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LOCUS XM_041592003 6760 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X32, mRNA. ACCESSION XM_041592003 VERSION XM_041592003.1 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6760 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6760 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 52 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6611 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X32" /protein_id="XP_041447937.1" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLE DIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIIT TILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDF VVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIIL TMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDG ISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDL YQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIR EAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEK GNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNIR RGSRSSHKYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGA IIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQ SVGATNGGTTCLDPNHKVEHRDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDV MVLNDIIEQAAGRHSRASDRGEDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKL QEWISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEA TMKLCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSW PTLNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRW NFTDFMHSFMIVFRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALL LSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQP SEHGDNELELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNNKPKKSKYL NNATDDDTASINSYGSHKNRPFKDESHKGSAETMEGEEKRDASKEDLGIDEELDEEGE LEEGPLDGDIIIHANDEDILDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKT FQLIENKYFETAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLI KWLALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAM SRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLS HEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDK QPIRETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKK YYNAMKKMGSKKPLKAIPRPRWRPQAIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYD ASDTYNAVLDYLNAIFVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLS DIIEKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLV MFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEA CDPPDNDKGYPGNCGSATVGITFLLSYLVISFLIVINMYIAVILENYSQATEDVQEGL TDDDYDMYYEIWQQFDPEGTQYIRYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICR GDLMYCVDILDALTKDFFARKGNPIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYC ARLIQHAWRKHKTRAEGGGAPSDAEGDGPEDGDAGGGGGAALMLGVLDVPDAAGDAAT TGSHDGATALDPETDPSGVPAAAAVAPQPAGDGGEGPDGGATADPHESNVNSPTMDGA TAGSPGAGSAGSTGRQTAVLVESDGFVTKNGHKVVIHSRSPSITSRTADV" misc_feature 687..1541 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1896..2453 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2658..3293 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3369..4028 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4038..4853 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4821..4979 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 4866..4877 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 5001..5753 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5784..5927 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gagccgcaat atggtcgcaa gaaaaaacaa aaagaaatcc 421 gatatgatga cgaggacgag gatgaaggtc cacaaccgga tcctacactt gaacagggtg 481 tgccaatacc tgttcgactg cagggcagct tccctccgga attggcctcc actcccctcg 541 aggatatcga tcccttctac agcaatatac tgacattcgt agttgtaagc aaaggaaaag 