PREDICTED: Drosophila obscura sodium channel protein para
LOCUS XM_041592001 6811 bp mRNA linear INV 14-MAY-2021
(LOC111070739), transcript variant X21, mRNA.
ACCESSION XM_041592001
VERSION XM_041592001.1
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..6811
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..6811
/gene="LOC111070739"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 46 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 7 samples with support for all annotated
introns"
/db_xref="GeneID:111070739"
CDS 237..6662
/gene="LOC111070739"
/codon_start=1
/product="sodium channel protein para isoform X21"
/protein_id="XP_041447935.1"
/db_xref="GeneID:111070739"
/translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK
RAEGEPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLE
DIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIIT
TILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDF
VVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIIL
TMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDG
ISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDL
YQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIR
EAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEK
GNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTYTIRNGRGRFGIP
GSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLGSRHSSYTSHQ
SRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTTCLDPNHKVEHR
DFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDRG
EDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQEWISLIVFDPFVELFITLCI
VVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATMKLCAMSPKYYFQEGWNIFD
FIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISIMGRTMGALGNLT
FVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNFTDFMHSFMIVFRVLCGEWI
ESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGSSSLSAPTADNDTNKI
AEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSGERTNQISWIWSEEHGDNEL
ELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNNKPKKSKYLNNATMIGN
SINHQDNRLEHELNHRGLSLQDDDTASINSYGSHKNRPFKDESHKGSAETMEGEEKRD
ASKEDLGIDEELDEEGELEEGPLDGDIIIHANDEDILDEYPADCCPDSYYKKFPILAG
DDDSPFWQGWGNLRLKTFQLIENKYFETAVITMILMSSLALALEDVHLPQRPILQDIL
YYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGIQ
AFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQL
FAGKYFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQVATFK
GWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDNFNEQK
KKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRPQAIVFEIVTDKKFDIVI
MLFIGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSSECLLKIFALRYHYFIEPWN
LFDVVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFAL
AMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQMS
TSAGWDGVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLLSYLVISFLIVINMYIA
VILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEFLDVLEPPLQI
HKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGNPIEETGEIGEIAARPDTE
GYEPVSSTLWRQREEYCARLIQHAWRKHKTRAEGGGAPSDAEGDGPEDGDAGGGGGAA
