PREDICTED: Drosophila obscura sodium channel protein para
LOCUS XM_041592005 6691 bp mRNA linear INV 14-MAY-2021
(LOC111070739), transcript variant X43, mRNA.
ACCESSION XM_041592005
VERSION XM_041592005.1
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..6691
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..6691
/gene="LOC111070739"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 48 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 7 samples with support for all annotated
introns"
/db_xref="GeneID:111070739"
CDS 237..6542
/gene="LOC111070739"
/codon_start=1
/product="sodium channel protein para isoform X43"
/protein_id="XP_041447939.1"
/db_xref="GeneID:111070739"
/translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK
RAEGEVIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLEDIDPFYSNIL
TFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIITTILVNCILMI
MPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDFVVIALAYVTM
GIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFAL
MGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDGISFPLCGNIS
GAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDLYQLVLRAAGP
WHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIREAEEAAAAKA
AKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEKGNDDNNKEKM
SIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTYTIRNGRGRFGIPGSDRKPLVLS
TYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLGSRHSSYTSHQSRISYTSHGD
LLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTTCLDPNHKVEHRDFEIGLECTD
EAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDRGVSVYYFPTED
DDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQEWISLIVFDPFVELFITLCIVV
NTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATMKLCAMSPKYYFQEGWNIFDFI
IVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISIMGRTMGALGNLTFV
LCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNFTDFMHSFMIVFRVLCGEWIES
MWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGSSSLSAPTADNDTNKIAE
AFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSEHGDNELELGHDEILADGLIKK
GIKEATQLEVAIGDGMEFTIHGDMKNNKPKKSKYLNNATDDDTASINSYGSHKNRPFK
DESHKGSAETMEGEEKRDASKEDLGIDEELDEEGELEEGPLDGDIIIHANDEDILDEY
PADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAVITMILMSSLA
LALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVIV
MVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNV
LLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMN
FDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSF
FTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWR
PQAIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSSE
CLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGR
VLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGIND
VYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGNCGSATVGITF
LLSYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYI
RYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGN
PIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKTRAEGGGAPSD
AEGDGPEDGDAGGGGGAALMLGVLDVPDAAGDAATTGSHDGATALDPETDPSGVPAAA
AVAPQPAGDGGEGPDGGATADPHESNVNSPTMDGATAGSPGAGSAGSTGRQTAVLVES
DGFVTKNGHKVVIHSRSPSITSRTADV"
misc_feature 657..1511
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 1860..2360
/gene="LOC111070739"
/note="Cytoplasmic domain of voltage-gated Na+ ion
channel; Region: Na_trans_cytopl; pfam11933"
/db_xref="CDD:463401"
misc_feature 2589..3224
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 3300..3959
/gene="LOC111070739"
/note="Sodium ion transport-associated; Region:
Na_trans_assoc; pfam06512"
/db_xref="CDD:461936"
misc_feature 3969..4784
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 4752..4910
/gene="LOC111070739"
/note="Inactivation gate of the voltage-gated sodium
channel alpha subunits; Region: Na_channel_gate; cd13433"
/db_xref="CDD:240441"
misc_feature 4797..4808
/gene="LOC111070739"
/note="putative hydrophobic latch; other site"
/db_xref="CDD:240441"
misc_feature 4932..5684
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 5715..5858
/gene="LOC111070739"
/note="Voltage-dependent L-type calcium channel,
IQ-associated; Region: GPHH; pfam16905"
/db_xref="CDD:465306"
ORIGIN
1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca
61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg
121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac
181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga
241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg
301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg
361 aaagaaagag agccgaggga gaggtgatcc gatatgatga cgaggacgag gatgaaggtc
421 cacaaccgga tcctacactt gaacagggtg tgccaatacc tgttcgactg cagggcagct
481 tccctccgga attggcctcc actcccctcg aggatatcga tcccttctac agcaatatac
541 tgacattcgt agttgtaagc aaaggaaaag atatttttcg cttttctgca tcaaaagcaa
601 tgtggctgct cgatccattc aatccgatac gtcgtgtggc catttacatt ttagtgcatc
661 cactattttc gttattcatc attaccacaa ttctcgtcaa ctgcatcctg atgataatgc
721 cgacaacgcc cacagttgag tccactgagg tgatattcac cggaatctac acatttgaat
781 cagctgttaa agtgatggca cgaggtttca ttttatgccc gtttacgtat cttagagatg
841 catggaattg gctggacttc gtagtaatag ctttagctta tgtgaccatg ggtatagatt
901 taggtaatct tgcagccttg cgaacgttta gggtgctgcg agcgcttaaa accgtagcca
961 ttgtgccagg cttgaagacc attgtcggtg cggtcatcga atctgtaaag aatctgcgcg
1021 atgtgataat tttgacaatg ttctccctgt cggtgttcgc gctgatgggg ctgcaaatct
1081 acatgggcgt gctaacgcag aagtgcatca agaagttccc gctggacggc tcctggggca
1141 acctgaccga cgagaactgg gcctatcaca atagcaacaa ctctaattgg tattcggaag
1201 acgacggtat atcctttccg ttgtgcggta atatctctgg agcggggcaa tgtgaagacg
1261 attacgtgtg tctgcagggg ttcgggccga acccgaacta tggctacacc agtttcgatt
1321 cgttcggttg ggcgtttctg tccgccttcc ggctgatgac gcaggacttc tgggaggatc
1381 tgtatcagct ggtgttgcgt gccgcaggac cctggcacat gctgttcttt atagtcatca
1441 tcttcctagg ttcattctat cttgtgaatt tgattttggc cattgttgcc atgtcgtatg
1501 acgaattgca aaagaaggcc gaagaagaag aggctgccga agaggaggcg atacgtgaag
1561 ccgaggaagc tgccgccgcc aaagcagcca agctggagga gcgcgccaat gcgcaggccc
