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LOCUS XM_041592001 6811 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X21, mRNA. ACCESSION XM_041592001 VERSION XM_041592001.1 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6811 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6811 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 46 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6662 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X21" /protein_id="XP_041447935.1" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLE DIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIIT TILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDF VVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIIL TMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDG ISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDL YQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIR EAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEK GNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTYTIRNGRGRFGIP GSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLGSRHSSYTSHQ SRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTTCLDPNHKVEHR DFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDRG EDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQEWISLIVFDPFVELFITLCI VVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATMKLCAMSPKYYFQEGWNIFD FIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISIMGRTMGALGNLT FVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNFTDFMHSFMIVFRVLCGEWI ESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGSSSLSAPTADNDTNKI AEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSGERTNQISWIWSEEHGDNEL ELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNNKPKKSKYLNNATMIGN SINHQDNRLEHELNHRGLSLQDDDTASINSYGSHKNRPFKDESHKGSAETMEGEEKRD ASKEDLGIDEELDEEGELEEGPLDGDIIIHANDEDILDEYPADCCPDSYYKKFPILAG DDDSPFWQGWGNLRLKTFQLIENKYFETAVITMILMSSLALALEDVHLPQRPILQDIL YYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGIQ AFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQL FAGKYFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQVATFK GWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDNFNEQK KKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRPQAIVFEIVTDKKFDIVI MLFIGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSSECLLKIFALRYHYFIEPWN LFDVVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFAL AMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQMS TSAGWDGVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLLSYLVISFLIVINMYIA VILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEFLDVLEPPLQI HKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGNPIEETGEIGEIAARPDTE GYEPVSSTLWRQREEYCARLIQHAWRKHKTRAEGGGAPSDAEGDGPEDGDAGGGGGAA LMLGVLDVPDAAGDAATTGSHDGATALDPETDPSGVPAAAAVAPQPAGDGGEGPDGGA TADPHESNVNSPTMDGATAGSPGAGSAGSTGRQTAVLVESDGFVTKNGHKVVIHSRSP SITSRTADV" misc_feature 687..1541 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1890..2390 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2595..3230 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3306..4079 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4089..4904 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4872..5030 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 4917..4928 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 5052..5804 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5835..5978 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gagccgcaat atggtcgcaa gaaaaaacaa aaagaaatcc 421 gatatgatga cgaggacgag gatgaaggtc cacaaccgga tcctacactt gaacagggtg 481 tgccaatacc tgttcgactg cagggcagct tccctccgga attggcctcc actcccctcg 541 aggatatcga tcccttctac agcaatatac