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LOCUS XM_041592002 6802 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X23, mRNA. ACCESSION XM_041592002 VERSION XM_041592002.1 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6802 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6802 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 52 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6653 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X23" /protein_id="XP_041447936.1" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLEDIDPFYSNILT FVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIITTILVNCILMIM PTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDFVVIALAYVTMG IDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALM GLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDGISFPLCGNISG AGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDLYQLVLRAAGPW HMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIREAEEAAAAKAA KLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEKGNDDNNKEKMS IRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTYTIRNGRGRFGIPGSDRKPLVLST YQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLGSRHSSYTSHQSRISYTSHGDL LGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTTCLDPNHKVEHRDFEIGLECTDE AGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDRGVSVYYFPTEDD DEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQEWISLIVFDPFVELFITLCIVVN TMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATMKLCAMSPKYYFQEGWNIFDFII VALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISIMGRTMGALGNLTFVL CIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNFTDFMHSFMIVFRVLCGEWIESM WDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGSSSLSAPTADNDTNKIAEA FNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSGERTNQISWIWSEEHGDNELELG HDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNNKPKKSKYLNNATMIGNSIN HQDNRLEHELNHRGLSLQDDDTASINSYGSHKNRPFKDESHKGSAETMEGEEKRDASK EDLGIDEELDEEGELEEGPLDGDIIIHANDEDILDEYPADCCPDSYYKKFPILAGDDD SPFWQGWGNLRLKTFQLIENKYFETAVITMILMSSLALALEDVHLPQRPILQDILYYM DRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGIQAFK TMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAG KYFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQVATFKGWI QIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDNFNEQKKKA GGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRPQAIVFEIVTDKKFDIVIMLF IGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSSECLLKIFALRYHYFIEPWNLFD VVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMS LPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQMSTSA GWDGVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLLSYLVISFLIVINMYIAVIL ENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEFLDVLEPPLQIHKP NKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGNPIEETGEIGEIAARPDTEGYE PVSSTLWRQREEYCARLIQHAWRKHKTRAEGGGAPSDAEGDGPEDGDAGGGGGAALML GVLDVPDAAGDAATTGSHDGATALDPETDPSGVPAAAAVAPQPAGDGGEGPDGGATAD PHESNVNSPTMDGATAGSPGAGSAGSTGRQTAVLVESDGFVTKNGHKVVIHSRSPSIT SRTADV" misc_feature 654..1508 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1857..2357 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2586..3221 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3297..4070 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4080..4895 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4863..5021 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 4908..4919 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 5043..5795 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5826..5969 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gagatccgat atgatgacga ggacgaggat gaaggtccac 421 aaccggatcc tacacttgaa cagggtgtgc caatacctgt tcgactgcag ggcagcttcc 481 