LMLGVLDVPDAAGDAATTGSHDGATALDPETDPSGVPAAAAVAPQPAGDGGEGPDGGA
TADPHESNVNSPTMDGATAGSPGAGSAGSTGRQTAVLVESDGFVTKNGHKVVIHSRSP
SITSRTADV"
misc_feature 687..1541
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 1890..2390
/gene="LOC111070739"
/note="Cytoplasmic domain of voltage-gated Na+ ion
channel; Region: Na_trans_cytopl; pfam11933"
/db_xref="CDD:463401"
misc_feature 2595..3230
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 3306..4079
/gene="LOC111070739"
/note="Sodium ion transport-associated; Region:
Na_trans_assoc; pfam06512"
/db_xref="CDD:461936"
misc_feature 4089..4904
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 4872..5030
/gene="LOC111070739"
/note="Inactivation gate of the voltage-gated sodium
channel alpha subunits; Region: Na_channel_gate; cd13433"
/db_xref="CDD:240441"
misc_feature 4917..4928
/gene="LOC111070739"
/note="putative hydrophobic latch; other site"
/db_xref="CDD:240441"
misc_feature 5052..5804
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 5835..5978
/gene="LOC111070739"
/note="Voltage-dependent L-type calcium channel,
IQ-associated; Region: GPHH; pfam16905"
/db_xref="CDD:465306"
ORIGIN
1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca
61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg
121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac
181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga
241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg
301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg
361 aaagaaagag agccgaggga gagccgcaat atggtcgcaa gaaaaaacaa aaagaaatcc
421 gatatgatga cgaggacgag gatgaaggtc cacaaccgga tcctacactt gaacagggtg
481 tgccaatacc tgttcgactg cagggcagct tccctccgga attggcctcc actcccctcg
541 aggatatcga tcccttctac agcaatatac tgacattcgt agttgtaagc aaaggaaaag
601 atatttttcg cttttctgca tcaaaagcaa tgtggctgct cgatccattc aatccgatac
661 gtcgtgtggc catttacatt ttagtgcatc cactattttc gttattcatc attaccacaa
721 ttctcgtcaa ctgcatcctg atgataatgc cgacaacgcc cacagttgag tccactgagg
781 tgatattcac cggaatctac acatttgaat cagctgttaa agtgatggca cgaggtttca
841 ttttatgccc gtttacgtat cttagagatg catggaattg gctggacttc gtagtaatag
901 ctttagctta tgtgaccatg ggtatagatt taggtaatct tgcagccttg cgaacgttta
961 gggtgctgcg agcgcttaaa accgtagcca ttgtgccagg cttgaagacc attgtcggtg
1021 cggtcatcga atctgtaaag aatctgcgcg atgtgataat tttgacaatg ttctccctgt
1081 cggtgttcgc gctgatgggg ctgcaaatct acatgggcgt gctaacgcag aagtgcatca
1141 agaagttccc gctggacggc tcctggggca acctgaccga cgagaactgg gcctatcaca
1201 atagcaacaa ctctaattgg tattcggaag acgacggtat atcctttccg ttgtgcggta
1261 atatctctgg agcggggcaa tgtgaagacg attacgtgtg tctgcagggg ttcgggccga
1321 acccgaacta tggctacacc agtttcgatt cgttcggttg ggcgtttctg tccgccttcc
1381 ggctgatgac gcaggacttc tgggaggatc tgtatcagct ggtgttgcgt gccgcaggac
1441 cctggcacat gctgttcttt atagtcatca tcttcctagg ttcattctat cttgtgaatt
1501 tgattttggc cattgttgcc atgtcgtatg acgaattgca aaagaaggcc gaagaagaag
1561 aggctgccga agaggaggcg atacgtgaag ccgaggaagc tgccgccgcc aaagcagcca
1621 agctggagga gcgcgccaat gcgcaggccc aggccgccgc cgatgcagct gccgccgaag
