PREDICTED: Drosophila obscura sodium channel protein para
LOCUS XM_041592006 6688 bp mRNA linear INV 14-MAY-2021
(LOC111070739), transcript variant X45, mRNA.
ACCESSION XM_041592006
VERSION XM_041592006.1
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..6688
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..6688
/gene="LOC111070739"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 49 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 6 samples with support for all annotated
introns"
/db_xref="GeneID:111070739"
CDS 237..6539
/gene="LOC111070739"
/codon_start=1
/product="sodium channel protein para isoform X45"
/protein_id="XP_041447940.1"
/db_xref="GeneID:111070739"
/translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK
RAEGEPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLE
DIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIIT
TILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDF
VVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIIL
TMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDG
ISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDL
YQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIR
EAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEK
GNDDNNKEKMSIRSVEVESESTSLSLPGSPFNIRRGSRSSHKYTIRNGRGRFGIPGSD
RKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLGSRHSSYTSHQSRI
SYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTTCLDPNHKVEHRDFE
IGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDRGEDD
DEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQEWISLIVFDPFVELFITLCIVVN
TMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATMKLCAMSPKYYFQEGWNIFDFII
VALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISIMGRTMGALGNLTFVL
CIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNFTDFMHSFMIVFRVLCGEWIESM
WDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGSSSLSAPTADNDTNKIAEA
FNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSEHGDNELELGHDEILADGLIKKG
IKEATQLEVAIGDGMEFTIHGDMKNNKPKKSKYLNNATDDDTASINSYGSHKNRPFKD
ESHKGSAETMEGEEKRDASKEDLGIDEELDEEGELEEGPLDGDIIIHANDEDILDEYP
ADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAVITMILMSSLAL
ALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVIVM
VSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNVL
LVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNF
DHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFF
TLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRP
QAIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSSEC
LLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGRV
LRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGINDV
YNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGNCGSATVGITFL
LSYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIR
YDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGNP
IEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKTRAEGGGAPSDA
EGDGPEDGDAGGGGGAALMLGVLDVPDAAGDAATTGSHDGATALDPETDPSGVPAAAA
VAPQPAGDGGEGPDGGATADPHESNVNSPTMDGATAGSPGAGSAGSTGRQTAVLVESD
GFVTKNGHKVVIHSRSPSITSRTADV"
misc_feature 687..1541
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 1824..2381
/gene="LOC111070739"
/note="Cytoplasmic domain of voltage-gated Na+ ion
channel; Region: Na_trans_cytopl; pfam11933"
/db_xref="CDD:463401"
misc_feature 2586..3221
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 3297..3956
/gene="LOC111070739"
/note="Sodium ion transport-associated; Region:
Na_trans_assoc; pfam06512"
/db_xref="CDD:461936"
misc_feature 3966..4781
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 4749..4907
/gene="LOC111070739"
/note="Inactivation gate of the voltage-gated sodium
channel alpha subunits; Region: Na_channel_gate; cd13433"
/db_xref="CDD:240441"
misc_feature 4794..4805
/gene="LOC111070739"
/note="putative hydrophobic latch; other site"
/db_xref="CDD:240441"
misc_feature 4929..5681
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 5712..5855
/gene="LOC111070739"
/note="Voltage-dependent L-type calcium channel,