1621 aggccgccgc cgatgcagct gccgccgaag aggcggctct tcatccggag atggccaaga
1681 gtccgacgta ttcgtgcatc agctatgagc tatttgtggg cggcgagaaa ggcaacgatg
1741 acaacaacaa ggagaagatg tccatacgca gcgttgaggt ggagtcggag tcggtgagcg
1801 ttatacaaag acaaccagca cctaccacag cacaccaagc taccaaagtt cgtaaagtga
1861 gcacgtacac gatccggaat ggacgtggac gctttggtat acccggcagc gatcgcaagc
1921 cgttggtatt gtcaacatat caggatgctc agcagcactt gccctatgcc gatgattcga
1981 acgctgttac gcccatgtcc gaggagaacg gtgccattat agtgcccgtt tattatggaa
2041 atctaggctc caggcattca tcgtatactt cgcatcagtc cagaatatcg tatacctcac
2101 atggcgatct attgggcggc atggccgtca tgggcgtcag cacaatgacc aaggagagca
2161 aattgcgaaa tcgcaactca cgcaatcaat cagtgggcgc caccaatggc ggcaccacct
2221 gcctggaccc caatcacaag gtcgagcatc gcgacttcga aatcggtctg gagtgcacgg
2281 acgaagctgg caagattaaa catcatgaca atccttttat cgagcccgtc cagacacaaa
2341 cggtagtcga catgaaagat gtgatggtac tgaatgacat tatcgaacag gccgctggtc
2401 ggcacagtcg ggctagtgat cgcggtgtct ccgtttacta tttcccaaca gaggacgatg
2461 atgaggatgg gccgacatta aaagacaagg ccctcgaagc gctaatgaaa ggcatcgaag
2521 tgttttgtgt gtgggactgt tgctgggttt ggttgaaatt gcaggagtgg atatcgctga
2581 tcgtcttcga tccctttgtc gagctcttca tcacgctgtg cattgtggtc aacacgatgt
2641 tcatggccat ggaccatcac gacatgaaca aggagatgga acgcatcctt aagtgcggaa
2701 attatttctt cacggcaaca ttcgccattg aggcaaccat gaaactgtgc gccatgagcc
2761 ccaaatacta tttccaggag ggctggaaca tctttgactt catcattgtg gcactctcat
2821 tgctggagct gggcctcgag ggcgttcagg gcctctccgt cttgcgttcg tttcgtttgc
2881 tgcgtgtatt caaattggcc aagtcctggc caacacttaa tttactcatt tcgattatgg
2941 gacgcaccat gggcgctttg ggtaatctga catttgtact ttgcattatc atcttcatct
3001 ttgcggtgat gggaatgcaa ctgttcggaa agaattatca tgataacaag gatcgcttcc
3061 cggacggtga cctgccccgc tggaacttca ccgacttcat gcacagcttc atgatcgtgt
3121 ttcgggtgct atgcggcgag tggatcgagt ccatgtggga ctgtatgcac gtgggcgatg
3181 tatcgtgcat tccattcttc ttggccaccg ttgtcatcgg caatttagtg gttcttaacc
3241 ttttcttagc cctgcttttg tcaaattttg gttcatctag cttatcagcg ccgacagccg
3301 ataacgatac caataaaata gccgaggcct tcaatcgaat tgggcgattt aaaagttggg
3361 ttaagcgtaa tattgctgat tgtttcaagt taatacgtaa caaattgaca aatcaaataa
3421 gtgatcaacc atcagagcac ggcgacaacg agctggagct gggccacgac gagatactcg
3481 ccgacgggct catcaagaag ggcatcaagg aggcgacaca gctggaggtg gccatcggtg
3541 atggcatgga gttcacgata cacggcgaca tgaagaacaa caagccgaag aaatccaaat
3601 atctaaataa cgcaacggac gacgacactg ccagcattaa ctcatatggt agccataaga
3661 atcgaccatt caaggatgag agccacaagg gcagcgccga gacgatggag ggcgaggaga
3721 agcgggacgc cagcaaggag gatttaggta tcgatgagga gctcgacgag gagggcgaat
3781 tggaggaggg cccgctcgac ggcgatatca tcatacatgc caacgatgag gatatactcg
3841 atgaatatcc agctgattgc tgccccgatt cgtactataa gaaatttccg atcttagccg
3901 gtgatgatga ctcgccgttc tggcaaggat ggggcaattt acgactgaaa acttttcaat
3961 taattgaaaa taaatatttt gaaacagctg ttatcactat gattttaatg agtagcttag
4021 ctttggcatt agaagatgta catctgccac aaagacccat actgcaggat attttatact
4081 atatggacag aatatttacg gttatattct tcttggaaat gttaatcaag tggctggcgc
