aattgggcga tttaaaagtt gggttaagcg taatattgct gattgtttca
3481 agttaatacg taacaaattg acaaatcaaa taagtgatca accatcaggc aaaggcgttt
3541 gtcgttgtat atctgcagag cacggcgaca acgagctgga gctgggccac gacgagatac
3601 tcgccgacgg gctcatcaag aagggcatca aggaggcgac acagctggag gtggccatcg
3661 gtgatggcat ggagttcacg atacacggcg acatgaagaa caacaagccg aagaaatcca
3721 aatatctaaa taacgcaacg atgattggca actcaattaa ccaccaagac aatagactgg
3781 aacacgagct aaaccataga ggtttgtcct tacaggacga cgacactgcc agcattaact
3841 catatggtag ccataagaat cgaccattca aggatgagag ccacaagggc agcgccgaga
3901 cgatggaggg cgaggagaag cgggacgcca gcaaggagga tttaggtatc gatgaggagc
3961 tcgacgagga gggcgaattg gaggagggcc cgctcgacgg cgatatcatc atacatgcca
4021 acgatgagga tatactcgat gaatatccag ctgattgctg ccccgattcg tactataaga
4081 aatttccgat cttagccggt gatgatgact cgccgttctg gcaaggatgg ggcaatttac
4141 gactgaaaac ttttcaatta attgaaaata aatattttga aacagctgtt atcactatga
4201 ttttaatgag tagcttagct ttggcattag aagatgtaca tctgccacaa agacccatac
4261 tgcaggatat tttatactat atggacagaa tatttacggt tatattcttc ttggaaatgt
4321 taatcaagtg gctggcgctc ggcttcaaag tgtacttcac gaacgcgtgg tgctggctcg
4381 atttcgtcat tgtcatggta tcgcttatca acttcgttgc ttcacttgtt ggagctggtg
4441 gtattcaagc cttcaagact atgcgaacgt taagagcact gagaccacta cgtgccatgt
4501 cccgtatgca gggcatgagg gtcgtcgtta atgcgctggt acaagctata ccgtccatct
4561 tcaatgtgct attggtgtgt ctaatatttt ggctaatttt tgccataatg ggtgtacagc
4621 tttttgctgg aaaatatttt aagtgcgagg acatgaatgg cacgaagctc agccacgaga
4681 tcataccaaa tcgcaatgcc tgcgaaagcg agaactacac gtgggtgaat tcagcaatga
4741 atttcgatca tgtaggtaac gcgtatctgt gccttttcca agtggccacc ttcaaaggct
4801 ggatacaaat catgaacgat gctatcgatt cacgagaggt ggacaagcag ccaattcgtg
4861 aaacgaacat ctacatgtat ttatatttcg tattcttcat catatttgga tcatttttca
4921 cactcaatct gttcattggt gttatcattg ataattttaa tgagcaaaag aaaaaagcag
4981 gtggatcatt agaaatgttc atgacagaag atcagaaaaa gtactataat gctatgaaaa
5041 agatgggctc taaaaaacca ttaaaagcca ttccaagacc aaggtggcgt ccacaagcaa
5101 tagtctttga aatagtaacc gataagaaat tcgatatagt cataatgtta ttcattggtc
5161 tgaacatgtt caccatgaca ctcgatcgtt acgatgcgtc ggacacgtac aacgcggtcc
5221 ttgactatct caatgcgata ttcgtagtta ttttcagttc cgaatgtcta ttaaaaatat
5281 tcgctttacg atatcactat tttattgagc catggaattt atttgatgta gtagttgtca
5341 ttttatccat cttaggtctc gtacttagcg atattatcga gaaatacttc gtatcgccga
5401 cactgctccg agtggtgcgc gtggccaaag tgggtcgcgt actgcgtctg gtgaagggcg
5461 ccaagggtat acgaacgctg ctgttcgccc tggccatgtc gctgccggcg ctgttcaaca
5521 tctgcctgct gctgttcctg gtcatgttca tcttcgcgat attcggcatg tcgttcttca
5581 tgcatgtgaa ggagaagagc ggcatcaacg acgtctacaa cttcaagacg ttcggacaga
5641 gcatgatcct gctctttcag atgtctacct cagccggttg ggatggtgta ctcgacgcca
5701 ttatcaatga ggaagcatgc gatccacccg acaacgacaa aggctatccg ggcaattgtg
5761 gttcagcgac cgttggaata acgtttctcc tctcatacct agttataagc tttttgatag
5821 ttattaatat gtacattgct gtcattctcg agaactatag tcaggccacc gaggatgtgc
5881 aggagggtct caccgacgac gattacgata tgtactatga gatctggcaa cagttcgatc
5941 cggagggcac ccagtacata cgatacgacc agctgtccga gttcctcgac gtgctggagc
6001 ccccgctcca gattcacaag cccaacaagt acaaaatcat atcgatggac atacccatct
6061 gtcgcggtga cctcatgtac tgtgtggaca tactggacgc actgaccaaa gactttttcg
6121 cgcgcaaagg caatcccatt gaggagacgg gcgagattgg tgagattgcc gccaggccgg
6181 acaccgaggg ctacgagccc gtctcctcca ccctctggcg acagcgggag gagtactgtg
6241 cccgcctcat tcaacatgcc tggcgcaagc ataaaacgcg cgccgagggc ggtggtgcac
6301 cgtccgacgc ggaaggcgac ggccccgaag atggtgatgc gggtggcggt ggcggggcgg
6361 cgctgatgct gggtgttctg gatgttccag atgctgctgg cgatgcagca accactggct
6421 cccatgacgg ggcaacggca ctcgatcccg agaccgatcc atcgggagta ccggcggcag
6481 cggcggtggc cccacagcca gccggtgacg gcggcgaggg accggatgga ggagcaacag
6541 ccgatccgca cgagagcaat gtaaatagtc cgacgatgga cggcgcgacg gcgggcagcc
6601 cgggcgcagg gagcgctggc agcactggcc gacagacggc cgttctcgtg gagagcgatg
6661 ggtttgtgac caagaacggg cacaaggttg taatacactc gcgttcgccg agcataacgt
6721 cgcgcacggc ggatgtctga gccaggcctc gcccccccct ccaagatgca cgcgagtatt
6781 aggtgcaggt gcagatgcag tgcagtggtg gtgccacaac aacaacaaca acaacagcag
6841 gtgccactgg tagctgcaat tgcaactgca acagcagcaa caggaagaa