IQ-associated; Region: GPHH; pfam16905"
/db_xref="CDD:465306"
ORIGIN
1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca
61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg
121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac
181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga
241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg
301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg
361 aaagaaagag agccgaggga gagccgcaat atggtcgcaa gaaaaaacaa aaagaaatcc
421 gatatgatga cgaggacgag gatgaaggtc cacaaccgga tcctacactt gaacagggtg
481 tgccaatacc tgttcgactg cagggcagct tccctccgga attggcctcc actcccctcg
541 aggatatcga tcccttctac agcaatatac tgacattcgt agttgtaagc aaaggaaaag
601 atatttttcg cttttctgca tcaaaagcaa tgtggctgct cgatccattc aatccgatac
661 gtcgtgtggc catttacatt ttagtgcatc cactattttc gttattcatc attaccacaa
721 ttctcgtcaa ctgcatcctg atgataatgc cgacaacgcc cacagttgag tccactgagg
781 tgatattcac cggaatctac acatttgaat cagctgttaa agtgatggca cgaggtttca
841 ttttatgccc gtttacgtat cttagagatg catggaattg gctggacttc gtagtaatag
901 ctttagctta tgtgaccatg ggtatagatt taggtaatct tgcagccttg cgaacgttta
961 gggtgctgcg agcgcttaaa accgtagcca ttgtgccagg cttgaagacc attgtcggtg
1021 cggtcatcga atctgtaaag aatctgcgcg atgtgataat tttgacaatg ttctccctgt
1081 cggtgttcgc gctgatgggg ctgcaaatct acatgggcgt gctaacgcag aagtgcatca
1141 agaagttccc gctggacggc tcctggggca acctgaccga cgagaactgg gcctatcaca
1201 atagcaacaa ctctaattgg tattcggaag acgacggtat atcctttccg ttgtgcggta
1261 atatctctgg agcggggcaa tgtgaagacg attacgtgtg tctgcagggg ttcgggccga
1321 acccgaacta tggctacacc agtttcgatt cgttcggttg ggcgtttctg tccgccttcc
1381 ggctgatgac gcaggacttc tgggaggatc tgtatcagct ggtgttgcgt gccgcaggac
1441 cctggcacat gctgttcttt atagtcatca tcttcctagg ttcattctat cttgtgaatt
1501 tgattttggc cattgttgcc atgtcgtatg acgaattgca aaagaaggcc gaagaagaag
1561 aggctgccga agaggaggcg atacgtgaag ccgaggaagc tgccgccgcc aaagcagcca
1621 agctggagga gcgcgccaat gcgcaggccc aggccgccgc cgatgcagct gccgccgaag
1681 aggcggctct tcatccggag atggccaaga gtccgacgta ttcgtgcatc agctatgagc
1741 tatttgtggg cggcgagaaa ggcaacgatg acaacaacaa ggagaagatg tccatacgca
1801 gcgttgaggt ggagtcggag tcgacatcct tatccttacc tggttcaccg tttaacatac
1861 gcaggggatc acgtagttct cacaagtaca cgatccggaa tggacgtgga cgctttggta
1921 tacccggcag cgatcgcaag ccgttggtat tgtcaacata tcaggatgct cagcagcact
1981 tgccctatgc cgatgattcg aacgctgtta cgcccatgtc cgaggagaac ggtgccatta
2041 tagtgcccgt ttattatgga aatctaggct ccaggcattc atcgtatact tcgcatcagt
2101 ccagaatatc gtatacctca catggcgatc tattgggcgg catggccgtc atgggcgtca
2161 gcacaatgac caaggagagc aaattgcgaa atcgcaactc acgcaatcaa tcagtgggcg
2221 ccaccaatgg cggcaccacc tgcctggacc ccaatcacaa ggtcgagcat cgcgacttcg
2281 aaatcggtct ggagtgcacg gacgaagctg gcaagattaa acatcatgac aatcctttta
2341 tcgagcccgt ccagacacaa acggtagtcg acatgaaaga tgtgatggta ctgaatgaca
2401 ttatcgaaca ggccgctggt cggcacagtc gggctagtga tcgcggtgag gacgatgatg
2461 aggatgggcc gacattaaaa gacaaggccc tcgaagcgct aatgaaaggc atcgaagtgt
2521 tttgtgtgtg ggactgttgc tgggtttggt tgaaattgca ggagtggata tcgctgatcg
2581 tcttcgatcc ctttgtcgag ctcttcatca cgctgtgcat tgtggtcaac acgatgttca
2641 tggccatgga ccatcacgac atgaacaagg agatggaacg catccttaag tgcggaaatt
2701 atttcttcac ggcaacattc gccattgagg caaccatgaa actgtgcgcc atgagcccca
2761 aatactattt ccaggagggc tggaacatct ttgacttcat cattgtggca ctctcattgc
2821 tggagctggg cctcgagggc gttcagggcc tctccgtctt gcgttcgttt cgtttgctgc
2881 gtgtattcaa attggccaag tcctggccaa cacttaattt actcatttcg attatgggac
2941 gcaccatggg cgctttgggt aatctgacat ttgtactttg cattatcatc ttcatctttg
3001 cggtgatggg aatgcaactg ttcggaaaga attatcatga taacaaggat cgcttcccgg
3061 acggtgacct gccccgctgg aacttcaccg acttcatgca cagcttcatg atcgtgtttc
3121 gggtgctatg cggcgagtgg atcgagtcca tgtgggactg tatgcacgtg ggcgatgtat
3181 cgtgcattcc attcttcttg gccaccgttg tcatcggcaa tttagtggtt cttaaccttt
3241 tcttagccct gcttttgtca aattttggtt catctagctt atcagcgccg acagccgata
3301 acgataccaa taaaatagcc gaggccttca atcgaattgg gcgatttaaa agttgggtta
