PREDICTED: Drosophila obscura sodium channel protein para
LOCUS XM_041592000 6826 bp mRNA linear INV 14-MAY-2021
(LOC111070739), transcript variant X17, mRNA.
ACCESSION XM_041592000
VERSION XM_041592000.1
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..6826
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..6826
/gene="LOC111070739"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 45 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 5 samples with support for all annotated
introns"
/db_xref="GeneID:111070739"
CDS 237..6677
/gene="LOC111070739"
/codon_start=1
/product="sodium channel protein para isoform X17"
/protein_id="XP_041447934.1"
/db_xref="GeneID:111070739"
/translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK
RAEGEPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLE
DIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIIT
TILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDF
VVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIIL
TMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDG
ISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDL
YQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIR
EAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEK
GNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTYTIRNGRGRFGIP
GSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLGSRHSSYTSHQ
SRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTTCLDPNHKVEHR
DFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDRG
VSVYYFPTEDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQEWISLIVFDPFV
ELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATMKLCAMSPKYYF
QEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISIMGRT
MGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNFTDFMHSFMIVF
RVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGSSSLSAPT
ADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSGKGVCRCISAEH
GDNELELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNNKPKKSKYLNNA
TMIGNSINHQDNRLEHELNHRGLSLQDDDTASINSYGSHKNRPFKDESHKGSAETMEG
EEKRDASKEDLGIDEELDEEGELEEGPLDGDIIIHANDEDILDEYPADCCPDSYYKKF
PILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAVITMILMSSLALALEDVHLPQRPI
LQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVIVMVSLINFVASLVG
AGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAI
MGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQ
VATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDN
FNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRPQAIVFEIVTDKK
FDIVIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSSECLLKIFALRYHYF
IEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIRT
LLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMIL
LFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLLSYLVISFLIVI
NMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEFLDVLE
PPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGNPIEETGEIGEIAA
RPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKTRAEGGGAPSDAEGDGPEDGDAGG
GGGAALMLGVLDVPDAAGDAATTGSHDGATALDPETDPSGVPAAAAVAPQPAGDGGEG
