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LOCUS XM_041592005 6691 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X43, mRNA. ACCESSION XM_041592005 VERSION XM_041592005.1 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6691 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6691 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 48 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6542 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X43" /protein_id="XP_041447939.1" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEVIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLEDIDPFYSNIL TFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIITTILVNCILMI MPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDFVVIALAYVTM GIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFAL MGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDGISFPLCGNIS GAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDLYQLVLRAAGP WHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIREAEEAAAAKA AKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEKGNDDNNKEKM SIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTYTIRNGRGRFGIPGSDRKPLVLS TYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLGSRHSSYTSHQSRISYTSHGD LLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTTCLDPNHKVEHRDFEIGLECTD EAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDRGVSVYYFPTED DDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQEWISLIVFDPFVELFITLCIVV NTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATMKLCAMSPKYYFQEGWNIFDFI IVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISIMGRTMGALGNLTFV LCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNFTDFMHSFMIVFRVLCGEWIES MWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGSSSLSAPTADNDTNKIAE AFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSEHGDNELELGHDEILADGLIKK GIKEATQLEVAIGDGMEFTIHGDMKNNKPKKSKYLNNATDDDTASINSYGSHKNRPFK DESHKGSAETMEGEEKRDASKEDLGIDEELDEEGELEEGPLDGDIIIHANDEDILDEY PADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAVITMILMSSLA LALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVIV MVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNV LLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMN FDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSF FTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWR PQAIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSSE CLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGR VLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGIND VYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGNCGSATVGITF LLSYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYI RYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGN PIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKTRAEGGGAPSD AEGDGPEDGDAGGGGGAALMLGVLDVPDAAGDAATTGSHDGATALDPETDPSGVPAAA AVAPQPAGDGGEGPDGGATADPHESNVNSPTMDGATAGSPGAGSAGSTGRQTAVLVES DGFVTKNGHKVVIHSRSPSITSRTADV" misc_feature 657..1511 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1860..2360 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2589..3224 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3300..3959 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 3969..4784 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4752..4910 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 4797..4808 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 4932..5684 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5715..5858 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gaggtgatcc gatatgatga cgaggacgag gatgaaggtc 421 cacaaccgga tcctacactt gaacagggtg tgccaatacc tgttcgactg cagggcagct 481 tccctccgga attggcctcc