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LOCUS XM_041592000 6826 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X17, mRNA. ACCESSION XM_041592000 VERSION XM_041592000.1 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6826 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6826 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 45 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6677 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X17" /protein_id="XP_041447934.1" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLE DIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIIT TILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDF VVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIIL TMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDG ISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDL YQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIR EAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEK GNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTYTIRNGRGRFGIP GSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLGSRHSSYTSHQ SRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTTCLDPNHKVEHR DFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDRG VSVYYFPTEDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQEWISLIVFDPFV ELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATMKLCAMSPKYYF QEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISIMGRT MGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNFTDFMHSFMIVF RVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGSSSLSAPT ADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSGKGVCRCISAEH GDNELELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNNKPKKSKYLNNA TMIGNSINHQDNRLEHELNHRGLSLQDDDTASINSYGSHKNRPFKDESHKGSAETMEG EEKRDASKEDLGIDEELDEEGELEEGPLDGDIIIHANDEDILDEYPADCCPDSYYKKF PILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAVITMILMSSLALALEDVHLPQRPI LQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVIVMVSLINFVASLVG AGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAI MGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQ VATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDN FNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRPQAIVFEIVTDKK FDIVIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSSECLLKIFALRYHYF IEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIRT LLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMIL LFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLLSYLVISFLIVI NMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEFLDVLE PPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGNPIEETGEIGEIAA RPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKTRAEGGGAPSDAEGDGPEDGDAGG GGGAALMLGVLDVPDAAGDAATTGSHDGATALDPETDPSGVPAAAAVAPQPAGDGGEG PDGGATADPHESNVNSPTMDGATAGSPGAGSAGSTGRQTAVLVESDGFVTKNGHKVVI HSRSPSITSRTADV" misc_feature 687..1541 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1890..2390 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2619..3254 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3330..4094 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4104..4919 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4887..5045 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 4932..4943 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 5067..5819 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5850..5993 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gagccgcaat atggtcgcaa gaaaaaacaa aaagaaatcc 421 gatatgatga cgaggacgag gatgaaggtc cacaaccgga tcctacactt gaacagggtg 481 tgccaatacc tgttcgactg cagggcagct tccctccgga attggcctcc actcccctcg 541 aggatatcga tcccttctac agcaatatac tgacattcgt agttgtaagc