PDGGATADPHESNVNSPTMDGATAGSPGAGSAGSTGRQTAVLVESDGFVTKNGHKVVI
HSRSPSITSRTADV"
misc_feature 687..1541
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 1890..2390
/gene="LOC111070739"
/note="Cytoplasmic domain of voltage-gated Na+ ion
channel; Region: Na_trans_cytopl; pfam11933"
/db_xref="CDD:463401"
misc_feature 2619..3254
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 3330..4094
/gene="LOC111070739"
/note="Sodium ion transport-associated; Region:
Na_trans_assoc; pfam06512"
/db_xref="CDD:461936"
misc_feature 4104..4919
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 4887..5045
/gene="LOC111070739"
/note="Inactivation gate of the voltage-gated sodium
channel alpha subunits; Region: Na_channel_gate; cd13433"
/db_xref="CDD:240441"
misc_feature 4932..4943
/gene="LOC111070739"
/note="putative hydrophobic latch; other site"
/db_xref="CDD:240441"
misc_feature 5067..5819
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 5850..5993
/gene="LOC111070739"
/note="Voltage-dependent L-type calcium channel,
IQ-associated; Region: GPHH; pfam16905"
/db_xref="CDD:465306"
ORIGIN
1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca
61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg
121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac
181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga
241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg
301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg
361 aaagaaagag agccgaggga gagccgcaat atggtcgcaa gaaaaaacaa aaagaaatcc
421 gatatgatga cgaggacgag gatgaaggtc cacaaccgga tcctacactt gaacagggtg
481 tgccaatacc tgttcgactg cagggcagct tccctccgga attggcctcc actcccctcg
541 aggatatcga tcccttctac agcaatatac tgacattcgt agttgtaagc aaaggaaaag
601 atatttttcg cttttctgca tcaaaagcaa tgtggctgct cgatccattc aatccgatac
661 gtcgtgtggc catttacatt ttagtgcatc cactattttc gttattcatc attaccacaa
721 ttctcgtcaa ctgcatcctg atgataatgc cgacaacgcc cacagttgag tccactgagg
781 tgatattcac cggaatctac acatttgaat cagctgttaa agtgatggca cgaggtttca
841 ttttatgccc gtttacgtat cttagagatg catggaattg gctggacttc gtagtaatag
901 ctttagctta tgtgaccatg ggtatagatt taggtaatct tgcagccttg cgaacgttta
961 gggtgctgcg agcgcttaaa accgtagcca ttgtgccagg cttgaagacc attgtcggtg
1021 cggtcatcga atctgtaaag aatctgcgcg atgtgataat tttgacaatg ttctccctgt
1081 cggtgttcgc gctgatgggg ctgcaaatct acatgggcgt gctaacgcag aagtgcatca
1141 agaagttccc gctggacggc tcctggggca acctgaccga cgagaactgg gcctatcaca
1201 atagcaacaa ctctaattgg tattcggaag acgacggtat atcctttccg ttgtgcggta
1261 atatctctgg agcggggcaa tgtgaagacg attacgtgtg tctgcagggg ttcgggccga
1321 acccgaacta tggctacacc agtttcgatt cgttcggttg ggcgtttctg tccgccttcc
1381 ggctgatgac gcaggacttc tgggaggatc tgtatcagct ggtgttgcgt gccgcaggac
1441 cctggcacat gctgttcttt atagtcatca tcttcctagg ttcattctat cttgtgaatt
1501 tgattttggc cattgttgcc atgtcgtatg acgaattgca aaagaaggcc gaagaagaag
1561 aggctgccga agaggaggcg atacgtgaag ccgaggaagc tgccgccgcc aaagcagcca
1621 agctggagga gcgcgccaat gcgcaggccc aggccgccgc cgatgcagct gccgccgaag
