PREDICTED: Drosophila obscura sodium channel protein para
LOCUS XM_041592002 6802 bp mRNA linear INV 14-MAY-2021
(LOC111070739), transcript variant X23, mRNA.
ACCESSION XM_041592002
VERSION XM_041592002.1
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..6802
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..6802
/gene="LOC111070739"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 52 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 6 samples with support for all annotated
introns"
/db_xref="GeneID:111070739"
CDS 237..6653
/gene="LOC111070739"
/codon_start=1
/product="sodium channel protein para isoform X23"
/protein_id="XP_041447936.1"
/db_xref="GeneID:111070739"
/translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK
RAEGEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLEDIDPFYSNILT
FVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIITTILVNCILMIM
PTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDFVVIALAYVTMG
IDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALM
GLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDGISFPLCGNISG
AGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDLYQLVLRAAGPW
HMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIREAEEAAAAKAA
KLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEKGNDDNNKEKMS
IRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTYTIRNGRGRFGIPGSDRKPLVLST
YQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLGSRHSSYTSHQSRISYTSHGDL
LGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTTCLDPNHKVEHRDFEIGLECTDE
AGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDRGVSVYYFPTEDD
DEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQEWISLIVFDPFVELFITLCIVVN
TMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATMKLCAMSPKYYFQEGWNIFDFII
VALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISIMGRTMGALGNLTFVL
CIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNFTDFMHSFMIVFRVLCGEWIESM
WDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGSSSLSAPTADNDTNKIAEA
FNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSGERTNQISWIWSEEHGDNELELG
HDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNNKPKKSKYLNNATMIGNSIN
HQDNRLEHELNHRGLSLQDDDTASINSYGSHKNRPFKDESHKGSAETMEGEEKRDASK
EDLGIDEELDEEGELEEGPLDGDIIIHANDEDILDEYPADCCPDSYYKKFPILAGDDD
SPFWQGWGNLRLKTFQLIENKYFETAVITMILMSSLALALEDVHLPQRPILQDILYYM
DRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGIQAFK
TMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAG
KYFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQVATFKGWI
QIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDNFNEQKKKA
GGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRPQAIVFEIVTDKKFDIVIMLF
IGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSSECLLKIFALRYHYFIEPWNLFD
VVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMS
LPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQMSTSA
GWDGVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLLSYLVISFLIVINMYIAVIL
ENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEFLDVLEPPLQIHKP
NKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGNPIEETGEIGEIAARPDTEGYE
