PREDICTED: Drosophila obscura sodium channel protein para
LOCUS XM_041592003 6760 bp mRNA linear INV 14-MAY-2021
(LOC111070739), transcript variant X32, mRNA.
ACCESSION XM_041592003
VERSION XM_041592003.1
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..6760
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..6760
/gene="LOC111070739"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 52 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 7 samples with support for all annotated
introns"
/db_xref="GeneID:111070739"
CDS 237..6611
/gene="LOC111070739"
/codon_start=1
/product="sodium channel protein para isoform X32"
/protein_id="XP_041447937.1"
/db_xref="GeneID:111070739"
/translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK
RAEGEPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLE
DIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIIT
TILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDF
VVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIIL
TMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDG
ISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDL
YQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIR
EAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEK
GNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNIR
RGSRSSHKYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGA
IIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQ
SVGATNGGTTCLDPNHKVEHRDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDV
MVLNDIIEQAAGRHSRASDRGEDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKL
QEWISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEA
TMKLCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSW
PTLNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRW
NFTDFMHSFMIVFRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALL
LSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQP
SEHGDNELELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNNKPKKSKYL
NNATDDDTASINSYGSHKNRPFKDESHKGSAETMEGEEKRDASKEDLGIDEELDEEGE
LEEGPLDGDIIIHANDEDILDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKT
FQLIENKYFETAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLI
KWLALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAM
SRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLS
HEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDK
QPIRETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKK
YYNAMKKMGSKKPLKAIPRPRWRPQAIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYD
ASDTYNAVLDYLNAIFVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLS
DIIEKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLV
MFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEA
CDPPDNDKGYPGNCGSATVGITFLLSYLVISFLIVINMYIAVILENYSQATEDVQEGL
TDDDYDMYYEIWQQFDPEGTQYIRYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICR
GDLMYCVDILDALTKDFFARKGNPIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYC
ARLIQHAWRKHKTRAEGGGAPSDAEGDGPEDGDAGGGGGAALMLGVLDVPDAAGDAAT
TGSHDGATALDPETDPSGVPAAAAVAPQPAGDGGEGPDGGATADPHESNVNSPTMDGA