actcccctcg aggatatcga tcccttctac agcaatatac 541 tgacattcgt agttgtaagc aaaggaaaag atatttttcg cttttctgca tcaaaagcaa 601 tgtggctgct cgatccattc aatccgatac gtcgtgtggc catttacatt ttagtgcatc 661 cactattttc gttattcatc attaccacaa ttctcgtcaa ctgcatcctg atgataatgc 721 cgacaacgcc cacagttgag tccactgagg tgatattcac cggaatctac acatttgaat 781 cagctgttaa agtgatggca cgaggtttca ttttatgccc gtttacgtat cttagagatg 841 catggaattg gctggacttc gtagtaatag ctttagctta tgtgaccatg ggtatagatt 901 taggtaatct tgcagccttg cgaacgttta gggtgctgcg agcgcttaaa accgtagcca 961 ttgtgccagg cttgaagacc attgtcggtg cggtcatcga atctgtaaag aatctgcgcg 1021 atgtgataat tttgacaatg ttctccctgt cggtgttcgc gctgatgggg ctgcaaatct 1081 acatgggcgt gctaacgcag aagtgcatca agaagttccc gctggacggc tcctggggca 1141 acctgaccga cgagaactgg gcctatcaca atagcaacaa ctctaattgg tattcggaag 1201 acgacggtat atcctttccg ttgtgcggta atatctctgg agcggggcaa tgtgaagacg 1261 attacgtgtg tctgcagggg ttcgggccga acccgaacta tggctacacc agtttcgatt 1321 cgttcggttg ggcgtttctg tccgccttcc ggctgatgac gcaggacttc tgggaggatc 1381 tgtatcagct ggtgttgcgt gccgcaggac cctggcacat gctgttcttt atagtcatca 1441 tcttcctagg ttcattctat cttgtgaatt tgattttggc cattgttgcc atgtcgtatg 1501 acgaattgca aaagaaggcc gaagaagaag aggctgccga agaggaggcg atacgtgaag 1561 ccgaggaagc tgccgccgcc aaagcagcca agctggagga gcgcgccaat gcgcaggccc 1621 aggccgccgc cgatgcagct gccgccgaag aggcggctct tcatccggag atggccaaga 1681 gtccgacgta ttcgtgcatc agctatgagc tatttgtggg cggcgagaaa ggcaacgatg 1741 acaacaacaa ggagaagatg tccatacgca gcgttgaggt ggagtcggag tcggtgagcg 1801 ttatacaaag acaaccagca cctaccacag cacaccaagc taccaaagtt cgtaaagtga 1861 gcacgtacac gatccggaat ggacgtggac gctttggtat acccggcagc gatcgcaagc 1921 cgttggtatt gtcaacatat caggatgctc agcagcactt gccctatgcc gatgattcga 1981 acgctgttac gcccatgtcc gaggagaacg gtgccattat agtgcccgtt tattatggaa 2041 atctaggctc caggcattca tcgtatactt cgcatcagtc cagaatatcg tatacctcac 2101 atggcgatct attgggcggc atggccgtca tgggcgtcag cacaatgacc aaggagagca 2161 aattgcgaaa tcgcaactca cgcaatcaat cagtgggcgc caccaatggc ggcaccacct 2221 gcctggaccc caatcacaag gtcgagcatc gcgacttcga aatcggtctg gagtgcacgg 2281 acgaagctgg caagattaaa catcatgaca atccttttat cgagcccgtc cagacacaaa 2341 cggtagtcga catgaaagat gtgatggtac tgaatgacat tatcgaacag gccgctggtc 2401 ggcacagtcg ggctagtgat cgcggtgtct ccgtttacta tttcccaaca gaggacgatg 2461 atgaggatgg gccgacatta aaagacaagg ccctcgaagc gctaatgaaa ggcatcgaag 2521 tgttttgtgt gtgggactgt tgctgggttt ggttgaaatt gcaggagtgg atatcgctga 2581 tcgtcttcga tccctttgtc gagctcttca tcacgctgtg cattgtggtc aacacgatgt 2641 tcatggccat ggaccatcac gacatgaaca aggagatgga acgcatcctt aagtgcggaa 2701 attatttctt cacggcaaca ttcgccattg aggcaaccat gaaactgtgc gccatgagcc 2761 ccaaatacta tttccaggag ggctggaaca tctttgactt catcattgtg gcactctcat 2821 tgctggagct gggcctcgag ggcgttcagg gcctctccgt cttgcgttcg tttcgtttgc 2881 tgcgtgtatt caaattggcc aagtcctggc caacacttaa tttactcatt tcgattatgg 2941 gacgcaccat gggcgctttg ggtaatctga catttgtact ttgcattatc atcttcatct 3001 ttgcggtgat gggaatgcaa ctgttcggaa agaattatca tgataacaag gatcgcttcc 3061 cggacggtga cctgccccgc tggaacttca ccgacttcat gcacagcttc atgatcgtgt 3121 ttcgggtgct atgcggcgag tggatcgagt ccatgtggga ctgtatgcac gtgggcgatg 3181 tatcgtgcat tccattcttc ttggccaccg ttgtcatcgg caatttagtg gttcttaacc 3241 ttttcttagc cctgcttttg tcaaattttg gttcatctag cttatcagcg ccgacagccg 3301 ataacgatac caataaaata gccgaggcct tcaatcgaat tgggcgattt aaaagttggg 3361 ttaagcgtaa tattgctgat tgtttcaagt taatacgtaa caaattgaca aatcaaataa 3421 gtgatcaacc atcagagcac ggcgacaacg agctggagct gggccacgac gagatactcg 3481 ccgacgggct catcaagaag ggcatcaagg aggcgacaca gctggaggtg gccatcggtg 3541 atggcatgga gttcacgata cacggcgaca tgaagaacaa caagccgaag aaatccaaat 3601 