ctccggaatt ggcctccact cccctcgagg atatcgatcc cttctacagc aatatactga 541 cattcgtagt tgtaagcaaa ggaaaagata tttttcgctt ttctgcatca aaagcaatgt 601 ggctgctcga tccattcaat ccgatacgtc gtgtggccat ttacatttta gtgcatccac 661 tattttcgtt attcatcatt accacaattc tcgtcaactg catcctgatg ataatgccga 721 caacgcccac agttgagtcc actgaggtga tattcaccgg aatctacaca tttgaatcag 781 ctgttaaagt gatggcacga ggtttcattt tatgcccgtt tacgtatctt agagatgcat 841 ggaattggct ggacttcgta gtaatagctt tagcttatgt gaccatgggt atagatttag 901 gtaatcttgc agccttgcga acgtttaggg tgctgcgagc gcttaaaacc gtagccattg 961 tgccaggctt gaagaccatt gtcggtgcgg tcatcgaatc tgtaaagaat ctgcgcgatg 1021 tgataatttt gacaatgttc tccctgtcgg tgttcgcgct gatggggctg caaatctaca 1081 tgggcgtgct aacgcagaag tgcatcaaga agttcccgct ggacggctcc tggggcaacc 1141 tgaccgacga gaactgggcc tatcacaata gcaacaactc taattggtat tcggaagacg 1201 acggtatatc ctttccgttg tgcggtaata tctctggagc ggggcaatgt gaagacgatt 1261 acgtgtgtct gcaggggttc gggccgaacc cgaactatgg ctacaccagt ttcgattcgt 1321 tcggttgggc gtttctgtcc gccttccggc tgatgacgca ggacttctgg gaggatctgt 1381 atcagctggt gttgcgtgcc gcaggaccct ggcacatgct gttctttata gtcatcatct 1441 tcctaggttc attctatctt gtgaatttga ttttggccat tgttgccatg tcgtatgacg 1501 aattgcaaaa gaaggccgaa gaagaagagg ctgccgaaga ggaggcgata cgtgaagccg 1561 aggaagctgc cgccgccaaa gcagccaagc tggaggagcg cgccaatgcg caggcccagg 1621 ccgccgccga tgcagctgcc gccgaagagg cggctcttca tccggagatg gccaagagtc 1681 cgacgtattc gtgcatcagc tatgagctat ttgtgggcgg cgagaaaggc aacgatgaca 1741 acaacaagga gaagatgtcc atacgcagcg ttgaggtgga gtcggagtcg gtgagcgtta 1801 tacaaagaca accagcacct accacagcac accaagctac caaagttcgt aaagtgagca 1861 cgtacacgat ccggaatgga cgtggacgct ttggtatacc cggcagcgat cgcaagccgt 1921 tggtattgtc aacatatcag gatgctcagc agcacttgcc ctatgccgat gattcgaacg 1981 ctgttacgcc catgtccgag gagaacggtg ccattatagt gcccgtttat tatggaaatc 2041 taggctccag gcattcatcg tatacttcgc atcagtccag aatatcgtat acctcacatg 2101 gcgatctatt gggcggcatg gccgtcatgg gcgtcagcac aatgaccaag gagagcaaat 2161 tgcgaaatcg caactcacgc aatcaatcag tgggcgccac caatggcggc accacctgcc 2221 tggaccccaa tcacaaggtc gagcatcgcg acttcgaaat cggtctggag tgcacggacg 2281 aagctggcaa gattaaacat catgacaatc cttttatcga gcccgtccag acacaaacgg 2341 tagtcgacat gaaagatgtg atggtactga atgacattat cgaacaggcc gctggtcggc 2401 acagtcgggc tagtgatcgc ggtgtctccg tttactattt cccaacagag gacgatgatg 2461 aggatgggcc gacattaaaa gacaaggccc tcgaagcgct aatgaaaggc atcgaagtgt 2521 tttgtgtgtg ggactgttgc tgggtttggt tgaaattgca ggagtggata tcgctgatcg 2581 tcttcgatcc ctttgtcgag ctcttcatca cgctgtgcat tgtggtcaac acgatgttca 2641 tggccatgga ccatcacgac atgaacaagg agatggaacg catccttaag tgcggaaatt 2701 atttcttcac ggcaacattc gccattgagg caaccatgaa actgtgcgcc atgagcccca 2761 aatactattt ccaggagggc tggaacatct ttgacttcat cattgtggca ctctcattgc 2821 tggagctggg cctcgagggc gttcagggcc tctccgtctt gcgttcgttt cgtttgctgc 2881 gtgtattcaa attggccaag tcctggccaa cacttaattt actcatttcg attatgggac 2941 gcaccatggg cgctttgggt aatctgacat ttgtactttg cattatcatc ttcatctttg 3001 cggtgatggg aatgcaactg ttcggaaaga attatcatga taacaaggat cgcttcccgg 3061 acggtgacct gccccgctgg aacttcaccg acttcatgca cagcttcatg atcgtgtttc 3121 gggtgctatg cggcgagtgg atcgagtcca tgtgggactg tatgcacgtg ggcgatgtat 3181 cgtgcattcc attcttcttg gccaccgttg tcatcggcaa tttagtggtt cttaaccttt 3241 tcttagccct gcttttgtca aattttggtt catctagctt atcagcgccg acagccgata 3301 acgataccaa taaaatagcc gaggccttca atcgaattgg gcgatttaaa agttgggtta 3361 agcgtaatat tgctgattgt ttcaagttaa tacgtaacaa attgacaaat caaataagtg 3421 atcaaccatc aggtgagagg accaaccaga tcagttggat ttggagcgaa gagcacggcg 3481 acaacgagct ggagctgggc cacgacgaga tactcgccga cgggctcatc aagaagggca 3541 tcaaggaggc gacacagctg gaggtggcca tcggtgatgg catggagttc acgatacacg 3601 gcgacatgaa gaacaacaag ccgaagaaat ccaaatatct aaataacgca