3361 agcgtaatat tgctgattgt ttcaagttaa tacgtaacaa attgacaaat caaataagtg
3421 atcaaccatc agagcacggc gacaacgagc tggagctggg ccacgacgag atactcgccg
3481 acgggctcat caagaagggc atcaaggagg cgacacagct ggaggtggcc atcggtgatg
3541 gcatggagtt cacgatacac ggcgacatga agaacaacaa gccgaagaaa tccaaatatc
3601 taaataacgc aacggacgac gacactgcca gcattaactc atatggtagc cataagaatc
3661 gaccattcaa ggatgagagc cacaagggca gcgccgagac gatggagggc gaggagaagc
3721 gggacgccag caaggaggat ttaggtatcg atgaggagct cgacgaggag ggcgaattgg
3781 aggagggccc gctcgacggc gatatcatca tacatgccaa cgatgaggat atactcgatg
3841 aatatccagc tgattgctgc cccgattcgt actataagaa atttccgatc ttagccggtg
3901 atgatgactc gccgttctgg caaggatggg gcaatttacg actgaaaact tttcaattaa
3961 ttgaaaataa atattttgaa acagctgtta tcactatgat tttaatgagt agcttagctt
4021 tggcattaga agatgtacat ctgccacaaa gacccatact gcaggatatt ttatactata
4081 tggacagaat atttacggtt atattcttct tggaaatgtt aatcaagtgg ctggcgctcg
4141 gcttcaaagt gtacttcacg aacgcgtggt gctggctcga tttcgtcatt gtcatggtat
4201 cgcttatcaa cttcgttgct tcacttgttg gagctggtgg tattcaagcc ttcaagacta
4261 tgcgaacgtt aagagcactg agaccactac gtgccatgtc ccgtatgcag ggcatgaggg
4321 tcgtcgttaa tgcgctggta caagctatac cgtccatctt caatgtgcta ttggtgtgtc
4381 taatattttg gctaattttt gccataatgg gtgtacagct ttttgctgga aaatatttta
4441 agtgcgagga catgaatggc acgaagctca gccacgagat cataccaaat cgcaatgcct
4501 gcgaaagcga gaactacacg tgggtgaatt cagcaatgaa tttcgatcat gtaggtaacg
4561 cgtatctgtg ccttttccaa gtggccacct tcaaaggctg gatacaaatc atgaacgatg
4621 ctatcgattc acgagaggtg gacaagcagc caattcgtga aacgaacatc tacatgtatt
4681 tatatttcgt attcttcatc atatttggat catttttcac actcaatctg ttcattggtg
4741 ttatcattga taattttaat gagcaaaaga aaaaagcagg tggatcatta gaaatgttca
4801 tgacagaaga tcagaaaaag tactataatg ctatgaaaaa gatgggctct aaaaaaccat
4861 taaaagccat tccaagacca aggtggcgtc cacaagcaat agtctttgaa atagtaaccg
4921 ataagaaatt cgatatagtc ataatgttat tcattggtct gaacatgttc accatgacac
4981 tcgatcgtta cgatgcgtcg gacacgtaca acgcggtcct tgactatctc aatgcgatat
5041 tcgtagttat tttcagttcc gaatgtctat taaaaatatt cgctttacga tatcactatt
5101 ttattgagcc atggaattta tttgatgtag tagttgtcat tttatccatc ttaggtctcg
5161 tacttagcga tattatcgag aaatacttcg tatcgccgac actgctccga gtggtgcgcg
5221 tggccaaagt gggtcgcgta ctgcgtctgg tgaagggcgc caagggtata cgaacgctgc
5281 tgttcgccct ggccatgtcg ctgccggcgc tgttcaacat ctgcctgctg ctgttcctgg
5341 tcatgttcat cttcgcgata ttcggcatgt cgttcttcat gcatgtgaag gagaagagcg
5401 gcatcaacga cgtctacaac ttcaagacgt tcggacagag catgatcctg ctctttcaga
5461 tgtctacctc agccggttgg gatggtgtac tcgacgccat tatcaatgag gaagcatgcg
5521 atccacccga caacgacaaa ggctatccgg gcaattgtgg ttcagcgacc gttggaataa
5581 cgtttctcct ctcataccta gttataagct ttttgatagt tattaatatg tacattgctg
5641 tcattctcga gaactatagt caggccaccg aggatgtgca ggagggtctc accgacgacg
5701 attacgatat gtactatgag atctggcaac agttcgatcc ggagggcacc cagtacatac
5761 gatacgacca gctgtccgag ttcctcgacg tgctggagcc cccgctccag attcacaagc
5821 ccaacaagta caaaatcata tcgatggaca tacccatctg tcgcggtgac ctcatgtact
5881 gtgtggacat actggacgca ctgaccaaag actttttcgc gcgcaaaggc aatcccattg
5941 aggagacggg cgagattggt gagattgccg ccaggccgga caccgagggc tacgagcccg
6001 tctcctccac cctctggcga cagcgggagg agtactgtgc ccgcctcatt caacatgcct
6061 ggcgcaagca taaaacgcgc gccgagggcg gtggtgcacc gtccgacgcg gaaggcgacg
6121 gccccgaaga tggtgatgcg ggtggcggtg gcggggcggc gctgatgctg ggtgttctgg
6181 atgttccaga tgctgctggc gatgcagcaa ccactggctc ccatgacggg gcaacggcac
6241 tcgatcccga gaccgatcca tcgggagtac cggcggcagc ggcggtggcc ccacagccag
6301 ccggtgacgg cggcgaggga ccggatggag gagcaacagc cgatccgcac gagagcaatg
6361 taaatagtcc gacgatggac ggcgcgacgg cgggcagccc gggcgcaggg agcgctggca
6421 gcactggccg acagacggcc gttctcgtgg agagcgatgg gtttgtgacc aagaacgggc
6481 acaaggttgt aatacactcg cgttcgccga gcataacgtc gcgcacggcg gatgtctgag
6541 ccaggcctcg cccccccctc caagatgcac gcgagtatta ggtgcaggtg cagatgcagt
6601 gcagtggtgg tgccacaaca acaacaacaa caacagcagg tgccactggt agctgcaatt
6661 gcaactgcaa cagcagcaac aggaagaa