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LOCUS XM_041592007 6889 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X46, mRNA. ACCESSION XM_041592007 VERSION XM_041592007.1 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6889 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6889 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 46 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6740 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X46" /protein_id="XP_041447941.1" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLE DIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIIT TILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDF VVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIIL TMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDG ISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDL YQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIR EAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEK GNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNIR RGSRSSHKYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGA IIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQ SVGATNGGTTCLDPNHKVEHRDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDV MVLNDIIEQAAGRHSRASDRGVSVYYFPTEDDDEDGPTLKDKALEALMKGIEVFCVWD CCWVWLKLQEWISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFF TATFAIEATMKLCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLR VFKLAKSWPTLNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRF PDGDLPRWNFTDFMHSFMIVFRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVV LNLFLALLLSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKL TNQISDQPSGKGVCRCISAEHGDNELELGHDEILADGLIKKGIKEATQLEVAIGDGME FTIHGDMKNNKPKKSKYLNNATMIGNSINHQDNRLEHELNHRGLSLQDDDTASINSYG SHKNRPFKDESHKGSAETMEGEEKRDASKEDLGIDEELDEEGELEEGPLDGDIIIHAN DEDILDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAVIT MILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAW CWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQ AIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESENY TWVNSAMNFDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFV FFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLK AIPRPRWRPQAIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAI FVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLLRV VRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHV KEKSGINDVYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGNCG SATVGITFLLSYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQF DPEGTQYIRYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTK DFFARKGNPIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKTRA EGGGAPSDAEGDGPEDGDAGGGGGAALMLGVLDVPDAAGDAATTGSHDGATALDPETD PSGVPAAAAVAPQPAGDGGEGPDGGATADPHESNVNSPTMDGATAGSPGAGSAGSTGR QTAVLVESDGFVTKNGHKVVIHSRSPSITSRTADV" misc_feature 687..1541 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1896..2453 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2682..3317 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3393..4157 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4167..4982 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4950..5108 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 4995..5006 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 5130..5882 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5913..6056 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gagccgcaat atggtcgcaa gaaaaaacaa aaagaaatcc 421 gatatgatga cgaggacgag gatgaaggtc cacaaccgga tcctacactt gaacagggtg 481 tgccaatacc tgttcgactg cagggcagct tccctccgga attggcctcc actcccctcg 541 aggatatcga tcccttctac agcaatatac tgacattcgt agttgtaagc aaaggaaaag 601 atatttttcg cttttctgca tcaaaagcaa tgtggctgct cgatccattc