acgatgattg 3661 gcaactcaat taaccaccaa gacaatagac tggaacacga gctaaaccat agaggtttgt 3721 ccttacagga cgacgacact gccagcatta actcatatgg tagccataag aatcgaccat 3781 tcaaggatga gagccacaag ggcagcgccg agacgatgga gggcgaggag aagcgggacg 3841 ccagcaagga ggatttaggt atcgatgagg agctcgacga ggagggcgaa ttggaggagg 3901 gcccgctcga cggcgatatc atcatacatg ccaacgatga ggatatactc gatgaatatc 3961 cagctgattg ctgccccgat tcgtactata agaaatttcc gatcttagcc ggtgatgatg 4021 actcgccgtt ctggcaagga tggggcaatt tacgactgaa aacttttcaa ttaattgaaa 4081 ataaatattt tgaaacagct gttatcacta tgattttaat gagtagctta gctttggcat 4141 tagaagatgt acatctgcca caaagaccca tactgcagga tattttatac tatatggaca 4201 gaatatttac ggttatattc ttcttggaaa tgttaatcaa gtggctggcg ctcggcttca 4261 aagtgtactt cacgaacgcg tggtgctggc tcgatttcgt cattgtcatg gtatcgctta 4321 tcaacttcgt tgcttcactt gttggagctg gtggtattca agccttcaag actatgcgaa 4381 cgttaagagc actgagacca ctacgtgcca tgtcccgtat gcagggcatg agggtcgtcg 4441 ttaatgcgct ggtacaagct ataccgtcca tcttcaatgt gctattggtg tgtctaatat 4501 tttggctaat ttttgccata atgggtgtac agctttttgc tggaaaatat tttaagtgcg 4561 aggacatgaa tggcacgaag ctcagccacg agatcatacc aaatcgcaat gcctgcgaaa 4621 gcgagaacta cacgtgggtg aattcagcaa tgaatttcga tcatgtaggt aacgcgtatc 4681 tgtgcctttt ccaagtggcc accttcaaag gctggataca aatcatgaac gatgctatcg 4741 attcacgaga ggtggacaag cagccaattc gtgaaacgaa catctacatg tatttatatt 4801 tcgtattctt catcatattt ggatcatttt tcacactcaa tctgttcatt ggtgttatca 4861 ttgataattt taatgagcaa aagaaaaaag caggtggatc attagaaatg ttcatgacag 4921 aagatcagaa aaagtactat aatgctatga aaaagatggg ctctaaaaaa ccattaaaag 4981 ccattccaag accaaggtgg cgtccacaag caatagtctt tgaaatagta accgataaga 5041 aattcgatat agtcataatg ttattcattg gtctgaacat gttcaccatg acactcgatc 5101 gttacgatgc gtcggacacg tacaacgcgg tccttgacta tctcaatgcg atattcgtag 5161 ttattttcag ttccgaatgt ctattaaaaa tattcgcttt acgatatcac tattttattg 5221 agccatggaa tttatttgat gtagtagttg tcattttatc catcttaggt ctcgtactta 5281 gcgatattat cgagaaatac ttcgtatcgc cgacactgct ccgagtggtg cgcgtggcca 5341 aagtgggtcg cgtactgcgt ctggtgaagg gcgccaaggg tatacgaacg ctgctgttcg 5401 ccctggccat gtcgctgccg gcgctgttca acatctgcct gctgctgttc ctggtcatgt 5461 tcatcttcgc gatattcggc atgtcgttct tcatgcatgt gaaggagaag agcggcatca 5521 acgacgtcta caacttcaag acgttcggac agagcatgat cctgctcttt cagatgtcta 5581 cctcagccgg ttgggatggt gtactcgacg ccattatcaa tgaggaagca tgcgatccac 5641 ccgacaacga caaaggctat ccgggcaatt gtggttcagc gaccgttgga ataacgtttc 5701 tcctctcata cctagttata agctttttga tagttattaa tatgtacatt gctgtcattc 5761 tcgagaacta tagtcaggcc accgaggatg tgcaggaggg tctcaccgac gacgattacg 5821 atatgtacta tgagatctgg caacagttcg atccggaggg cacccagtac atacgatacg 5881 accagctgtc cgagttcctc gacgtgctgg agcccccgct ccagattcac aagcccaaca 5941 agtacaaaat catatcgatg gacataccca tctgtcgcgg tgacctcatg tactgtgtgg 6001 acatactgga cgcactgacc aaagactttt tcgcgcgcaa aggcaatccc attgaggaga 6061 cgggcgagat tggtgagatt gccgccaggc cggacaccga gggctacgag cccgtctcct 6121 ccaccctctg gcgacagcgg gaggagtact gtgcccgcct cattcaacat gcctggcgca 6181 agcataaaac gcgcgccgag ggcggtggtg caccgtccga cgcggaaggc gacggccccg 6241 aagatggtga tgcgggtggc ggtggcgggg cggcgctgat gctgggtgtt ctggatgttc 6301 cagatgctgc tggcgatgca gcaaccactg gctcccatga cggggcaacg gcactcgatc 6361 ccgagaccga tccatcggga gtaccggcgg cagcggcggt ggccccacag ccagccggtg 6421 acggcggcga gggaccggat ggaggagcaa cagccgatcc gcacgagagc aatgtaaata 6481 gtccgacgat ggacggcgcg acggcgggca gcccgggcgc agggagcgct ggcagcactg 6541 gccgacagac ggccgttctc gtggagagcg atgggtttgt gaccaagaac gggcacaagg 6601 ttgtaataca ctcgcgttcg ccgagcataa cgtcgcgcac ggcggatgtc tgagccaggc 6661 ctcgcccccc cctccaagat gcacgcgagt attaggtgca ggtgcagatg cagtgcagtg 6721 gtggtgccac aacaacaaca acaacaacag caggtgccac tggtagctgc aattgcaact 6781 gcaacagcag caacaggaag aa