TAGSPGAGSAGSTGRQTAVLVESDGFVTKNGHKVVIHSRSPSITSRTADV"
misc_feature 687..1541
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 1896..2453
/gene="LOC111070739"
/note="Cytoplasmic domain of voltage-gated Na+ ion
channel; Region: Na_trans_cytopl; pfam11933"
/db_xref="CDD:463401"
misc_feature 2658..3293
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 3369..4028
/gene="LOC111070739"
/note="Sodium ion transport-associated; Region:
Na_trans_assoc; pfam06512"
/db_xref="CDD:461936"
misc_feature 4038..4853
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 4821..4979
/gene="LOC111070739"
/note="Inactivation gate of the voltage-gated sodium
channel alpha subunits; Region: Na_channel_gate; cd13433"
/db_xref="CDD:240441"
misc_feature 4866..4877
/gene="LOC111070739"
/note="putative hydrophobic latch; other site"
/db_xref="CDD:240441"
misc_feature 5001..5753
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 5784..5927
/gene="LOC111070739"
/note="Voltage-dependent L-type calcium channel,
IQ-associated; Region: GPHH; pfam16905"
/db_xref="CDD:465306"
ORIGIN
1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca
61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg
121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac
181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga
241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg
301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg
361 aaagaaagag agccgaggga gagccgcaat atggtcgcaa gaaaaaacaa aaagaaatcc
421 gatatgatga cgaggacgag gatgaaggtc cacaaccgga tcctacactt gaacagggtg
481 tgccaatacc tgttcgactg cagggcagct tccctccgga attggcctcc actcccctcg
541 aggatatcga tcccttctac agcaatatac tgacattcgt agttgtaagc aaaggaaaag
601 atatttttcg cttttctgca tcaaaagcaa tgtggctgct cgatccattc aatccgatac
661 gtcgtgtggc catttacatt ttagtgcatc cactattttc gttattcatc attaccacaa
721 ttctcgtcaa ctgcatcctg atgataatgc cgacaacgcc cacagttgag tccactgagg
781 tgatattcac cggaatctac acatttgaat cagctgttaa agtgatggca cgaggtttca
841 ttttatgccc gtttacgtat cttagagatg catggaattg gctggacttc gtagtaatag
901 ctttagctta tgtgaccatg ggtatagatt taggtaatct tgcagccttg cgaacgttta
961 gggtgctgcg agcgcttaaa accgtagcca ttgtgccagg cttgaagacc attgtcggtg
1021 cggtcatcga atctgtaaag aatctgcgcg atgtgataat tttgacaatg ttctccctgt
1081 cggtgttcgc gctgatgggg ctgcaaatct acatgggcgt gctaacgcag aagtgcatca
1141 agaagttccc gctggacggc tcctggggca acctgaccga cgagaactgg gcctatcaca
1201 atagcaacaa ctctaattgg tattcggaag acgacggtat atcctttccg ttgtgcggta
1261 atatctctgg agcggggcaa tgtgaagacg attacgtgtg tctgcagggg ttcgggccga
1321 acccgaacta tggctacacc agtttcgatt cgttcggttg ggcgtttctg tccgccttcc
1381 ggctgatgac gcaggacttc tgggaggatc tgtatcagct ggtgttgcgt gccgcaggac
1441 cctggcacat gctgttcttt atagtcatca tcttcctagg ttcattctat cttgtgaatt
1501 tgattttggc cattgttgcc atgtcgtatg acgaattgca aaagaaggcc gaagaagaag
1561 aggctgccga agaggaggcg atacgtgaag ccgaggaagc tgccgccgcc aaagcagcca
1621 agctggagga gcgcgccaat gcgcaggccc aggccgccgc cgatgcagct gccgccgaag