aatccgatac 661 gtcgtgtggc catttacatt ttagtgcatc cactattttc gttattcatc attaccacaa 721 ttctcgtcaa ctgcatcctg atgataatgc cgacaacgcc cacagttgag tccactgagg 781 tgatattcac cggaatctac acatttgaat cagctgttaa agtgatggca cgaggtttca 841 ttttatgccc gtttacgtat cttagagatg catggaattg gctggacttc gtagtaatag 901 ctttagctta tgtgaccatg ggtatagatt taggtaatct tgcagccttg cgaacgttta 961 gggtgctgcg agcgcttaaa accgtagcca ttgtgccagg cttgaagacc attgtcggtg 1021 cggtcatcga atctgtaaag aatctgcgcg atgtgataat tttgacaatg ttctccctgt 1081 cggtgttcgc gctgatgggg ctgcaaatct acatgggcgt gctaacgcag aagtgcatca 1141 agaagttccc gctggacggc tcctggggca acctgaccga cgagaactgg gcctatcaca 1201 atagcaacaa ctctaattgg tattcggaag acgacggtat atcctttccg ttgtgcggta 1261 atatctctgg agcggggcaa tgtgaagacg attacgtgtg tctgcagggg ttcgggccga 1321 acccgaacta tggctacacc agtttcgatt cgttcggttg ggcgtttctg tccgccttcc 1381 ggctgatgac gcaggacttc tgggaggatc tgtatcagct ggtgttgcgt gccgcaggac 1441 cctggcacat gctgttcttt atagtcatca tcttcctagg ttcattctat cttgtgaatt 1501 tgattttggc cattgttgcc atgtcgtatg acgaattgca aaagaaggcc gaagaagaag 1561 aggctgccga agaggaggcg atacgtgaag ccgaggaagc tgccgccgcc aaagcagcca 1621 agctggagga gcgcgccaat gcgcaggccc aggccgccgc cgatgcagct gccgccgaag 1681 aggcggctct tcatccggag atggccaaga gtccgacgta ttcgtgcatc agctatgagc 1741 tatttgtggg cggcgagaaa ggcaacgatg acaacaacaa ggagaagatg tccatacgca 1801 gcgttgaggt ggagtcggag tcggtgagcg ttatacaaag acaaccagca cctaccacag 1861 cacaccaagc taccaaagtt cgtaaagtga gcacgacatc cttatcctta cctggttcac 1921 cgtttaacat acgcagggga tcacgtagtt ctcacaagta cacgatccgg aatggacgtg 1981 gacgctttgg tatacccggc agcgatcgca agccgttggt attgtcaaca tatcaggatg 2041 ctcagcagca cttgccctat gccgatgatt cgaacgctgt tacgcccatg tccgaggaga 2101 acggtgccat tatagtgccc gtttattatg gaaatctagg ctccaggcat tcatcgtata 2161 cttcgcatca gtccagaata tcgtatacct cacatggcga tctattgggc ggcatggccg 2221 tcatgggcgt cagcacaatg accaaggaga gcaaattgcg aaatcgcaac tcacgcaatc 2281 aatcagtggg cgccaccaat ggcggcacca cctgcctgga ccccaatcac aaggtcgagc 2341 atcgcgactt cgaaatcggt ctggagtgca cggacgaagc tggcaagatt aaacatcatg 2401 acaatccttt tatcgagccc gtccagacac aaacggtagt cgacatgaaa gatgtgatgg 2461 tactgaatga cattatcgaa caggccgctg gtcggcacag tcgggctagt gatcgcggtg 2521 tctccgttta ctatttccca acagaggacg atgatgagga tgggccgaca ttaaaagaca 2581 aggccctcga agcgctaatg aaaggcatcg aagtgttttg tgtgtgggac tgttgctggg 2641 tttggttgaa attgcaggag tggatatcgc tgatcgtctt cgatcccttt gtcgagctct 2701 tcatcacgct gtgcattgtg gtcaacacga tgttcatggc catggaccat cacgacatga 2761 acaaggagat ggaacgcatc cttaagtgcg gaaattattt cttcacggca acattcgcca 2821 ttgaggcaac catgaaactg tgcgccatga gccccaaata ctatttccag gagggctgga 2881 acatctttga cttcatcatt gtggcactct cattgctgga gctgggcctc gagggcgttc 2941 agggcctctc cgtcttgcgt tcgtttcgtt tgctgcgtgt attcaaattg gccaagtcct 3001 ggccaacact taatttactc atttcgatta tgggacgcac catgggcgct ttgggtaatc 3061 tgacatttgt actttgcatt atcatcttca tctttgcggt gatgggaatg caactgttcg 3121 gaaagaatta tcatgataac aaggatcgct tcccggacgg tgacctgccc cgctggaact 3181 tcaccgactt catgcacagc ttcatgatcg tgtttcgggt gctatgcggc gagtggatcg 3241 agtccatgtg ggactgtatg cacgtgggcg atgtatcgtg cattccattc ttcttggcca 3301 ccgttgtcat cggcaattta gtggttctta accttttctt agccctgctt ttgtcaaatt 3361 ttggttcatc tagcttatca gcgccgacag ccgataacga taccaataaa atagccgagg 3421 ccttcaatcg aattgggcga tttaaaagtt gggttaagcg taatattgct gattgtttca 3481 agttaatacg taacaaattg acaaatcaaa taagtgatca accatcaggc aaaggcgttt 3541 gtcgttgtat atctgcagag cacggcgaca acgagctgga gctgggccac gacgagatac 3601 tcgccgacgg gctcatcaag aagggcatca aggaggcgac acagctggag gtggccatcg 3661 gtgatggcat ggagttcacg atacacggcg acatgaagaa caacaagccg aagaaatcca 3721 aatatctaaa taacgcaacg atgattggca actcaattaa ccaccaagac