tgacattcgt agttgtaagc aaaggaaaag 601 atatttttcg cttttctgca tcaaaagcaa tgtggctgct cgatccattc aatccgatac 661 gtcgtgtggc catttacatt ttagtgcatc cactattttc gttattcatc attaccacaa 721 ttctcgtcaa ctgcatcctg atgataatgc cgacaacgcc cacagttgag tccactgagg 781 tgatattcac cggaatctac acatttgaat cagctgttaa agtgatggca cgaggtttca 841 ttttatgccc gtttacgtat cttagagatg catggaattg gctggacttc gtagtaatag 901 ctttagctta tgtgaccatg ggtatagatt taggtaatct tgcagccttg cgaacgttta 961 gggtgctgcg agcgcttaaa accgtagcca ttgtgccagg cttgaagacc attgtcggtg 1021 cggtcatcga atctgtaaag aatctgcgcg atgtgataat tttgacaatg ttctccctgt 1081 cggtgttcgc gctgatgggg ctgcaaatct acatgggcgt gctaacgcag aagtgcatca 1141 agaagttccc gctggacggc tcctggggca acctgaccga cgagaactgg gcctatcaca 1201 atagcaacaa ctctaattgg tattcggaag acgacggtat atcctttccg ttgtgcggta 1261 atatctctgg agcggggcaa tgtgaagacg attacgtgtg tctgcagggg ttcgggccga 1321 acccgaacta tggctacacc agtttcgatt cgttcggttg ggcgtttctg tccgccttcc 1381 ggctgatgac gcaggacttc tgggaggatc tgtatcagct ggtgttgcgt gccgcaggac 1441 cctggcacat gctgttcttt atagtcatca tcttcctagg ttcattctat cttgtgaatt 1501 tgattttggc cattgttgcc atgtcgtatg acgaattgca aaagaaggcc gaagaagaag 1561 aggctgccga agaggaggcg atacgtgaag ccgaggaagc tgccgccgcc aaagcagcca 1621 agctggagga gcgcgccaat gcgcaggccc aggccgccgc cgatgcagct gccgccgaag 1681 aggcggctct tcatccggag atggccaaga gtccgacgta ttcgtgcatc agctatgagc 1741 tatttgtggg cggcgagaaa ggcaacgatg acaacaacaa ggagaagatg tccatacgca 1801 gcgttgaggt ggagtcggag tcggtgagcg ttatacaaag acaaccagca cctaccacag 1861 cacaccaagc taccaaagtt cgtaaagtga gcacgtacac gatccggaat ggacgtggac 1921 gctttggtat acccggcagc gatcgcaagc cgttggtatt gtcaacatat caggatgctc 1981 agcagcactt gccctatgcc gatgattcga acgctgttac gcccatgtcc gaggagaacg 2041 gtgccattat agtgcccgtt tattatggaa atctaggctc caggcattca tcgtatactt 2101 cgcatcagtc cagaatatcg tatacctcac atggcgatct attgggcggc atggccgtca 2161 tgggcgtcag cacaatgacc aaggagagca aattgcgaaa tcgcaactca cgcaatcaat 2221 cagtgggcgc caccaatggc ggcaccacct gcctggaccc caatcacaag gtcgagcatc 2281 gcgacttcga aatcggtctg gagtgcacgg acgaagctgg caagattaaa catcatgaca 2341 atccttttat cgagcccgtc cagacacaaa cggtagtcga catgaaagat gtgatggtac 2401 tgaatgacat tatcgaacag gccgctggtc ggcacagtcg ggctagtgat cgcggtgagg 2461 acgatgatga ggatgggccg acattaaaag acaaggccct cgaagcgcta atgaaaggca 2521 tcgaagtgtt ttgtgtgtgg gactgttgct gggtttggtt gaaattgcag gagtggatat 2581 cgctgatcgt cttcgatccc tttgtcgagc tcttcatcac gctgtgcatt gtggtcaaca 2641 cgatgttcat ggccatggac catcacgaca tgaacaagga gatggaacgc atccttaagt 2701 gcggaaatta tttcttcacg gcaacattcg ccattgaggc aaccatgaaa ctgtgcgcca 2761 tgagccccaa atactatttc caggagggct ggaacatctt tgacttcatc attgtggcac 2821 tctcattgct ggagctgggc ctcgagggcg ttcagggcct ctccgtcttg cgttcgtttc 2881 gtttgctgcg tgtattcaaa ttggccaagt cctggccaac acttaattta ctcatttcga 2941 ttatgggacg caccatgggc gctttgggta atctgacatt tgtactttgc attatcatct 3001 tcatctttgc ggtgatggga atgcaactgt tcggaaagaa ttatcatgat aacaaggatc 3061 gcttcccgga cggtgacctg ccccgctgga acttcaccga cttcatgcac agcttcatga 3121 tcgtgtttcg ggtgctatgc ggcgagtgga tcgagtccat gtgggactgt atgcacgtgg 3181 gcgatgtatc gtgcattcca ttcttcttgg ccaccgttgt catcggcaat ttagtggttc 3241 ttaacctttt cttagccctg cttttgtcaa attttggttc atctagctta tcagcgccga 3301 cagccgataa cgataccaat aaaatagccg aggccttcaa tcgaattggg cgatttaaaa 3361 gttgggttaa gcgtaatatt gctgattgtt tcaagttaat acgtaacaaa ttgacaaatc 3421 aaataagtga tcaaccatca ggtgagagga ccaaccagat cagttggatt tggagcgaag 3481 agcacggcga caacgagctg gagctgggcc acgacgagat actcgccgac gggctcatca 3541 agaagggcat caaggaggcg acacagctgg aggtggccat cggtgatggc atggagttca 3601 cgatacacgg cgacatgaag aacaacaagc cgaagaaatc caaatatcta aataacgcaa 3661 cgatgattgg caactcaatt aaccaccaag