1681 aggcggctct tcatccggag atggccaaga gtccgacgta ttcgtgcatc agctatgagc
1741 tatttgtggg cggcgagaaa ggcaacgatg acaacaacaa ggagaagatg tccatacgca
1801 gcgttgaggt ggagtcggag tcggtgagcg ttatacaaag acaaccagca cctaccacag
1861 cacaccaagc taccaaagtt cgtaaagtga gcacgacatc cttatcctta cctggttcac
1921 cgtttaacat acgcagggga tcacgtagtt ctcacaagta cacgatccgg aatggacgtg
1981 gacgctttgg tatacccggc agcgatcgca agccgttggt attgtcaaca tatcaggatg
2041 ctcagcagca cttgccctat gccgatgatt cgaacgctgt tacgcccatg tccgaggaga
2101 acggtgccat tatagtgccc gtttattatg gaaatctagg ctccaggcat tcatcgtata
2161 cttcgcatca gtccagaata tcgtatacct cacatggcga tctattgggc ggcatggccg
2221 tcatgggcgt cagcacaatg accaaggaga gcaaattgcg aaatcgcaac tcacgcaatc
2281 aatcagtggg cgccaccaat ggcggcacca cctgcctgga ccccaatcac aaggtcgagc
2341 atcgcgactt cgaaatcggt ctggagtgca cggacgaagc tggcaagatt aaacatcatg
2401 acaatccttt tatcgagccc gtccagacac aaacggtagt cgacatgaaa gatgtgatgg
2461 tactgaatga cattatcgaa caggccgctg gtcggcacag tcgggctagt gatcgcggtg
2521 aggacgatga tgaggatggg ccgacattaa aagacaaggc cctcgaagcg ctaatgaaag
2581 gcatcgaagt gttttgtgtg tgggactgtt gctgggtttg gttgaaattg caggagtgga
2641 tatcgctgat cgtcttcgat ccctttgtcg agctcttcat cacgctgtgc attgtggtca
2701 acacgatgtt catggccatg gaccatcacg acatgaacaa ggagatggaa cgcatcctta
2761 agtgcggaaa ttatttcttc acggcaacat tcgccattga ggcaaccatg aaactgtgcg
2821 ccatgagccc caaatactat ttccaggagg gctggaacat ctttgacttc atcattgtgg
2881 cactctcatt gctggagctg ggcctcgagg gcgttcaggg cctctccgtc ttgcgttcgt
2941 ttcgtttgct gcgtgtattc aaattggcca agtcctggcc aacacttaat ttactcattt
3001 cgattatggg acgcaccatg ggcgctttgg gtaatctgac atttgtactt tgcattatca
3061 tcttcatctt tgcggtgatg ggaatgcaac tgttcggaaa gaattatcat gataacaagg
3121 atcgcttccc ggacggtgac ctgccccgct ggaacttcac cgacttcatg cacagcttca
3181 tgatcgtgtt tcgggtgcta tgcggcgagt ggatcgagtc catgtgggac tgtatgcacg
3241 tgggcgatgt atcgtgcatt ccattcttct tggccaccgt tgtcatcggc aatttagtgg
3301 ttcttaacct tttcttagcc ctgcttttgt caaattttgg ttcatctagc ttatcagcgc
3361 cgacagccga taacgatacc aataaaatag ccgaggcctt caatcgaatt gggcgattta
3421 aaagttgggt taagcgtaat attgctgatt gtttcaagtt aatacgtaac aaattgacaa
3481 atcaaataag tgatcaacca tcagagcacg gcgacaacga gctggagctg ggccacgacg
3541 agatactcgc cgacgggctc atcaagaagg gcatcaagga ggcgacacag ctggaggtgg
3601 ccatcggtga tggcatggag ttcacgatac acggcgacat gaagaacaac aagccgaaga
3661 aatccaaata tctaaataac gcaacggacg acgacactgc cagcattaac tcatatggta
3721 gccataagaa tcgaccattc aaggatgaga gccacaaggg cagcgccgag acgatggagg
3781 gcgaggagaa gcgggacgcc agcaaggagg atttaggtat cgatgaggag ctcgacgagg
3841 agggcgaatt ggaggagggc ccgctcgacg gcgatatcat catacatgcc aacgatgagg
3901 atatactcga tgaatatcca gctgattgct gccccgattc gtactataag aaatttccga
3961 tcttagccgg tgatgatgac tcgccgttct ggcaaggatg gggcaattta cgactgaaaa
4021 cttttcaatt aattgaaaat aaatattttg aaacagctgt tatcactatg attttaatga
4081 gtagcttagc tttggcatta gaagatgtac atctgccaca aagacccata ctgcaggata
4141 ttttatacta tatggacaga atatttacgg ttatattctt cttggaaatg ttaatcaagt