1681 aggcggctct tcatccggag atggccaaga gtccgacgta ttcgtgcatc agctatgagc
1741 tatttgtggg cggcgagaaa ggcaacgatg acaacaacaa ggagaagatg tccatacgca
1801 gcgttgaggt ggagtcggag tcggtgagcg ttatacaaag acaaccagca cctaccacag
1861 cacaccaagc taccaaagtt cgtaaagtga gcacgtacac gatccggaat ggacgtggac
1921 gctttggtat acccggcagc gatcgcaagc cgttggtatt gtcaacatat caggatgctc
1981 agcagcactt gccctatgcc gatgattcga acgctgttac gcccatgtcc gaggagaacg
2041 gtgccattat agtgcccgtt tattatggaa atctaggctc caggcattca tcgtatactt
2101 cgcatcagtc cagaatatcg tatacctcac atggcgatct attgggcggc atggccgtca
2161 tgggcgtcag cacaatgacc aaggagagca aattgcgaaa tcgcaactca cgcaatcaat
2221 cagtgggcgc caccaatggc ggcaccacct gcctggaccc caatcacaag gtcgagcatc
2281 gcgacttcga aatcggtctg gagtgcacgg acgaagctgg caagattaaa catcatgaca
2341 atccttttat cgagcccgtc cagacacaaa cggtagtcga catgaaagat gtgatggtac
2401 tgaatgacat tatcgaacag gccgctggtc ggcacagtcg ggctagtgat cgcggtgtct
2461 ccgtttacta tttcccaaca gaggacgatg atgaggatgg gccgacatta aaagacaagg
2521 ccctcgaagc gctaatgaaa ggcatcgaag tgttttgtgt gtgggactgt tgctgggttt
2581 ggttgaaatt gcaggagtgg atatcgctga tcgtcttcga tccctttgtc gagctcttca
2641 tcacgctgtg cattgtggtc aacacgatgt tcatggccat ggaccatcac gacatgaaca
2701 aggagatgga acgcatcctt aagtgcggaa attatttctt cacggcaaca ttcgccattg
2761 aggcaaccat gaaactgtgc gccatgagcc ccaaatacta tttccaggag ggctggaaca
2821 tctttgactt catcattgtg gcactctcat tgctggagct gggcctcgag ggcgttcagg
2881 gcctctccgt cttgcgttcg tttcgtttgc tgcgtgtatt caaattggcc aagtcctggc
2941 caacacttaa tttactcatt tcgattatgg gacgcaccat gggcgctttg ggtaatctga
3001 catttgtact ttgcattatc atcttcatct ttgcggtgat gggaatgcaa ctgttcggaa
3061 agaattatca tgataacaag gatcgcttcc cggacggtga cctgccccgc tggaacttca
3121 ccgacttcat gcacagcttc atgatcgtgt ttcgggtgct atgcggcgag tggatcgagt
3181 ccatgtggga ctgtatgcac gtgggcgatg tatcgtgcat tccattcttc ttggccaccg
3241 ttgtcatcgg caatttagtg gttcttaacc ttttcttagc cctgcttttg tcaaattttg
3301 gttcatctag cttatcagcg ccgacagccg ataacgatac caataaaata gccgaggcct
3361 tcaatcgaat tgggcgattt aaaagttggg ttaagcgtaa tattgctgat tgtttcaagt
3421 taatacgtaa caaattgaca aatcaaataa gtgatcaacc atcaggcaaa ggcgtttgtc
3481 gttgtatatc tgcagagcac ggcgacaacg agctggagct gggccacgac gagatactcg
3541 ccgacgggct catcaagaag ggcatcaagg aggcgacaca gctggaggtg gccatcggtg
3601 atggcatgga gttcacgata cacggcgaca tgaagaacaa caagccgaag aaatccaaat
3661 atctaaataa cgcaacgatg attggcaact caattaacca ccaagacaat agactggaac
3721 acgagctaaa ccatagaggt ttgtccttac aggacgacga cactgccagc attaactcat
3781 atggtagcca taagaatcga ccattcaagg atgagagcca caagggcagc gccgagacga
3841 tggagggcga ggagaagcgg gacgccagca aggaggattt aggtatcgat gaggagctcg
3901 acgaggaggg cgaattggag gagggcccgc tcgacggcga tatcatcata catgccaacg
3961 atgaggatat actcgatgaa tatccagctg attgctgccc cgattcgtac tataagaaat
4021 ttccgatctt agccggtgat gatgactcgc cgttctggca aggatggggc aatttacgac
4081 tgaaaacttt tcaattaatt gaaaataaat attttgaaac agctgttatc actatgattt
4141 taatgagtag cttagctttg gcattagaag atgtacatct gccacaaaga cccatactgc
4201 aggatatttt atactatatg gacagaatat ttacggttat attcttcttg gaaatgttaa