atctaaataa cgcaacggac gacgacactg ccagcattaa ctcatatggt agccataaga 3661 atcgaccatt caaggatgag agccacaagg gcagcgccga gacgatggag ggcgaggaga 3721 agcgggacgc cagcaaggag gatttaggta tcgatgagga gctcgacgag gagggcgaat 3781 tggaggaggg cccgctcgac ggcgatatca tcatacatgc caacgatgag gatatactcg 3841 atgaatatcc agctgattgc tgccccgatt cgtactataa gaaatttccg atcttagccg 3901 gtgatgatga ctcgccgttc tggcaaggat ggggcaattt acgactgaaa acttttcaat 3961 taattgaaaa taaatatttt gaaacagctg ttatcactat gattttaatg agtagcttag 4021 ctttggcatt agaagatgta catctgccac aaagacccat actgcaggat attttatact 4081 atatggacag aatatttacg gttatattct tcttggaaat gttaatcaag tggctggcgc 4141 tcggcttcaa agtgtacttc acgaacgcgt ggtgctggct cgatttcgtc attgtcatgg 4201 tatcgcttat caacttcgtt gcttcacttg ttggagctgg tggtattcaa gccttcaaga 4261 ctatgcgaac gttaagagca ctgagaccac tacgtgccat gtcccgtatg cagggcatga 4321 gggtcgtcgt taatgcgctg gtacaagcta taccgtccat cttcaatgtg ctattggtgt 4381 gtctaatatt ttggctaatt tttgccataa tgggtgtaca gctttttgct ggaaaatatt 4441 ttaagtgcga ggacatgaat ggcacgaagc tcagccacga gatcatacca aatcgcaatg 4501 cctgcgaaag cgagaactac acgtgggtga attcagcaat gaatttcgat catgtaggta 4561 acgcgtatct gtgccttttc caagtggcca ccttcaaagg ctggatacaa atcatgaacg 4621 atgctatcga ttcacgagag gtggacaagc agccaattcg tgaaacgaac atctacatgt 4681 atttatattt cgtattcttc atcatatttg gatcattttt cacactcaat ctgttcattg 4741 gtgttatcat tgataatttt aatgagcaaa agaaaaaagc aggtggatca ttagaaatgt 4801 tcatgacaga agatcagaaa aagtactata atgctatgaa aaagatgggc tctaaaaaac 4861 cattaaaagc cattccaaga ccaaggtggc gtccacaagc aatagtcttt gaaatagtaa 4921 ccgataagaa attcgatata gtcataatgt tattcattgg tctgaacatg ttcaccatga 4981 cactcgatcg ttacgatgcg tcggacacgt acaacgcggt ccttgactat ctcaatgcga 5041 tattcgtagt tattttcagt tccgaatgtc tattaaaaat attcgcttta cgatatcact 5101 attttattga gccatggaat ttatttgatg tagtagttgt cattttatcc atcttaggtc 5161 tcgtacttag cgatattatc gagaaatact tcgtatcgcc gacactgctc cgagtggtgc 5221 gcgtggccaa agtgggtcgc gtactgcgtc tggtgaaggg cgccaagggt atacgaacgc 5281 tgctgttcgc cctggccatg tcgctgccgg cgctgttcaa catctgcctg ctgctgttcc 5341 tggtcatgtt catcttcgcg atattcggca tgtcgttctt catgcatgtg aaggagaaga 5401 gcggcatcaa cgacgtctac aacttcaaga cgttcggaca gagcatgatc ctgctctttc 5461 agatgtctac ctcagccggt tgggatggtg tactcgacgc cattatcaat gaggaagcat 5521 gcgatccacc cgacaacgac aaaggctatc cgggcaattg tggttcagcg accgttggaa 5581 taacgtttct cctctcatac ctagttataa gctttttgat agttattaat atgtacattg 5641 ctgtcattct cgagaactat agtcaggcca ccgaggatgt gcaggagggt ctcaccgacg 5701 acgattacga tatgtactat gagatctggc aacagttcga tccggagggc acccagtaca 5761 tacgatacga ccagctgtcc gagttcctcg acgtgctgga gcccccgctc cagattcaca 5821 agcccaacaa gtacaaaatc atatcgatgg acatacccat ctgtcgcggt gacctcatgt 5881 actgtgtgga catactggac gcactgacca aagacttttt cgcgcgcaaa ggcaatccca 5941 ttgaggagac gggcgagatt ggtgagattg ccgccaggcc ggacaccgag ggctacgagc 6001 ccgtctcctc caccctctgg cgacagcggg aggagtactg tgcccgcctc attcaacatg 6061 cctggcgcaa gcataaaacg cgcgccgagg gcggtggtgc accgtccgac gcggaaggcg 6121 acggccccga agatggtgat gcgggtggcg gtggcggggc ggcgctgatg ctgggtgttc 6181 tggatgttcc agatgctgct ggcgatgcag caaccactgg ctcccatgac ggggcaacgg 6241 cactcgatcc cgagaccgat ccatcgggag taccggcggc agcggcggtg gccccacagc 6301 cagccggtga cggcggcgag ggaccggatg gaggagcaac agccgatccg cacgagagca 6361 atgtaaatag tccgacgatg gacggcgcga cggcgggcag cccgggcgca gggagcgctg 6421 gcagcactgg ccgacagacg gccgttctcg tggagagcga tgggtttgtg accaagaacg 6481 ggcacaaggt tgtaatacac tcgcgttcgc cgagcataac gtcgcgcacg gcggatgtct 6541 gagccaggcc tcgccccccc ctccaagatg cacgcgagta ttaggtgcag gtgcagatgc 6601 agtgcagtgg tggtgccaca acaacaacaa caacaacagc aggtgccact ggtagctgca 6661 attgcaactg caacagcagc aacaggaaga a