aaaggaaaag 601 atatttttcg cttttctgca tcaaaagcaa tgtggctgct cgatccattc aatccgatac 661 gtcgtgtggc catttacatt ttagtgcatc cactattttc gttattcatc attaccacaa 721 ttctcgtcaa ctgcatcctg atgataatgc cgacaacgcc cacagttgag tccactgagg 781 tgatattcac cggaatctac acatttgaat cagctgttaa agtgatggca cgaggtttca 841 ttttatgccc gtttacgtat cttagagatg catggaattg gctggacttc gtagtaatag 901 ctttagctta tgtgaccatg ggtatagatt taggtaatct tgcagccttg cgaacgttta 961 gggtgctgcg agcgcttaaa accgtagcca ttgtgccagg cttgaagacc attgtcggtg 1021 cggtcatcga atctgtaaag aatctgcgcg atgtgataat tttgacaatg ttctccctgt 1081 cggtgttcgc gctgatgggg ctgcaaatct acatgggcgt gctaacgcag aagtgcatca 1141 agaagttccc gctggacggc tcctggggca acctgaccga cgagaactgg gcctatcaca 1201 atagcaacaa ctctaattgg tattcggaag acgacggtat atcctttccg ttgtgcggta 1261 atatctctgg agcggggcaa tgtgaagacg attacgtgtg tctgcagggg ttcgggccga 1321 acccgaacta tggctacacc agtttcgatt cgttcggttg ggcgtttctg tccgccttcc 1381 ggctgatgac gcaggacttc tgggaggatc tgtatcagct ggtgttgcgt gccgcaggac 1441 cctggcacat gctgttcttt atagtcatca tcttcctagg ttcattctat cttgtgaatt 1501 tgattttggc cattgttgcc atgtcgtatg acgaattgca aaagaaggcc gaagaagaag 1561 aggctgccga agaggaggcg atacgtgaag ccgaggaagc tgccgccgcc aaagcagcca 1621 agctggagga gcgcgccaat gcgcaggccc aggccgccgc cgatgcagct gccgccgaag 1681 aggcggctct tcatccggag atggccaaga gtccgacgta ttcgtgcatc agctatgagc 1741 tatttgtggg cggcgagaaa ggcaacgatg acaacaacaa ggagaagatg tccatacgca 1801 gcgttgaggt ggagtcggag tcggtgagcg ttatacaaag acaaccagca cctaccacag 1861 cacaccaagc taccaaagtt cgtaaagtga gcacgtacac gatccggaat ggacgtggac 1921 gctttggtat acccggcagc gatcgcaagc cgttggtatt gtcaacatat caggatgctc 1981 agcagcactt gccctatgcc gatgattcga acgctgttac gcccatgtcc gaggagaacg 2041 gtgccattat agtgcccgtt tattatggaa atctaggctc caggcattca tcgtatactt 2101 cgcatcagtc cagaatatcg tatacctcac atggcgatct attgggcggc atggccgtca 2161 tgggcgtcag cacaatgacc aaggagagca aattgcgaaa tcgcaactca cgcaatcaat 2221 cagtgggcgc caccaatggc ggcaccacct gcctggaccc caatcacaag gtcgagcatc 2281 gcgacttcga aatcggtctg gagtgcacgg acgaagctgg caagattaaa catcatgaca 2341 atccttttat cgagcccgtc cagacacaaa cggtagtcga catgaaagat gtgatggtac 2401 tgaatgacat tatcgaacag gccgctggtc ggcacagtcg ggctagtgat cgcggtgtct 2461 ccgtttacta tttcccaaca gaggacgatg atgaggatgg gccgacatta aaagacaagg 2521 ccctcgaagc gctaatgaaa ggcatcgaag tgttttgtgt gtgggactgt tgctgggttt 2581 ggttgaaatt gcaggagtgg atatcgctga tcgtcttcga tccctttgtc gagctcttca 2641 tcacgctgtg cattgtggtc aacacgatgt tcatggccat ggaccatcac gacatgaaca 2701 aggagatgga acgcatcctt aagtgcggaa attatttctt cacggcaaca ttcgccattg 2761 aggcaaccat gaaactgtgc gccatgagcc ccaaatacta tttccaggag ggctggaaca 2821 tctttgactt catcattgtg gcactctcat tgctggagct gggcctcgag ggcgttcagg 2881 gcctctccgt cttgcgttcg tttcgtttgc tgcgtgtatt caaattggcc aagtcctggc 2941 caacacttaa tttactcatt tcgattatgg gacgcaccat gggcgctttg ggtaatctga 3001 catttgtact ttgcattatc atcttcatct ttgcggtgat gggaatgcaa ctgttcggaa 3061 agaattatca tgataacaag gatcgcttcc cggacggtga cctgccccgc tggaacttca 3121 ccgacttcat gcacagcttc atgatcgtgt ttcgggtgct atgcggcgag tggatcgagt 3181 ccatgtggga ctgtatgcac gtgggcgatg tatcgtgcat tccattcttc ttggccaccg 3241 ttgtcatcgg caatttagtg gttcttaacc ttttcttagc cctgcttttg tcaaattttg 3301 gttcatctag cttatcagcg ccgacagccg ataacgatac caataaaata gccgaggcct 3361 tcaatcgaat tgggcgattt aaaagttggg ttaagcgtaa tattgctgat tgtttcaagt 3421 taatacgtaa caaattgaca aatcaaataa gtgatcaacc atcaggcaaa ggcgtttgtc 3481 gttgtatatc tgcagagcac ggcgacaacg agctggagct gggccacgac gagatactcg 3541 ccgacgggct catcaagaag ggcatcaagg aggcgacaca gctggaggtg gccatcggtg 3601 atggcatgga gttcacgata cacggcgaca tgaagaacaa caagccgaag aaatccaaat 3661 atctaaataa cgcaacgatg attggcaact caattaacca ccaagacaat