601 atatttttcg cttttctgca tcaaaagcaa tgtggctgct cgatccattc aatccgatac 661 gtcgtgtggc catttacatt ttagtgcatc cactattttc gttattcatc attaccacaa 721 ttctcgtcaa ctgcatcctg atgataatgc cgacaacgcc cacagttgag tccactgagg 781 tgatattcac cggaatctac acatttgaat cagctgttaa agtgatggca cgaggtttca 841 ttttatgccc gtttacgtat cttagagatg catggaattg gctggacttc gtagtaatag 901 ctttagctta tgtgaccatg ggtatagatt taggtaatct tgcagccttg cgaacgttta 961 gggtgctgcg agcgcttaaa accgtagcca ttgtgccagg cttgaagacc attgtcggtg 1021 cggtcatcga atctgtaaag aatctgcgcg atgtgataat tttgacaatg ttctccctgt 1081 cggtgttcgc gctgatgggg ctgcaaatct acatgggcgt gctaacgcag aagtgcatca 1141 agaagttccc gctggacggc tcctggggca acctgaccga cgagaactgg gcctatcaca 1201 atagcaacaa ctctaattgg tattcggaag acgacggtat atcctttccg ttgtgcggta 1261 atatctctgg agcggggcaa tgtgaagacg attacgtgtg tctgcagggg ttcgggccga 1321 acccgaacta tggctacacc agtttcgatt cgttcggttg ggcgtttctg tccgccttcc 1381 ggctgatgac gcaggacttc tgggaggatc tgtatcagct ggtgttgcgt gccgcaggac 1441 cctggcacat gctgttcttt atagtcatca tcttcctagg ttcattctat cttgtgaatt 1501 tgattttggc cattgttgcc atgtcgtatg acgaattgca aaagaaggcc gaagaagaag 1561 aggctgccga agaggaggcg atacgtgaag ccgaggaagc tgccgccgcc aaagcagcca 1621 agctggagga gcgcgccaat gcgcaggccc aggccgccgc cgatgcagct gccgccgaag 1681 aggcggctct tcatccggag atggccaaga gtccgacgta ttcgtgcatc agctatgagc 1741 tatttgtggg cggcgagaaa ggcaacgatg acaacaacaa ggagaagatg tccatacgca 1801 gcgttgaggt ggagtcggag tcggtgagcg ttatacaaag acaaccagca cctaccacag 1861 cacaccaagc taccaaagtt cgtaaagtga gcacgacatc cttatcctta cctggttcac 1921 cgtttaacat acgcagggga tcacgtagtt ctcacaagta cacgatccgg aatggacgtg 1981 gacgctttgg tatacccggc agcgatcgca agccgttggt attgtcaaca tatcaggatg 2041 ctcagcagca cttgccctat gccgatgatt cgaacgctgt tacgcccatg tccgaggaga 2101 acggtgccat tatagtgccc gtttattatg gaaatctagg ctccaggcat tcatcgtata 2161 cttcgcatca gtccagaata tcgtatacct cacatggcga tctattgggc ggcatggccg 2221 tcatgggcgt cagcacaatg accaaggaga gcaaattgcg aaatcgcaac tcacgcaatc 2281 aatcagtggg cgccaccaat ggcggcacca cctgcctgga ccccaatcac aaggtcgagc 2341 atcgcgactt cgaaatcggt ctggagtgca cggacgaagc tggcaagatt aaacatcatg 2401 acaatccttt tatcgagccc gtccagacac aaacggtagt cgacatgaaa gatgtgatgg 2461 tactgaatga cattatcgaa caggccgctg gtcggcacag tcgggctagt gatcgcggtg 2521 aggacgatga tgaggatggg ccgacattaa aagacaaggc cctcgaagcg ctaatgaaag 2581 gcatcgaagt gttttgtgtg tgggactgtt gctgggtttg gttgaaattg caggagtgga 2641 tatcgctgat cgtcttcgat ccctttgtcg agctcttcat cacgctgtgc attgtggtca 2701 acacgatgtt catggccatg gaccatcacg acatgaacaa ggagatggaa cgcatcctta 2761 agtgcggaaa ttatttcttc acggcaacat tcgccattga ggcaaccatg aaactgtgcg 2821 ccatgagccc caaatactat ttccaggagg gctggaacat ctttgacttc atcattgtgg 2881 cactctcatt gctggagctg ggcctcgagg gcgttcaggg cctctccgtc ttgcgttcgt 2941 ttcgtttgct gcgtgtattc aaattggcca agtcctggcc aacacttaat ttactcattt 3001 cgattatggg acgcaccatg ggcgctttgg gtaatctgac atttgtactt tgcattatca 3061 tcttcatctt tgcggtgatg ggaatgcaac tgttcggaaa gaattatcat gataacaagg 3121 atcgcttccc ggacggtgac ctgccccgct ggaacttcac cgacttcatg cacagcttca 3181 tgatcgtgtt tcgggtgcta tgcggcgagt ggatcgagtc catgtgggac tgtatgcacg 3241 tgggcgatgt atcgtgcatt ccattcttct tggccaccgt tgtcatcggc aatttagtgg 3301 ttcttaacct tttcttagcc ctgcttttgt caaattttgg ttcatctagc ttatcagcgc 3361 cgacagccga taacgatacc aataaaatag ccgaggcctt caatcgaatt gggcgattta 3421 aaagttgggt taagcgtaat attgctgatt gtttcaagtt aatacgtaac aaattgacaa 3481 atcaaataag tgatcaacca tcagagcacg gcgacaacga gctggagctg ggccacgacg 3541 agatactcgc cgacgggctc atcaagaagg gcatcaagga ggcgacacag ctggaggtgg 3601 ccatcggtga tggcatggag ttcacgatac acggcgacat gaagaacaac aagccgaaga 3661 aatccaaata tctaaataac