PVSSTLWRQREEYCARLIQHAWRKHKTRAEGGGAPSDAEGDGPEDGDAGGGGGAALML
GVLDVPDAAGDAATTGSHDGATALDPETDPSGVPAAAAVAPQPAGDGGEGPDGGATAD
PHESNVNSPTMDGATAGSPGAGSAGSTGRQTAVLVESDGFVTKNGHKVVIHSRSPSIT
SRTADV"
misc_feature 654..1508
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 1857..2357
/gene="LOC111070739"
/note="Cytoplasmic domain of voltage-gated Na+ ion
channel; Region: Na_trans_cytopl; pfam11933"
/db_xref="CDD:463401"
misc_feature 2586..3221
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 3297..4070
/gene="LOC111070739"
/note="Sodium ion transport-associated; Region:
Na_trans_assoc; pfam06512"
/db_xref="CDD:461936"
misc_feature 4080..4895
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 4863..5021
/gene="LOC111070739"
/note="Inactivation gate of the voltage-gated sodium
channel alpha subunits; Region: Na_channel_gate; cd13433"
/db_xref="CDD:240441"
misc_feature 4908..4919
/gene="LOC111070739"
/note="putative hydrophobic latch; other site"
/db_xref="CDD:240441"
misc_feature 5043..5795
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 5826..5969
/gene="LOC111070739"
/note="Voltage-dependent L-type calcium channel,
IQ-associated; Region: GPHH; pfam16905"
/db_xref="CDD:465306"
ORIGIN
1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca
61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg
121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac
181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga
241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg
301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg
361 aaagaaagag agccgaggga gagatccgat atgatgacga ggacgaggat gaaggtccac
421 aaccggatcc tacacttgaa cagggtgtgc caatacctgt tcgactgcag ggcagcttcc
481 ctccggaatt ggcctccact cccctcgagg atatcgatcc cttctacagc aatatactga
541 cattcgtagt tgtaagcaaa ggaaaagata tttttcgctt ttctgcatca aaagcaatgt
601 ggctgctcga tccattcaat ccgatacgtc gtgtggccat ttacatttta gtgcatccac
661 tattttcgtt attcatcatt accacaattc tcgtcaactg catcctgatg ataatgccga
721 caacgcccac agttgagtcc actgaggtga tattcaccgg aatctacaca tttgaatcag
781 ctgttaaagt gatggcacga ggtttcattt tatgcccgtt tacgtatctt agagatgcat
841 ggaattggct ggacttcgta gtaatagctt tagcttatgt gaccatgggt atagatttag
901 gtaatcttgc agccttgcga acgtttaggg tgctgcgagc gcttaaaacc gtagccattg
961 tgccaggctt gaagaccatt gtcggtgcgg tcatcgaatc tgtaaagaat ctgcgcgatg
1021 tgataatttt gacaatgttc tccctgtcgg tgttcgcgct gatggggctg caaatctaca
1081 tgggcgtgct aacgcagaag tgcatcaaga agttcccgct ggacggctcc tggggcaacc
1141 tgaccgacga gaactgggcc tatcacaata gcaacaactc taattggtat tcggaagacg
1201 acggtatatc ctttccgttg tgcggtaata tctctggagc ggggcaatgt gaagacgatt
1261 acgtgtgtct gcaggggttc gggccgaacc cgaactatgg ctacaccagt ttcgattcgt
1321 tcggttgggc gtttctgtcc gccttccggc tgatgacgca ggacttctgg gaggatctgt
1381 atcagctggt gttgcgtgcc gcaggaccct ggcacatgct gttctttata gtcatcatct
1441 tcctaggttc attctatctt gtgaatttga ttttggccat tgttgccatg tcgtatgacg
1501 aattgcaaaa gaaggccgaa gaagaagagg ctgccgaaga ggaggcgata cgtgaagccg
1561 aggaagctgc cgccgccaaa gcagccaagc tggaggagcg cgccaatgcg caggcccagg