4201 ggctggcgct cggcttcaaa gtgtacttca cgaacgcgtg gtgctggctc gatttcgtca
4261 ttgtcatggt atcgcttatc aacttcgttg cttcacttgt tggagctggt ggtattcaag
4321 ccttcaagac tatgcgaacg ttaagagcac tgagaccact acgtgccatg tcccgtatgc
4381 agggcatgag ggtcgtcgtt aatgcgctgg tacaagctat accgtccatc ttcaatgtgc
4441 tattggtgtg tctaatattt tggctaattt ttgccataat gggtgtacag ctttttgctg
4501 gaaaatattt taagtgcgag gacatgaatg gcacgaagct cagccacgag atcataccaa
4561 atcgcaatgc ctgcgaaagc gagaactaca cgtgggtgaa ttcagcaatg aatttcgatc
4621 atgtaggtaa cgcgtatctg tgccttttcc aagtggccac cttcaaaggc tggatacaaa
4681 tcatgaacga tgctatcgat tcacgagagg tggacaagca gccaattcgt gaaacgaaca
4741 tctacatgta tttatatttc gtattcttca tcatatttgg atcatttttc acactcaatc
4801 tgttcattgg tgttatcatt gataatttta atgagcaaaa gaaaaaagca ggtggatcat
4861 tagaaatgtt catgacagaa gatcagaaaa agtactataa tgctatgaaa aagatgggct
4921 ctaaaaaacc attaaaagcc attccaagac caaggtggcg tccacaagca atagtctttg
4981 aaatagtaac cgataagaaa ttcgatatag tcataatgtt attcattggt ctgaacatgt
5041 tcaccatgac actcgatcgt tacgatgcgt cggacacgta caacgcggtc cttgactatc
5101 tcaatgcgat attcgtagtt attttcagtt ccgaatgtct attaaaaata ttcgctttac
5161 gatatcacta ttttattgag ccatggaatt tatttgatgt agtagttgtc attttatcca
5221 tcttaggtct cgtacttagc gatattatcg agaaatactt cgtatcgccg acactgctcc
5281 gagtggtgcg cgtggccaaa gtgggtcgcg tactgcgtct ggtgaagggc gccaagggta
5341 tacgaacgct gctgttcgcc ctggccatgt cgctgccggc gctgttcaac atctgcctgc
5401 tgctgttcct ggtcatgttc atcttcgcga tattcggcat gtcgttcttc atgcatgtga
5461 aggagaagag cggcatcaac gacgtctaca acttcaagac gttcggacag agcatgatcc
5521 tgctctttca gatgtctacc tcagccggtt gggatggtgt actcgacgcc attatcaatg
5581 aggaagcatg cgatccaccc gacaacgaca aaggctatcc gggcaattgt ggttcagcga
5641 ccgttggaat aacgtttctc ctctcatacc tagttataag ctttttgata gttattaata
5701 tgtacattgc tgtcattctc gagaactata gtcaggccac cgaggatgtg caggagggtc
5761 tcaccgacga cgattacgat atgtactatg agatctggca acagttcgat ccggagggca
5821 cccagtacat acgatacgac cagctgtccg agttcctcga cgtgctggag cccccgctcc
5881 agattcacaa gcccaacaag tacaaaatca tatcgatgga catacccatc tgtcgcggtg
5941 acctcatgta ctgtgtggac atactggacg cactgaccaa agactttttc gcgcgcaaag
6001 gcaatcccat tgaggagacg ggcgagattg gtgagattgc cgccaggccg gacaccgagg
6061 gctacgagcc cgtctcctcc accctctggc gacagcggga ggagtactgt gcccgcctca
6121 ttcaacatgc ctggcgcaag cataaaacgc gcgccgaggg cggtggtgca ccgtccgacg
6181 cggaaggcga cggccccgaa gatggtgatg cgggtggcgg tggcggggcg gcgctgatgc
6241 tgggtgttct ggatgttcca gatgctgctg gcgatgcagc aaccactggc tcccatgacg
6301 gggcaacggc actcgatccc gagaccgatc catcgggagt accggcggca gcggcggtgg
6361 ccccacagcc agccggtgac ggcggcgagg gaccggatgg aggagcaaca gccgatccgc
6421 acgagagcaa tgtaaatagt ccgacgatgg acggcgcgac ggcgggcagc ccgggcgcag
6481 ggagcgctgg cagcactggc cgacagacgg ccgttctcgt ggagagcgat gggtttgtga
6541 ccaagaacgg gcacaaggtt gtaatacact cgcgttcgcc gagcataacg tcgcgcacgg
6601 cggatgtctg agccaggcct cgcccccccc tccaagatgc acgcgagtat taggtgcagg
6661 tgcagatgca gtgcagtggt ggtgccacaa caacaacaac aacaacagca ggtgccactg
6721 gtagctgcaa ttgcaactgc aacagcagca acaggaagaa