4261 tcaagtggct ggcgctcggc ttcaaagtgt acttcacgaa cgcgtggtgc tggctcgatt
4321 tcgtcattgt catggtatcg cttatcaact tcgttgcttc acttgttgga gctggtggta
4381 ttcaagcctt caagactatg cgaacgttaa gagcactgag accactacgt gccatgtccc
4441 gtatgcaggg catgagggtc gtcgttaatg cgctggtaca agctataccg tccatcttca
4501 atgtgctatt ggtgtgtcta atattttggc taatttttgc cataatgggt gtacagcttt
4561 ttgctggaaa atattttaag tgcgaggaca tgaatggcac gaagctcagc cacgagatca
4621 taccaaatcg caatgcctgc gaaagcgaga actacacgtg ggtgaattca gcaatgaatt
4681 tcgatcatgt aggtaacgcg tatctgtgcc ttttccaagt ggccaccttc aaaggctgga
4741 tacaaatcat gaacgatgct atcgattcac gagaggtgga caagcagcca attcgtgaaa
4801 cgaacatcta catgtattta tatttcgtat tcttcatcat atttggatca tttttcacac
4861 tcaatctgtt cattggtgtt atcattgata attttaatga gcaaaagaaa aaagcaggtg
4921 gatcattaga aatgttcatg acagaagatc agaaaaagta ctataatgct atgaaaaaga
4981 tgggctctaa aaaaccatta aaagccattc caagaccaag gtggcgtcca caagcaatag
5041 tctttgaaat agtaaccgat aagaaattcg atatagtcat aatgttattc attggtctga
5101 acatgttcac catgacactc gatcgttacg atgcgtcgga cacgtacaac gcggtccttg
5161 actatctcaa tgcgatattc gtagttattt tcagttccga atgtctatta aaaatattcg
5221 ctttacgata tcactatttt attgagccat ggaatttatt tgatgtagta gttgtcattt
5281 tatccatctt aggtctcgta cttagcgata ttatcgagaa atacttcgta tcgccgacac
5341 tgctccgagt ggtgcgcgtg gccaaagtgg gtcgcgtact gcgtctggtg aagggcgcca
5401 agggtatacg aacgctgctg ttcgccctgg ccatgtcgct gccggcgctg ttcaacatct
5461 gcctgctgct gttcctggtc atgttcatct tcgcgatatt cggcatgtcg ttcttcatgc
5521 atgtgaagga gaagagcggc atcaacgacg tctacaactt caagacgttc ggacagagca
5581 tgatcctgct ctttcagatg tctacctcag ccggttggga tggtgtactc gacgccatta
5641 tcaatgagga agcatgcgat ccacccgaca acgacaaagg ctatccgggc aattgtggtt
5701 cagcgaccgt tggaataacg tttctcctct catacctagt tataagcttt ttgatagtta
5761 ttaatatgta cattgctgtc attctcgaga actatagtca ggccaccgag gatgtgcagg
5821 agggtctcac cgacgacgat tacgatatgt actatgagat ctggcaacag ttcgatccgg
5881 agggcaccca gtacatacga tacgaccagc tgtccgagtt cctcgacgtg ctggagcccc
5941 cgctccagat tcacaagccc aacaagtaca aaatcatatc gatggacata cccatctgtc
6001 gcggtgacct catgtactgt gtggacatac tggacgcact gaccaaagac tttttcgcgc
6061 gcaaaggcaa tcccattgag gagacgggcg agattggtga gattgccgcc aggccggaca
6121 ccgagggcta cgagcccgtc tcctccaccc tctggcgaca gcgggaggag tactgtgccc
6181 gcctcattca acatgcctgg cgcaagcata aaacgcgcgc cgagggcggt ggtgcaccgt
6241 ccgacgcgga aggcgacggc cccgaagatg gtgatgcggg tggcggtggc ggggcggcgc
6301 tgatgctggg tgttctggat gttccagatg ctgctggcga tgcagcaacc actggctccc
6361 atgacggggc aacggcactc gatcccgaga ccgatccatc gggagtaccg gcggcagcgg
6421 cggtggcccc acagccagcc ggtgacggcg gcgagggacc ggatggagga gcaacagccg
6481 atccgcacga gagcaatgta aatagtccga cgatggacgg cgcgacggcg ggcagcccgg
6541 gcgcagggag cgctggcagc actggccgac agacggccgt tctcgtggag agcgatgggt
6601 ttgtgaccaa gaacgggcac aaggttgtaa tacactcgcg ttcgccgagc ataacgtcgc
6661 gcacggcgga tgtctgagcc aggcctcgcc cccccctcca agatgcacgc gagtattagg
6721 tgcaggtgca gatgcagtgc agtggtggtg ccacaacaac aacaacaaca acagcaggtg
6781 ccactggtag ctgcaattgc aactgcaaca gcagcaacag gaagaa