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LOCUS XM_041592006 6688 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X45, mRNA. ACCESSION XM_041592006 VERSION XM_041592006.1 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6688 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6688 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 49 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6539 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X45" /protein_id="XP_041447940.1" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLE DIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIIT TILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDF VVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIIL TMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDG ISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDL YQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIR EAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEK GNDDNNKEKMSIRSVEVESESTSLSLPGSPFNIRRGSRSSHKYTIRNGRGRFGIPGSD RKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLGSRHSSYTSHQSRI SYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTTCLDPNHKVEHRDFE IGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDRGEDD DEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQEWISLIVFDPFVELFITLCIVVN TMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATMKLCAMSPKYYFQEGWNIFDFII VALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISIMGRTMGALGNLTFVL CIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNFTDFMHSFMIVFRVLCGEWIESM WDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGSSSLSAPTADNDTNKIAEA FNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSEHGDNELELGHDEILADGLIKKG IKEATQLEVAIGDGMEFTIHGDMKNNKPKKSKYLNNATDDDTASINSYGSHKNRPFKD ESHKGSAETMEGEEKRDASKEDLGIDEELDEEGELEEGPLDGDIIIHANDEDILDEYP ADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAVITMILMSSLAL ALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVIVM VSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNVL LVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNF DHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFF TLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRP QAIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSSEC LLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGRV LRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGINDV YNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGNCGSATVGITFL LSYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIR YDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGNP IEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKTRAEGGGAPSDA EGDGPEDGDAGGGGGAALMLGVLDVPDAAGDAATTGSHDGATALDPETDPSGVPAAAA VAPQPAGDGGEGPDGGATADPHESNVNSPTMDGATAGSPGAGSAGSTGRQTAVLVESD GFVTKNGHKVVIHSRSPSITSRTADV" misc_feature 687..1541 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1824..2381 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2586..3221 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3297..3956 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 3966..4781 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4749..4907 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 4794..4805 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 4929..5681 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5712..5855 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gagccgcaat atggtcgcaa gaaaaaacaa aaagaaatcc 421 gatatgatga cgaggacgag gatgaaggtc cacaaccgga tcctacactt gaacagggtg 481 tgccaatacc tgttcgactg cagggcagct tccctccgga attggcctcc actcccctcg 541 aggatatcga tcccttctac agcaatatac tgacattcgt agttgtaagc