1621 ccgccgccga tgcagctgcc gccgaagagg cggctcttca tccggagatg gccaagagtc
1681 cgacgtattc gtgcatcagc tatgagctat ttgtgggcgg cgagaaaggc aacgatgaca
1741 acaacaagga gaagatgtcc atacgcagcg ttgaggtgga gtcggagtcg gtgagcgtta
1801 tacaaagaca accagcacct accacagcac accaagctac caaagttcgt aaagtgagca
1861 cgtacacgat ccggaatgga cgtggacgct ttggtatacc cggcagcgat cgcaagccgt
1921 tggtattgtc aacatatcag gatgctcagc agcacttgcc ctatgccgat gattcgaacg
1981 ctgttacgcc catgtccgag gagaacggtg ccattatagt gcccgtttat tatggaaatc
2041 taggctccag gcattcatcg tatacttcgc atcagtccag aatatcgtat acctcacatg
2101 gcgatctatt gggcggcatg gccgtcatgg gcgtcagcac aatgaccaag gagagcaaat
2161 tgcgaaatcg caactcacgc aatcaatcag tgggcgccac caatggcggc accacctgcc
2221 tggaccccaa tcacaaggtc gagcatcgcg acttcgaaat cggtctggag tgcacggacg
2281 aagctggcaa gattaaacat catgacaatc cttttatcga gcccgtccag acacaaacgg
2341 tagtcgacat gaaagatgtg atggtactga atgacattat cgaacaggcc gctggtcggc
2401 acagtcgggc tagtgatcgc ggtgtctccg tttactattt cccaacagag gacgatgatg
2461 aggatgggcc gacattaaaa gacaaggccc tcgaagcgct aatgaaaggc atcgaagtgt
2521 tttgtgtgtg ggactgttgc tgggtttggt tgaaattgca ggagtggata tcgctgatcg
2581 tcttcgatcc ctttgtcgag ctcttcatca cgctgtgcat tgtggtcaac acgatgttca
2641 tggccatgga ccatcacgac atgaacaagg agatggaacg catccttaag tgcggaaatt
2701 atttcttcac ggcaacattc gccattgagg caaccatgaa actgtgcgcc atgagcccca
2761 aatactattt ccaggagggc tggaacatct ttgacttcat cattgtggca ctctcattgc
2821 tggagctggg cctcgagggc gttcagggcc tctccgtctt gcgttcgttt cgtttgctgc
2881 gtgtattcaa attggccaag tcctggccaa cacttaattt actcatttcg attatgggac
2941 gcaccatggg cgctttgggt aatctgacat ttgtactttg cattatcatc ttcatctttg
3001 cggtgatggg aatgcaactg ttcggaaaga attatcatga taacaaggat cgcttcccgg
3061 acggtgacct gccccgctgg aacttcaccg acttcatgca cagcttcatg atcgtgtttc
3121 gggtgctatg cggcgagtgg atcgagtcca tgtgggactg tatgcacgtg ggcgatgtat
3181 cgtgcattcc attcttcttg gccaccgttg tcatcggcaa tttagtggtt cttaaccttt
3241 tcttagccct gcttttgtca aattttggtt catctagctt atcagcgccg acagccgata
3301 acgataccaa taaaatagcc gaggccttca atcgaattgg gcgatttaaa agttgggtta
3361 agcgtaatat tgctgattgt ttcaagttaa tacgtaacaa attgacaaat caaataagtg
3421 atcaaccatc aggtgagagg accaaccaga tcagttggat ttggagcgaa gagcacggcg
3481 acaacgagct ggagctgggc cacgacgaga tactcgccga cgggctcatc aagaagggca
3541 tcaaggaggc gacacagctg gaggtggcca tcggtgatgg catggagttc acgatacacg
3601 gcgacatgaa gaacaacaag ccgaagaaat ccaaatatct aaataacgca acgatgattg
3661 gcaactcaat taaccaccaa gacaatagac tggaacacga gctaaaccat agaggtttgt
3721 ccttacagga cgacgacact gccagcatta actcatatgg tagccataag aatcgaccat
3781 tcaaggatga gagccacaag ggcagcgccg agacgatgga gggcgaggag aagcgggacg
3841 ccagcaagga ggatttaggt atcgatgagg agctcgacga ggagggcgaa ttggaggagg
3901 gcccgctcga cggcgatatc atcatacatg ccaacgatga ggatatactc gatgaatatc
3961 cagctgattg ctgccccgat tcgtactata agaaatttcc gatcttagcc ggtgatgatg
4021 actcgccgtt ctggcaagga tggggcaatt tacgactgaa aacttttcaa ttaattgaaa
4081 ataaatattt tgaaacagct gttatcacta tgattttaat gagtagctta gctttggcat
4141 tagaagatgt acatctgcca caaagaccca tactgcagga tattttatac tatatggaca