4141 tcggcttcaa agtgtacttc acgaacgcgt ggtgctggct cgatttcgtc attgtcatgg
4201 tatcgcttat caacttcgtt gcttcacttg ttggagctgg tggtattcaa gccttcaaga
4261 ctatgcgaac gttaagagca ctgagaccac tacgtgccat gtcccgtatg cagggcatga
4321 gggtcgtcgt taatgcgctg gtacaagcta taccgtccat cttcaatgtg ctattggtgt
4381 gtctaatatt ttggctaatt tttgccataa tgggtgtaca gctttttgct ggaaaatatt
4441 ttaagtgcga ggacatgaat ggcacgaagc tcagccacga gatcatacca aatcgcaatg
4501 cctgcgaaag cgagaactac acgtgggtga attcagcaat gaatttcgat catgtaggta
4561 acgcgtatct gtgccttttc caagtggcca ccttcaaagg ctggatacaa atcatgaacg
4621 atgctatcga ttcacgagag gtggacaagc agccaattcg tgaaacgaac atctacatgt
4681 atttatattt cgtattcttc atcatatttg gatcattttt cacactcaat ctgttcattg
4741 gtgttatcat tgataatttt aatgagcaaa agaaaaaagc aggtggatca ttagaaatgt
4801 tcatgacaga agatcagaaa aagtactata atgctatgaa aaagatgggc tctaaaaaac
4861 cattaaaagc cattccaaga ccaaggtggc gtccacaagc aatagtcttt gaaatagtaa
4921 ccgataagaa attcgatata gtcataatgt tattcattgg tctgaacatg ttcaccatga
4981 cactcgatcg ttacgatgcg tcggacacgt acaacgcggt ccttgactat ctcaatgcga
5041 tattcgtagt tattttcagt tccgaatgtc tattaaaaat attcgcttta cgatatcact
5101 attttattga gccatggaat ttatttgatg tagtagttgt cattttatcc atcttaggtc
5161 tcgtacttag cgatattatc gagaaatact tcgtatcgcc gacactgctc cgagtggtgc
5221 gcgtggccaa agtgggtcgc gtactgcgtc tggtgaaggg cgccaagggt atacgaacgc
5281 tgctgttcgc cctggccatg tcgctgccgg cgctgttcaa catctgcctg ctgctgttcc
5341 tggtcatgtt catcttcgcg atattcggca tgtcgttctt catgcatgtg aaggagaaga
5401 gcggcatcaa cgacgtctac aacttcaaga cgttcggaca gagcatgatc ctgctctttc
5461 agatgtctac ctcagccggt tgggatggtg tactcgacgc cattatcaat gaggaagcat
5521 gcgatccacc cgacaacgac aaaggctatc cgggcaattg tggttcagcg accgttggaa
5581 taacgtttct cctctcatac ctagttataa gctttttgat agttattaat atgtacattg
5641 ctgtcattct cgagaactat agtcaggcca ccgaggatgt gcaggagggt ctcaccgacg
5701 acgattacga tatgtactat gagatctggc aacagttcga tccggagggc acccagtaca
5761 tacgatacga ccagctgtcc gagttcctcg acgtgctgga gcccccgctc cagattcaca
5821 agcccaacaa gtacaaaatc atatcgatgg acatacccat ctgtcgcggt gacctcatgt
5881 actgtgtgga catactggac gcactgacca aagacttttt cgcgcgcaaa ggcaatccca
5941 ttgaggagac gggcgagatt ggtgagattg ccgccaggcc ggacaccgag ggctacgagc
6001 ccgtctcctc caccctctgg cgacagcggg aggagtactg tgcccgcctc attcaacatg
6061 cctggcgcaa gcataaaacg cgcgccgagg gcggtggtgc accgtccgac gcggaaggcg
6121 acggccccga agatggtgat gcgggtggcg gtggcggggc ggcgctgatg ctgggtgttc
6181 tggatgttcc agatgctgct ggcgatgcag caaccactgg ctcccatgac ggggcaacgg
6241 cactcgatcc cgagaccgat ccatcgggag taccggcggc agcggcggtg gccccacagc
6301 cagccggtga cggcggcgag ggaccggatg gaggagcaac agccgatccg cacgagagca
6361 atgtaaatag tccgacgatg gacggcgcga cggcgggcag cccgggcgca gggagcgctg
6421 gcagcactgg ccgacagacg gccgttctcg tggagagcga tgggtttgtg accaagaacg
6481 ggcacaaggt tgtaatacac tcgcgttcgc cgagcataac gtcgcgcacg gcggatgtct
6541 gagccaggcc tcgccccccc ctccaagatg cacgcgagta ttaggtgcag gtgcagatgc
6601 agtgcagtgg tggtgccaca acaacaacaa caacaacagc aggtgccact ggtagctgca
6661 attgcaactg caacagcagc aacaggaaga a