aatagactgg 3781 aacacgagct aaaccataga ggtttgtcct tacaggacga cgacactgcc agcattaact 3841 catatggtag ccataagaat cgaccattca aggatgagag ccacaagggc agcgccgaga 3901 cgatggaggg cgaggagaag cgggacgcca gcaaggagga tttaggtatc gatgaggagc 3961 tcgacgagga gggcgaattg gaggagggcc cgctcgacgg cgatatcatc atacatgcca 4021 acgatgagga tatactcgat gaatatccag ctgattgctg ccccgattcg tactataaga 4081 aatttccgat cttagccggt gatgatgact cgccgttctg gcaaggatgg ggcaatttac 4141 gactgaaaac ttttcaatta attgaaaata aatattttga aacagctgtt atcactatga 4201 ttttaatgag tagcttagct ttggcattag aagatgtaca tctgccacaa agacccatac 4261 tgcaggatat tttatactat atggacagaa tatttacggt tatattcttc ttggaaatgt 4321 taatcaagtg gctggcgctc ggcttcaaag tgtacttcac gaacgcgtgg tgctggctcg 4381 atttcgtcat tgtcatggta tcgcttatca acttcgttgc ttcacttgtt ggagctggtg 4441 gtattcaagc cttcaagact atgcgaacgt taagagcact gagaccacta cgtgccatgt 4501 cccgtatgca gggcatgagg gtcgtcgtta atgcgctggt acaagctata ccgtccatct 4561 tcaatgtgct attggtgtgt ctaatatttt ggctaatttt tgccataatg ggtgtacagc 4621 tttttgctgg aaaatatttt aagtgcgagg acatgaatgg cacgaagctc agccacgaga 4681 tcataccaaa tcgcaatgcc tgcgaaagcg agaactacac gtgggtgaat tcagcaatga 4741 atttcgatca tgtaggtaac gcgtatctgt gccttttcca agtggccacc ttcaaaggct 4801 ggatacaaat catgaacgat gctatcgatt cacgagaggt ggacaagcag ccaattcgtg 4861 aaacgaacat ctacatgtat ttatatttcg tattcttcat catatttgga tcatttttca 4921 cactcaatct gttcattggt gttatcattg ataattttaa tgagcaaaag aaaaaagcag 4981 gtggatcatt agaaatgttc atgacagaag atcagaaaaa gtactataat gctatgaaaa 5041 agatgggctc taaaaaacca ttaaaagcca ttccaagacc aaggtggcgt ccacaagcaa 5101 tagtctttga aatagtaacc gataagaaat tcgatatagt cataatgtta ttcattggtc 5161 tgaacatgtt caccatgaca ctcgatcgtt acgatgcgtc ggacacgtac aacgcggtcc 5221 ttgactatct caatgcgata ttcgtagtta ttttcagttc cgaatgtcta ttaaaaatat 5281 tcgctttacg atatcactat tttattgagc catggaattt atttgatgta gtagttgtca 5341 ttttatccat cttaggtctc gtacttagcg atattatcga gaaatacttc gtatcgccga 5401 cactgctccg agtggtgcgc gtggccaaag tgggtcgcgt actgcgtctg gtgaagggcg 5461 ccaagggtat acgaacgctg ctgttcgccc tggccatgtc gctgccggcg ctgttcaaca 5521 tctgcctgct gctgttcctg gtcatgttca tcttcgcgat attcggcatg tcgttcttca 5581 tgcatgtgaa ggagaagagc ggcatcaacg acgtctacaa cttcaagacg ttcggacaga 5641 gcatgatcct gctctttcag atgtctacct cagccggttg ggatggtgta ctcgacgcca 5701 ttatcaatga ggaagcatgc gatccacccg acaacgacaa aggctatccg ggcaattgtg 5761 gttcagcgac cgttggaata acgtttctcc tctcatacct agttataagc tttttgatag 5821 ttattaatat gtacattgct gtcattctcg agaactatag tcaggccacc gaggatgtgc 5881 aggagggtct caccgacgac gattacgata tgtactatga gatctggcaa cagttcgatc 5941 cggagggcac ccagtacata cgatacgacc agctgtccga gttcctcgac gtgctggagc 6001 ccccgctcca gattcacaag cccaacaagt acaaaatcat atcgatggac atacccatct 6061 gtcgcggtga cctcatgtac tgtgtggaca tactggacgc actgaccaaa gactttttcg 6121 cgcgcaaagg caatcccatt gaggagacgg gcgagattgg tgagattgcc gccaggccgg 6181 acaccgaggg ctacgagccc gtctcctcca ccctctggcg acagcgggag gagtactgtg 6241 cccgcctcat tcaacatgcc tggcgcaagc ataaaacgcg cgccgagggc ggtggtgcac 6301 cgtccgacgc ggaaggcgac ggccccgaag atggtgatgc gggtggcggt ggcggggcgg 6361 cgctgatgct gggtgttctg gatgttccag atgctgctgg cgatgcagca accactggct 6421 cccatgacgg ggcaacggca ctcgatcccg agaccgatcc atcgggagta ccggcggcag 6481 cggcggtggc cccacagcca gccggtgacg gcggcgaggg accggatgga ggagcaacag 6541 ccgatccgca cgagagcaat gtaaatagtc cgacgatgga cggcgcgacg gcgggcagcc 6601 cgggcgcagg gagcgctggc agcactggcc gacagacggc cgttctcgtg gagagcgatg 6661 ggtttgtgac caagaacggg cacaaggttg taatacactc gcgttcgccg agcataacgt 6721 cgcgcacggc ggatgtctga gccaggcctc gcccccccct ccaagatgca cgcgagtatt 6781 aggtgcaggt gcagatgcag tgcagtggtg gtgccacaac aacaacaaca acaacagcag 6841 gtgccactgg tagctgcaat tgcaactgca acagcagcaa caggaagaa