aaaggaaaag 601 atatttttcg cttttctgca tcaaaagcaa tgtggctgct cgatccattc aatccgatac 661 gtcgtgtggc catttacatt ttagtgcatc cactattttc gttattcatc attaccacaa 721 ttctcgtcaa ctgcatcctg atgataatgc cgacaacgcc cacagttgag tccactgagg 781 tgatattcac cggaatctac acatttgaat cagctgttaa agtgatggca cgaggtttca 841 ttttatgccc gtttacgtat cttagagatg catggaattg gctggacttc gtagtaatag 901 ctttagctta tgtgaccatg ggtatagatt taggtaatct tgcagccttg cgaacgttta 961 gggtgctgcg agcgcttaaa accgtagcca ttgtgccagg cttgaagacc attgtcggtg 1021 cggtcatcga atctgtaaag aatctgcgcg atgtgataat tttgacaatg ttctccctgt 1081 cggtgttcgc gctgatgggg ctgcaaatct acatgggcgt gctaacgcag aagtgcatca 1141 agaagttccc gctggacggc tcctggggca acctgaccga cgagaactgg gcctatcaca 1201 atagcaacaa ctctaattgg tattcggaag acgacggtat atcctttccg ttgtgcggta 1261 atatctctgg agcggggcaa tgtgaagacg attacgtgtg tctgcagggg ttcgggccga 1321 acccgaacta tggctacacc agtttcgatt cgttcggttg ggcgtttctg tccgccttcc 1381 ggctgatgac gcaggacttc tgggaggatc tgtatcagct ggtgttgcgt gccgcaggac 1441 cctggcacat gctgttcttt atagtcatca tcttcctagg ttcattctat cttgtgaatt 1501 tgattttggc cattgttgcc atgtcgtatg acgaattgca aaagaaggcc gaagaagaag 1561 aggctgccga agaggaggcg atacgtgaag ccgaggaagc tgccgccgcc aaagcagcca 1621 agctggagga gcgcgccaat gcgcaggccc aggccgccgc cgatgcagct gccgccgaag 1681 aggcggctct tcatccggag atggccaaga gtccgacgta ttcgtgcatc agctatgagc 1741 tatttgtggg cggcgagaaa ggcaacgatg acaacaacaa ggagaagatg tccatacgca 1801 gcgttgaggt ggagtcggag tcgacatcct tatccttacc tggttcaccg tttaacatac 1861 gcaggggatc acgtagttct cacaagtaca cgatccggaa tggacgtgga cgctttggta 1921 tacccggcag cgatcgcaag ccgttggtat tgtcaacata tcaggatgct cagcagcact 1981 tgccctatgc cgatgattcg aacgctgtta cgcccatgtc cgaggagaac ggtgccatta 2041 tagtgcccgt ttattatgga aatctaggct ccaggcattc atcgtatact tcgcatcagt 2101 ccagaatatc gtatacctca catggcgatc tattgggcgg catggccgtc atgggcgtca 2161 gcacaatgac caaggagagc aaattgcgaa atcgcaactc acgcaatcaa tcagtgggcg 2221 ccaccaatgg cggcaccacc tgcctggacc ccaatcacaa ggtcgagcat cgcgacttcg 2281 aaatcggtct ggagtgcacg gacgaagctg gcaagattaa acatcatgac aatcctttta 2341 tcgagcccgt ccagacacaa acggtagtcg acatgaaaga tgtgatggta ctgaatgaca 2401 ttatcgaaca ggccgctggt cggcacagtc gggctagtga tcgcggtgag gacgatgatg 2461 aggatgggcc gacattaaaa gacaaggccc tcgaagcgct aatgaaaggc atcgaagtgt 2521 tttgtgtgtg ggactgttgc tgggtttggt tgaaattgca ggagtggata tcgctgatcg 2581 tcttcgatcc ctttgtcgag ctcttcatca cgctgtgcat tgtggtcaac acgatgttca 2641 tggccatgga ccatcacgac atgaacaagg agatggaacg catccttaag tgcggaaatt 2701 atttcttcac ggcaacattc gccattgagg caaccatgaa actgtgcgcc atgagcccca 2761 aatactattt ccaggagggc tggaacatct ttgacttcat cattgtggca ctctcattgc 2821 tggagctggg cctcgagggc gttcagggcc tctccgtctt gcgttcgttt cgtttgctgc 2881 gtgtattcaa attggccaag tcctggccaa cacttaattt actcatttcg attatgggac 2941 gcaccatggg cgctttgggt aatctgacat ttgtactttg cattatcatc ttcatctttg 3001 cggtgatggg aatgcaactg ttcggaaaga attatcatga taacaaggat cgcttcccgg 3061 acggtgacct gccccgctgg aacttcaccg acttcatgca cagcttcatg atcgtgtttc 3121 gggtgctatg cggcgagtgg atcgagtcca tgtgggactg tatgcacgtg ggcgatgtat 3181 cgtgcattcc attcttcttg gccaccgttg tcatcggcaa tttagtggtt cttaaccttt 3241 tcttagccct gcttttgtca aattttggtt catctagctt atcagcgccg acagccgata 3301 acgataccaa taaaatagcc gaggccttca atcgaattgg gcgatttaaa agttgggtta 3361 agcgtaatat tgctgattgt ttcaagttaa tacgtaacaa attgacaaat caaataagtg 3421 atcaaccatc agagcacggc gacaacgagc tggagctggg ccacgacgag atactcgccg 3481 acgggctcat caagaagggc atcaaggagg cgacacagct ggaggtggcc atcggtgatg 3541 gcatggagtt cacgatacac ggcgacatga agaacaacaa gccgaagaaa tccaaatatc 3601 taaataacgc aacggacgac gacactgcca gcattaactc