acaatagact ggaacacgag ctaaaccata 3721 gaggtttgtc cttacaggac gacgacactg ccagcattaa ctcatatggt agccataaga 3781 atcgaccatt caaggatgag agccacaagg gcagcgccga gacgatggag ggcgaggaga 3841 agcgggacgc cagcaaggag gatttaggta tcgatgagga gctcgacgag gagggcgaat 3901 tggaggaggg cccgctcgac ggcgatatca tcatacatgc caacgatgag gatatactcg 3961 atgaatatcc agctgattgc tgccccgatt cgtactataa gaaatttccg atcttagccg 4021 gtgatgatga ctcgccgttc tggcaaggat ggggcaattt acgactgaaa acttttcaat 4081 taattgaaaa taaatatttt gaaacagctg ttatcactat gattttaatg agtagcttag 4141 ctttggcatt agaagatgta catctgccac aaagacccat actgcaggat attttatact 4201 atatggacag aatatttacg gttatattct tcttggaaat gttaatcaag tggctggcgc 4261 tcggcttcaa agtgtacttc acgaacgcgt ggtgctggct cgatttcgtc attgtcatgg 4321 tatcgcttat caacttcgtt gcttcacttg ttggagctgg tggtattcaa gccttcaaga 4381 ctatgcgaac gttaagagca ctgagaccac tacgtgccat gtcccgtatg cagggcatga 4441 gggtcgtcgt taatgcgctg gtacaagcta taccgtccat cttcaatgtg ctattggtgt 4501 gtctaatatt ttggctaatt tttgccataa tgggtgtaca gctttttgct ggaaaatatt 4561 ttaagtgcga ggacatgaat ggcacgaagc tcagccacga gatcatacca aatcgcaatg 4621 cctgcgaaag cgagaactac acgtgggtga attcagcaat gaatttcgat catgtaggta 4681 acgcgtatct gtgccttttc caagtggcca ccttcaaagg ctggatacaa atcatgaacg 4741 atgctatcga ttcacgagag gtggacaagc agccaattcg tgaaacgaac atctacatgt 4801 atttatattt cgtattcttc atcatatttg gatcattttt cacactcaat ctgttcattg 4861 gtgttatcat tgataatttt aatgagcaaa agaaaaaagc aggtggatca ttagaaatgt 4921 tcatgacaga agatcagaaa aagtactata atgctatgaa aaagatgggc tctaaaaaac 4981 cattaaaagc cattccaaga ccaaggtggc gtccacaagc aatagtcttt gaaatagtaa 5041 ccgataagaa attcgatata gtcataatgt tattcattgg tctgaacatg ttcaccatga 5101 cactcgatcg ttacgatgcg tcggacacgt acaacgcggt ccttgactat ctcaatgcga 5161 tattcgtagt tattttcagt tccgaatgtc tattaaaaat attcgcttta cgatatcact 5221 attttattga gccatggaat ttatttgatg tagtagttgt cattttatcc atcttaggtc 5281 tcgtacttag cgatattatc gagaaatact tcgtatcgcc gacactgctc cgagtggtgc 5341 gcgtggccaa agtgggtcgc gtactgcgtc tggtgaaggg cgccaagggt atacgaacgc 5401 tgctgttcgc cctggccatg tcgctgccgg cgctgttcaa catctgcctg ctgctgttcc 5461 tggtcatgtt catcttcgcg atattcggca tgtcgttctt catgcatgtg aaggagaaga 5521 gcggcatcaa cgacgtctac aacttcaaga cgttcggaca gagcatgatc ctgctctttc 5581 agatgtctac ctcagccggt tgggatggtg tactcgacgc cattatcaat gaggaagcat 5641 gcgatccacc cgacaacgac aaaggctatc cgggcaattg tggttcagcg accgttggaa 5701 taacgtttct cctctcatac ctagttataa gctttttgat agttattaat atgtacattg 5761 ctgtcattct cgagaactat agtcaggcca ccgaggatgt gcaggagggt ctcaccgacg 5821 acgattacga tatgtactat gagatctggc aacagttcga tccggagggc acccagtaca 5881 tacgatacga ccagctgtcc gagttcctcg acgtgctgga gcccccgctc cagattcaca 5941 agcccaacaa gtacaaaatc atatcgatgg acatacccat ctgtcgcggt gacctcatgt 6001 actgtgtgga catactggac gcactgacca aagacttttt cgcgcgcaaa ggcaatccca 6061 ttgaggagac gggcgagatt ggtgagattg ccgccaggcc ggacaccgag ggctacgagc 6121 ccgtctcctc caccctctgg cgacagcggg aggagtactg tgcccgcctc attcaacatg 6181 cctggcgcaa gcataaaacg cgcgccgagg gcggtggtgc accgtccgac gcggaaggcg 6241 acggccccga agatggtgat gcgggtggcg gtggcggggc ggcgctgatg ctgggtgttc 6301 tggatgttcc agatgctgct ggcgatgcag caaccactgg ctcccatgac ggggcaacgg 6361 cactcgatcc cgagaccgat ccatcgggag taccggcggc agcggcggtg gccccacagc 6421 cagccggtga cggcggcgag ggaccggatg gaggagcaac agccgatccg cacgagagca 6481 atgtaaatag tccgacgatg gacggcgcga cggcgggcag cccgggcgca gggagcgctg 6541 gcagcactgg ccgacagacg gccgttctcg tggagagcga tgggtttgtg accaagaacg 6601 ggcacaaggt tgtaatacac tcgcgttcgc cgagcataac gtcgcgcacg gcggatgtct 6661 gagccaggcc tcgccccccc ctccaagatg cacgcgagta ttaggtgcag gtgcagatgc 6721 agtgcagtgg tggtgccaca acaacaacaa caacaacagc aggtgccact ggtagctgca 6781 attgcaactg caacagcagc aacaggaaga a