agactggaac 3721 acgagctaaa ccatagaggt ttgtccttac aggacgacga cactgccagc attaactcat 3781 atggtagcca taagaatcga ccattcaagg atgagagcca caagggcagc gccgagacga 3841 tggagggcga ggagaagcgg gacgccagca aggaggattt aggtatcgat gaggagctcg 3901 acgaggaggg cgaattggag gagggcccgc tcgacggcga tatcatcata catgccaacg 3961 atgaggatat actcgatgaa tatccagctg attgctgccc cgattcgtac tataagaaat 4021 ttccgatctt agccggtgat gatgactcgc cgttctggca aggatggggc aatttacgac 4081 tgaaaacttt tcaattaatt gaaaataaat attttgaaac agctgttatc actatgattt 4141 taatgagtag cttagctttg gcattagaag atgtacatct gccacaaaga cccatactgc 4201 aggatatttt atactatatg gacagaatat ttacggttat attcttcttg gaaatgttaa 4261 tcaagtggct ggcgctcggc ttcaaagtgt acttcacgaa cgcgtggtgc tggctcgatt 4321 tcgtcattgt catggtatcg cttatcaact tcgttgcttc acttgttgga gctggtggta 4381 ttcaagcctt caagactatg cgaacgttaa gagcactgag accactacgt gccatgtccc 4441 gtatgcaggg catgagggtc gtcgttaatg cgctggtaca agctataccg tccatcttca 4501 atgtgctatt ggtgtgtcta atattttggc taatttttgc cataatgggt gtacagcttt 4561 ttgctggaaa atattttaag tgcgaggaca tgaatggcac gaagctcagc cacgagatca 4621 taccaaatcg caatgcctgc gaaagcgaga actacacgtg ggtgaattca gcaatgaatt 4681 tcgatcatgt aggtaacgcg tatctgtgcc ttttccaagt ggccaccttc aaaggctgga 4741 tacaaatcat gaacgatgct atcgattcac gagaggtgga caagcagcca attcgtgaaa 4801 cgaacatcta catgtattta tatttcgtat tcttcatcat atttggatca tttttcacac 4861 tcaatctgtt cattggtgtt atcattgata attttaatga gcaaaagaaa aaagcaggtg 4921 gatcattaga aatgttcatg acagaagatc agaaaaagta ctataatgct atgaaaaaga 4981 tgggctctaa aaaaccatta aaagccattc caagaccaag gtggcgtcca caagcaatag 5041 tctttgaaat agtaaccgat aagaaattcg atatagtcat aatgttattc attggtctga 5101 acatgttcac catgacactc gatcgttacg atgcgtcgga cacgtacaac gcggtccttg 5161 actatctcaa tgcgatattc gtagttattt tcagttccga atgtctatta aaaatattcg 5221 ctttacgata tcactatttt attgagccat ggaatttatt tgatgtagta gttgtcattt 5281 tatccatctt aggtctcgta cttagcgata ttatcgagaa atacttcgta tcgccgacac 5341 tgctccgagt ggtgcgcgtg gccaaagtgg gtcgcgtact gcgtctggtg aagggcgcca 5401 agggtatacg aacgctgctg ttcgccctgg ccatgtcgct gccggcgctg ttcaacatct 5461 gcctgctgct gttcctggtc atgttcatct tcgcgatatt cggcatgtcg ttcttcatgc 5521 atgtgaagga gaagagcggc atcaacgacg tctacaactt caagacgttc ggacagagca 5581 tgatcctgct ctttcagatg tctacctcag ccggttggga tggtgtactc gacgccatta 5641 tcaatgagga agcatgcgat ccacccgaca acgacaaagg ctatccgggc aattgtggtt 5701 cagcgaccgt tggaataacg tttctcctct catacctagt tataagcttt ttgatagtta 5761 ttaatatgta cattgctgtc attctcgaga actatagtca ggccaccgag gatgtgcagg 5821 agggtctcac cgacgacgat tacgatatgt actatgagat ctggcaacag ttcgatccgg 5881 agggcaccca gtacatacga tacgaccagc tgtccgagtt cctcgacgtg ctggagcccc 5941 cgctccagat tcacaagccc aacaagtaca aaatcatatc gatggacata cccatctgtc 6001 gcggtgacct catgtactgt gtggacatac tggacgcact gaccaaagac tttttcgcgc 6061 gcaaaggcaa tcccattgag gagacgggcg agattggtga gattgccgcc aggccggaca 6121 ccgagggcta cgagcccgtc tcctccaccc tctggcgaca gcgggaggag tactgtgccc 6181 gcctcattca acatgcctgg cgcaagcata aaacgcgcgc cgagggcggt ggtgcaccgt 6241 ccgacgcgga aggcgacggc cccgaagatg gtgatgcggg tggcggtggc ggggcggcgc 6301 tgatgctggg tgttctggat gttccagatg ctgctggcga tgcagcaacc actggctccc 6361 atgacggggc aacggcactc gatcccgaga ccgatccatc gggagtaccg gcggcagcgg 6421 cggtggcccc acagccagcc ggtgacggcg gcgagggacc ggatggagga gcaacagccg 6481 atccgcacga gagcaatgta aatagtccga cgatggacgg cgcgacggcg ggcagcccgg 6541 gcgcagggag cgctggcagc actggccgac agacggccgt tctcgtggag agcgatgggt 6601 ttgtgaccaa gaacgggcac aaggttgtaa tacactcgcg ttcgccgagc ataacgtcgc 6661 gcacggcgga tgtctgagcc aggcctcgcc cccccctcca agatgcacgc gagtattagg 6721 tgcaggtgca gatgcagtgc agtggtggtg ccacaacaac aacaacaaca acagcaggtg 6781 ccactggtag ctgcaattgc aactgcaaca gcagcaacag gaagaa