gcaacggacg acgacactgc cagcattaac tcatatggta 3721 gccataagaa tcgaccattc aaggatgaga gccacaaggg cagcgccgag acgatggagg 3781 gcgaggagaa gcgggacgcc agcaaggagg atttaggtat cgatgaggag ctcgacgagg 3841 agggcgaatt ggaggagggc ccgctcgacg gcgatatcat catacatgcc aacgatgagg 3901 atatactcga tgaatatcca gctgattgct gccccgattc gtactataag aaatttccga 3961 tcttagccgg tgatgatgac tcgccgttct ggcaaggatg gggcaattta cgactgaaaa 4021 cttttcaatt aattgaaaat aaatattttg aaacagctgt tatcactatg attttaatga 4081 gtagcttagc tttggcatta gaagatgtac atctgccaca aagacccata ctgcaggata 4141 ttttatacta tatggacaga atatttacgg ttatattctt cttggaaatg ttaatcaagt 4201 ggctggcgct cggcttcaaa gtgtacttca cgaacgcgtg gtgctggctc gatttcgtca 4261 ttgtcatggt atcgcttatc aacttcgttg cttcacttgt tggagctggt ggtattcaag 4321 ccttcaagac tatgcgaacg ttaagagcac tgagaccact acgtgccatg tcccgtatgc 4381 agggcatgag ggtcgtcgtt aatgcgctgg tacaagctat accgtccatc ttcaatgtgc 4441 tattggtgtg tctaatattt tggctaattt ttgccataat gggtgtacag ctttttgctg 4501 gaaaatattt taagtgcgag gacatgaatg gcacgaagct cagccacgag atcataccaa 4561 atcgcaatgc ctgcgaaagc gagaactaca cgtgggtgaa ttcagcaatg aatttcgatc 4621 atgtaggtaa cgcgtatctg tgccttttcc aagtggccac cttcaaaggc tggatacaaa 4681 tcatgaacga tgctatcgat tcacgagagg tggacaagca gccaattcgt gaaacgaaca 4741 tctacatgta tttatatttc gtattcttca tcatatttgg atcatttttc acactcaatc 4801 tgttcattgg tgttatcatt gataatttta atgagcaaaa gaaaaaagca ggtggatcat 4861 tagaaatgtt catgacagaa gatcagaaaa agtactataa tgctatgaaa aagatgggct 4921 ctaaaaaacc attaaaagcc attccaagac caaggtggcg tccacaagca atagtctttg 4981 aaatagtaac cgataagaaa ttcgatatag tcataatgtt attcattggt ctgaacatgt 5041 tcaccatgac actcgatcgt tacgatgcgt cggacacgta caacgcggtc cttgactatc 5101 tcaatgcgat attcgtagtt attttcagtt ccgaatgtct attaaaaata ttcgctttac 5161 gatatcacta ttttattgag ccatggaatt tatttgatgt agtagttgtc attttatcca 5221 tcttaggtct cgtacttagc gatattatcg agaaatactt cgtatcgccg acactgctcc 5281 gagtggtgcg cgtggccaaa gtgggtcgcg tactgcgtct ggtgaagggc gccaagggta 5341 tacgaacgct gctgttcgcc ctggccatgt cgctgccggc gctgttcaac atctgcctgc 5401 tgctgttcct ggtcatgttc atcttcgcga tattcggcat gtcgttcttc atgcatgtga 5461 aggagaagag cggcatcaac gacgtctaca acttcaagac gttcggacag agcatgatcc 5521 tgctctttca gatgtctacc tcagccggtt gggatggtgt actcgacgcc attatcaatg 5581 aggaagcatg cgatccaccc gacaacgaca aaggctatcc gggcaattgt ggttcagcga 5641 ccgttggaat aacgtttctc ctctcatacc tagttataag ctttttgata gttattaata 5701 tgtacattgc tgtcattctc gagaactata gtcaggccac cgaggatgtg caggagggtc 5761 tcaccgacga cgattacgat atgtactatg agatctggca acagttcgat ccggagggca 5821 cccagtacat acgatacgac cagctgtccg agttcctcga cgtgctggag cccccgctcc 5881 agattcacaa gcccaacaag tacaaaatca tatcgatgga catacccatc tgtcgcggtg 5941 acctcatgta ctgtgtggac atactggacg cactgaccaa agactttttc gcgcgcaaag 6001 gcaatcccat tgaggagacg ggcgagattg gtgagattgc cgccaggccg gacaccgagg 6061 gctacgagcc cgtctcctcc accctctggc gacagcggga ggagtactgt gcccgcctca 6121 ttcaacatgc ctggcgcaag cataaaacgc gcgccgaggg cggtggtgca ccgtccgacg 6181 cggaaggcga cggccccgaa gatggtgatg cgggtggcgg tggcggggcg gcgctgatgc 6241 tgggtgttct ggatgttcca gatgctgctg gcgatgcagc aaccactggc tcccatgacg 6301 gggcaacggc actcgatccc gagaccgatc catcgggagt accggcggca gcggcggtgg 6361 ccccacagcc agccggtgac ggcggcgagg gaccggatgg aggagcaaca gccgatccgc 6421 acgagagcaa tgtaaatagt ccgacgatgg acggcgcgac ggcgggcagc ccgggcgcag 6481 ggagcgctgg cagcactggc cgacagacgg ccgttctcgt ggagagcgat gggtttgtga 6541 ccaagaacgg gcacaaggtt gtaatacact cgcgttcgcc gagcataacg tcgcgcacgg 6601 cggatgtctg agccaggcct cgcccccccc tccaagatgc acgcgagtat taggtgcagg 6661 tgcagatgca gtgcagtggt ggtgccacaa caacaacaac aacaacagca ggtgccactg 6721 gtagctgcaa ttgcaactgc aacagcagca acaggaagaa