1681 aggcggctct tcatccggag atggccaaga gtccgacgta ttcgtgcatc agctatgagc
1741 tatttgtggg cggcgagaaa ggcaacgatg acaacaacaa ggagaagatg tccatacgca
1801 gcgttgaggt ggagtcggag tcggtgagcg ttatacaaag acaaccagca cctaccacag
1861 cacaccaagc taccaaagtt cgtaaagtga gcacgtacac gatccggaat ggacgtggac
1921 gctttggtat acccggcagc gatcgcaagc cgttggtatt gtcaacatat caggatgctc
1981 agcagcactt gccctatgcc gatgattcga acgctgttac gcccatgtcc gaggagaacg
2041 gtgccattat agtgcccgtt tattatggaa atctaggctc caggcattca tcgtatactt
2101 cgcatcagtc cagaatatcg tatacctcac atggcgatct attgggcggc atggccgtca
2161 tgggcgtcag cacaatgacc aaggagagca aattgcgaaa tcgcaactca cgcaatcaat
2221 cagtgggcgc caccaatggc ggcaccacct gcctggaccc caatcacaag gtcgagcatc
2281 gcgacttcga aatcggtctg gagtgcacgg acgaagctgg caagattaaa catcatgaca
2341 atccttttat cgagcccgtc cagacacaaa cggtagtcga catgaaagat gtgatggtac
2401 tgaatgacat tatcgaacag gccgctggtc ggcacagtcg ggctagtgat cgcggtgagg
2461 acgatgatga ggatgggccg acattaaaag acaaggccct cgaagcgcta atgaaaggca
2521 tcgaagtgtt ttgtgtgtgg gactgttgct gggtttggtt gaaattgcag gagtggatat
2581 cgctgatcgt cttcgatccc tttgtcgagc tcttcatcac gctgtgcatt gtggtcaaca
2641 cgatgttcat ggccatggac catcacgaca tgaacaagga gatggaacgc atccttaagt
2701 gcggaaatta tttcttcacg gcaacattcg ccattgaggc aaccatgaaa ctgtgcgcca
2761 tgagccccaa atactatttc caggagggct ggaacatctt tgacttcatc attgtggcac
2821 tctcattgct ggagctgggc ctcgagggcg ttcagggcct ctccgtcttg cgttcgtttc
2881 gtttgctgcg tgtattcaaa ttggccaagt cctggccaac acttaattta ctcatttcga
2941 ttatgggacg caccatgggc gctttgggta atctgacatt tgtactttgc attatcatct
3001 tcatctttgc ggtgatggga atgcaactgt tcggaaagaa ttatcatgat aacaaggatc
3061 gcttcccgga cggtgacctg ccccgctgga acttcaccga cttcatgcac agcttcatga
3121 tcgtgtttcg ggtgctatgc ggcgagtgga tcgagtccat gtgggactgt atgcacgtgg
3181 gcgatgtatc gtgcattcca ttcttcttgg ccaccgttgt catcggcaat ttagtggttc
3241 ttaacctttt cttagccctg cttttgtcaa attttggttc atctagctta tcagcgccga
3301 cagccgataa cgataccaat aaaatagccg aggccttcaa tcgaattggg cgatttaaaa
3361 gttgggttaa gcgtaatatt gctgattgtt tcaagttaat acgtaacaaa ttgacaaatc
3421 aaataagtga tcaaccatca ggtgagagga ccaaccagat cagttggatt tggagcgaag
3481 agcacggcga caacgagctg gagctgggcc acgacgagat actcgccgac gggctcatca
3541 agaagggcat caaggaggcg acacagctgg aggtggccat cggtgatggc atggagttca
3601 cgatacacgg cgacatgaag aacaacaagc cgaagaaatc caaatatcta aataacgcaa
3661 cgatgattgg caactcaatt aaccaccaag acaatagact ggaacacgag ctaaaccata
3721 gaggtttgtc cttacaggac gacgacactg ccagcattaa ctcatatggt agccataaga
3781 atcgaccatt caaggatgag agccacaagg gcagcgccga gacgatggag ggcgaggaga
3841 agcgggacgc cagcaaggag gatttaggta tcgatgagga gctcgacgag gagggcgaat
3901 tggaggaggg cccgctcgac ggcgatatca tcatacatgc caacgatgag gatatactcg
3961 atgaatatcc agctgattgc tgccccgatt cgtactataa gaaatttccg atcttagccg
4021 gtgatgatga ctcgccgttc tggcaaggat ggggcaattt acgactgaaa acttttcaat
4081 taattgaaaa taaatatttt gaaacagctg ttatcactat gattttaatg agtagcttag
4141 ctttggcatt agaagatgta catctgccac aaagacccat actgcaggat attttatact
4201 atatggacag aatatttacg gttatattct tcttggaaat gttaatcaag tggctggcgc