atatggtagc cataagaatc 3661 gaccattcaa ggatgagagc cacaagggca gcgccgagac gatggagggc gaggagaagc 3721 gggacgccag caaggaggat ttaggtatcg atgaggagct cgacgaggag ggcgaattgg 3781 aggagggccc gctcgacggc gatatcatca tacatgccaa cgatgaggat atactcgatg 3841 aatatccagc tgattgctgc cccgattcgt actataagaa atttccgatc ttagccggtg 3901 atgatgactc gccgttctgg caaggatggg gcaatttacg actgaaaact tttcaattaa 3961 ttgaaaataa atattttgaa acagctgtta tcactatgat tttaatgagt agcttagctt 4021 tggcattaga agatgtacat ctgccacaaa gacccatact gcaggatatt ttatactata 4081 tggacagaat atttacggtt atattcttct tggaaatgtt aatcaagtgg ctggcgctcg 4141 gcttcaaagt gtacttcacg aacgcgtggt gctggctcga tttcgtcatt gtcatggtat 4201 cgcttatcaa cttcgttgct tcacttgttg gagctggtgg tattcaagcc ttcaagacta 4261 tgcgaacgtt aagagcactg agaccactac gtgccatgtc ccgtatgcag ggcatgaggg 4321 tcgtcgttaa tgcgctggta caagctatac cgtccatctt caatgtgcta ttggtgtgtc 4381 taatattttg gctaattttt gccataatgg gtgtacagct ttttgctgga aaatatttta 4441 agtgcgagga catgaatggc acgaagctca gccacgagat cataccaaat cgcaatgcct 4501 gcgaaagcga gaactacacg tgggtgaatt cagcaatgaa tttcgatcat gtaggtaacg 4561 cgtatctgtg ccttttccaa gtggccacct tcaaaggctg gatacaaatc atgaacgatg 4621 ctatcgattc acgagaggtg gacaagcagc caattcgtga aacgaacatc tacatgtatt 4681 tatatttcgt attcttcatc atatttggat catttttcac actcaatctg ttcattggtg 4741 ttatcattga taattttaat gagcaaaaga aaaaagcagg tggatcatta gaaatgttca 4801 tgacagaaga tcagaaaaag tactataatg ctatgaaaaa gatgggctct aaaaaaccat 4861 taaaagccat tccaagacca aggtggcgtc cacaagcaat agtctttgaa atagtaaccg 4921 ataagaaatt cgatatagtc ataatgttat tcattggtct gaacatgttc accatgacac 4981 tcgatcgtta cgatgcgtcg gacacgtaca acgcggtcct tgactatctc aatgcgatat 5041 tcgtagttat tttcagttcc gaatgtctat taaaaatatt cgctttacga tatcactatt 5101 ttattgagcc atggaattta tttgatgtag tagttgtcat tttatccatc ttaggtctcg 5161 tacttagcga tattatcgag aaatacttcg tatcgccgac actgctccga gtggtgcgcg 5221 tggccaaagt gggtcgcgta ctgcgtctgg tgaagggcgc caagggtata cgaacgctgc 5281 tgttcgccct ggccatgtcg ctgccggcgc tgttcaacat ctgcctgctg ctgttcctgg 5341 tcatgttcat cttcgcgata ttcggcatgt cgttcttcat gcatgtgaag gagaagagcg 5401 gcatcaacga cgtctacaac ttcaagacgt tcggacagag catgatcctg ctctttcaga 5461 tgtctacctc agccggttgg gatggtgtac tcgacgccat tatcaatgag gaagcatgcg 5521 atccacccga caacgacaaa ggctatccgg gcaattgtgg ttcagcgacc gttggaataa 5581 cgtttctcct ctcataccta gttataagct ttttgatagt tattaatatg tacattgctg 5641 tcattctcga gaactatagt caggccaccg aggatgtgca ggagggtctc accgacgacg 5701 attacgatat gtactatgag atctggcaac agttcgatcc ggagggcacc cagtacatac 5761 gatacgacca gctgtccgag ttcctcgacg tgctggagcc cccgctccag attcacaagc 5821 ccaacaagta caaaatcata tcgatggaca tacccatctg tcgcggtgac ctcatgtact 5881 gtgtggacat actggacgca ctgaccaaag actttttcgc gcgcaaaggc aatcccattg 5941 aggagacggg cgagattggt gagattgccg ccaggccgga caccgagggc tacgagcccg 6001 tctcctccac cctctggcga cagcgggagg agtactgtgc ccgcctcatt caacatgcct 6061 ggcgcaagca taaaacgcgc gccgagggcg gtggtgcacc gtccgacgcg gaaggcgacg 6121 gccccgaaga tggtgatgcg ggtggcggtg gcggggcggc gctgatgctg ggtgttctgg 6181 atgttccaga tgctgctggc gatgcagcaa ccactggctc ccatgacggg gcaacggcac 6241 tcgatcccga gaccgatcca tcgggagtac cggcggcagc ggcggtggcc ccacagccag 6301 ccggtgacgg cggcgaggga ccggatggag gagcaacagc cgatccgcac gagagcaatg 6361 taaatagtcc gacgatggac ggcgcgacgg cgggcagccc gggcgcaggg agcgctggca 6421 gcactggccg acagacggcc gttctcgtgg agagcgatgg gtttgtgacc aagaacgggc 6481 acaaggttgt aatacactcg cgttcgccga gcataacgtc gcgcacggcg gatgtctgag 6541 ccaggcctcg cccccccctc caagatgcac gcgagtatta ggtgcaggtg cagatgcagt 6601 gcagtggtgg tgccacaaca acaacaacaa caacagcagg tgccactggt agctgcaatt 6661 gcaactgcaa cagcagcaac aggaagaa