4201 gaatatttac ggttatattc ttcttggaaa tgttaatcaa gtggctggcg ctcggcttca
4261 aagtgtactt cacgaacgcg tggtgctggc tcgatttcgt cattgtcatg gtatcgctta
4321 tcaacttcgt tgcttcactt gttggagctg gtggtattca agccttcaag actatgcgaa
4381 cgttaagagc actgagacca ctacgtgcca tgtcccgtat gcagggcatg agggtcgtcg
4441 ttaatgcgct ggtacaagct ataccgtcca tcttcaatgt gctattggtg tgtctaatat
4501 tttggctaat ttttgccata atgggtgtac agctttttgc tggaaaatat tttaagtgcg
4561 aggacatgaa tggcacgaag ctcagccacg agatcatacc aaatcgcaat gcctgcgaaa
4621 gcgagaacta cacgtgggtg aattcagcaa tgaatttcga tcatgtaggt aacgcgtatc
4681 tgtgcctttt ccaagtggcc accttcaaag gctggataca aatcatgaac gatgctatcg
4741 attcacgaga ggtggacaag cagccaattc gtgaaacgaa catctacatg tatttatatt
4801 tcgtattctt catcatattt ggatcatttt tcacactcaa tctgttcatt ggtgttatca
4861 ttgataattt taatgagcaa aagaaaaaag caggtggatc attagaaatg ttcatgacag
4921 aagatcagaa aaagtactat aatgctatga aaaagatggg ctctaaaaaa ccattaaaag
4981 ccattccaag accaaggtgg cgtccacaag caatagtctt tgaaatagta accgataaga
5041 aattcgatat agtcataatg ttattcattg gtctgaacat gttcaccatg acactcgatc
5101 gttacgatgc gtcggacacg tacaacgcgg tccttgacta tctcaatgcg atattcgtag
5161 ttattttcag ttccgaatgt ctattaaaaa tattcgcttt acgatatcac tattttattg
5221 agccatggaa tttatttgat gtagtagttg tcattttatc catcttaggt ctcgtactta
5281 gcgatattat cgagaaatac ttcgtatcgc cgacactgct ccgagtggtg cgcgtggcca
5341 aagtgggtcg cgtactgcgt ctggtgaagg gcgccaaggg tatacgaacg ctgctgttcg
5401 ccctggccat gtcgctgccg gcgctgttca acatctgcct gctgctgttc ctggtcatgt
5461 tcatcttcgc gatattcggc atgtcgttct tcatgcatgt gaaggagaag agcggcatca
5521 acgacgtcta caacttcaag acgttcggac agagcatgat cctgctcttt cagatgtcta
5581 cctcagccgg ttgggatggt gtactcgacg ccattatcaa tgaggaagca tgcgatccac
5641 ccgacaacga caaaggctat ccgggcaatt gtggttcagc gaccgttgga ataacgtttc
5701 tcctctcata cctagttata agctttttga tagttattaa tatgtacatt gctgtcattc
5761 tcgagaacta tagtcaggcc accgaggatg tgcaggaggg tctcaccgac gacgattacg
5821 atatgtacta tgagatctgg caacagttcg atccggaggg cacccagtac atacgatacg
5881 accagctgtc cgagttcctc gacgtgctgg agcccccgct ccagattcac aagcccaaca
5941 agtacaaaat catatcgatg gacataccca tctgtcgcgg tgacctcatg tactgtgtgg
6001 acatactgga cgcactgacc aaagactttt tcgcgcgcaa aggcaatccc attgaggaga
6061 cgggcgagat tggtgagatt gccgccaggc cggacaccga gggctacgag cccgtctcct
6121 ccaccctctg gcgacagcgg gaggagtact gtgcccgcct cattcaacat gcctggcgca
6181 agcataaaac gcgcgccgag ggcggtggtg caccgtccga cgcggaaggc gacggccccg
6241 aagatggtga tgcgggtggc ggtggcgggg cggcgctgat gctgggtgtt ctggatgttc
6301 cagatgctgc tggcgatgca gcaaccactg gctcccatga cggggcaacg gcactcgatc
6361 ccgagaccga tccatcggga gtaccggcgg cagcggcggt ggccccacag ccagccggtg
6421 acggcggcga gggaccggat ggaggagcaa cagccgatcc gcacgagagc aatgtaaata
6481 gtccgacgat ggacggcgcg acggcgggca gcccgggcgc agggagcgct ggcagcactg
6541 gccgacagac ggccgttctc gtggagagcg atgggtttgt gaccaagaac gggcacaagg
6601 ttgtaataca ctcgcgttcg ccgagcataa cgtcgcgcac ggcggatgtc tgagccaggc
6661 ctcgcccccc cctccaagat gcacgcgagt attaggtgca ggtgcagatg cagtgcagtg
6721 gtggtgccac aacaacaaca acaacaacag caggtgccac tggtagctgc aattgcaact
6781 gcaacagcag caacaggaag aa