4261 tcggcttcaa agtgtacttc acgaacgcgt ggtgctggct cgatttcgtc attgtcatgg
4321 tatcgcttat caacttcgtt gcttcacttg ttggagctgg tggtattcaa gccttcaaga
4381 ctatgcgaac gttaagagca ctgagaccac tacgtgccat gtcccgtatg cagggcatga
4441 gggtcgtcgt taatgcgctg gtacaagcta taccgtccat cttcaatgtg ctattggtgt
4501 gtctaatatt ttggctaatt tttgccataa tgggtgtaca gctttttgct ggaaaatatt
4561 ttaagtgcga ggacatgaat ggcacgaagc tcagccacga gatcatacca aatcgcaatg
4621 cctgcgaaag cgagaactac acgtgggtga attcagcaat gaatttcgat catgtaggta
4681 acgcgtatct gtgccttttc caagtggcca ccttcaaagg ctggatacaa atcatgaacg
4741 atgctatcga ttcacgagag gtggacaagc agccaattcg tgaaacgaac atctacatgt
4801 atttatattt cgtattcttc atcatatttg gatcattttt cacactcaat ctgttcattg
4861 gtgttatcat tgataatttt aatgagcaaa agaaaaaagc aggtggatca ttagaaatgt
4921 tcatgacaga agatcagaaa aagtactata atgctatgaa aaagatgggc tctaaaaaac
4981 cattaaaagc cattccaaga ccaaggtggc gtccacaagc aatagtcttt gaaatagtaa
5041 ccgataagaa attcgatata gtcataatgt tattcattgg tctgaacatg ttcaccatga
5101 cactcgatcg ttacgatgcg tcggacacgt acaacgcggt ccttgactat ctcaatgcga
5161 tattcgtagt tattttcagt tccgaatgtc tattaaaaat attcgcttta cgatatcact
5221 attttattga gccatggaat ttatttgatg tagtagttgt cattttatcc atcttaggtc
5281 tcgtacttag cgatattatc gagaaatact tcgtatcgcc gacactgctc cgagtggtgc
5341 gcgtggccaa agtgggtcgc gtactgcgtc tggtgaaggg cgccaagggt atacgaacgc
5401 tgctgttcgc cctggccatg tcgctgccgg cgctgttcaa catctgcctg ctgctgttcc
5461 tggtcatgtt catcttcgcg atattcggca tgtcgttctt catgcatgtg aaggagaaga
5521 gcggcatcaa cgacgtctac aacttcaaga cgttcggaca gagcatgatc ctgctctttc
5581 agatgtctac ctcagccggt tgggatggtg tactcgacgc cattatcaat gaggaagcat
5641 gcgatccacc cgacaacgac aaaggctatc cgggcaattg tggttcagcg accgttggaa
5701 taacgtttct cctctcatac ctagttataa gctttttgat agttattaat atgtacattg
5761 ctgtcattct cgagaactat agtcaggcca ccgaggatgt gcaggagggt ctcaccgacg
5821 acgattacga tatgtactat gagatctggc aacagttcga tccggagggc acccagtaca
5881 tacgatacga ccagctgtcc gagttcctcg acgtgctgga gcccccgctc cagattcaca
5941 agcccaacaa gtacaaaatc atatcgatgg acatacccat ctgtcgcggt gacctcatgt
6001 actgtgtgga catactggac gcactgacca aagacttttt cgcgcgcaaa ggcaatccca
6061 ttgaggagac gggcgagatt ggtgagattg ccgccaggcc ggacaccgag ggctacgagc
6121 ccgtctcctc caccctctgg cgacagcggg aggagtactg tgcccgcctc attcaacatg
6181 cctggcgcaa gcataaaacg cgcgccgagg gcggtggtgc accgtccgac gcggaaggcg
6241 acggccccga agatggtgat gcgggtggcg gtggcggggc ggcgctgatg ctgggtgttc
6301 tggatgttcc agatgctgct ggcgatgcag caaccactgg ctcccatgac ggggcaacgg
6361 cactcgatcc cgagaccgat ccatcgggag taccggcggc agcggcggtg gccccacagc
6421 cagccggtga cggcggcgag ggaccggatg gaggagcaac agccgatccg cacgagagca
6481 atgtaaatag tccgacgatg gacggcgcga cggcgggcag cccgggcgca gggagcgctg
6541 gcagcactgg ccgacagacg gccgttctcg tggagagcga tgggtttgtg accaagaacg
6601 ggcacaaggt tgtaatacac tcgcgttcgc cgagcataac gtcgcgcacg gcggatgtct
6661 gagccaggcc tcgccccccc ctccaagatg cacgcgagta ttaggtgcag gtgcagatgc
6721 agtgcagtgg tggtgccaca acaacaacaa caacaacagc aggtgccact ggtagctgca
6781 attgcaactg caacagcagc aacaggaaga a