PREDICTED: Drosophila obscura sodium channel protein para
LOCUS XM_041591999 6835 bp mRNA linear INV 14-MAY-2021
(LOC111070739), transcript variant X14, mRNA.
ACCESSION XM_041591999
VERSION XM_041591999.1
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..6835
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..6835
/gene="LOC111070739"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 47 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 7 samples with support for all annotated
introns"
/db_xref="GeneID:111070739"
CDS 237..6686
/gene="LOC111070739"
/codon_start=1
/product="sodium channel protein para isoform X14"
/protein_id="XP_041447933.1"
/db_xref="GeneID:111070739"
/translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK
RAEGEPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLE
DIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIIT
TILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDF
VVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIIL
TMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDG
ISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDL
YQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIR
EAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEK
GNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTYTIRNGRGRFGIP
GSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLGSRHSSYTSHQ
SRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTTCLDPNHKVEHR
DFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDRG
VSVYYFPTEDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQEWISLIVFDPFV
ELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATMKLCAMSPKYYF
QEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISIMGRT
MGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNFTDFMHSFMIVF
RVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGSSSLSAPT
ADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSGERTNQISWIWS
EEHGDNELELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNNKPKKSKYL
NNATMIGNSINHQDNRLEHELNHRGLSLQDDDTASINSYGSHKNRPFKDESHKGSAET
MEGEEKRDASKEDLGIDEELDEEGELEEGPLDGDIIIHANDEDILDEYPADCCPDSYY
KKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAVITMILMSSLALALEDVHLPQ
RPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVIVMVSLINFVAS
LVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLI
FAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLC
LFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLFIGVI
IDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRPQAIVFEIVT
DKKFDIVIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSSECLLKIFALRY
HYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGRVLRLVKGAKG
IRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQS
MILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLLSYLVISFL
IVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEFLD
VLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGNPIEETGEIGE
IAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKTRAEGGGAPSDAEGDGPEDGD
AGGGGGAALMLGVLDVPDAAGDAATTGSHDGATALDPETDPSGVPAAAAVAPQPAGDG
GEGPDGGATADPHESNVNSPTMDGATAGSPGAGSAGSTGRQTAVLVESDGFVTKNGHK
VVIHSRSPSITSRTADV"
misc_feature 687..1541
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 1890..2390
/gene="LOC111070739"
/note="Cytoplasmic domain of voltage-gated Na+ ion
channel; Region: Na_trans_cytopl; pfam11933"
/db_xref="CDD:463401"
misc_feature 2619..3254
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 3330..4103
/gene="LOC111070739"
/note="Sodium ion transport-associated; Region:
Na_trans_assoc; pfam06512"
/db_xref="CDD:461936"
misc_feature 4113..4928
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 4896..5054
/gene="LOC111070739"
/note="Inactivation gate of the voltage-gated sodium
channel alpha subunits; Region: Na_channel_gate; cd13433"
/db_xref="CDD:240441"
misc_feature 4941..4952
/gene="LOC111070739"
/note="putative hydrophobic latch; other site"
/db_xref="CDD:240441"
misc_feature 5076..5828
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 5859..6002
/gene="LOC111070739"
/note="Voltage-dependent L-type calcium channel,
IQ-associated; Region: GPHH; pfam16905"
/db_xref="CDD:465306"
ORIGIN
1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca
61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg
121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac
181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga
241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg
301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg
361 aaagaaagag agccgaggga gagccgcaat atggtcgcaa gaaaaaacaa aaagaaatcc
421 gatatgatga cgaggacgag gatgaaggtc cacaaccgga tcctacactt gaacagggtg
481 tgccaatacc tgttcgactg cagggcagct tccctccgga attggcctcc actcccctcg
541 aggatatcga tcccttctac agcaatatac tgacattcgt agttgtaagc aaaggaaaag
601 atatttttcg cttttctgca tcaaaagcaa tgtggctgct cgatccattc aatccgatac
661 gtcgtgtggc catttacatt ttagtgcatc cactattttc gttattcatc attaccacaa
721 ttctcgtcaa ctgcatcctg atgataatgc cgacaacgcc cacagttgag tccactgagg
781 tgatattcac cggaatctac acatttgaat cagctgttaa agtgatggca cgaggtttca
841 ttttatgccc gtttacgtat cttagagatg catggaattg gctggacttc gtagtaatag
901 ctttagctta tgtgaccatg ggtatagatt taggtaatct tgcagccttg cgaacgttta
961 gggtgctgcg agcgcttaaa accgtagcca ttgtgccagg cttgaagacc attgtcggtg
1021 cggtcatcga atctgtaaag aatctgcgcg atgtgataat tttgacaatg ttctccctgt
1081 cggtgttcgc gctgatgggg ctgcaaatct acatgggcgt gctaacgcag aagtgcatca
1141 agaagttccc gctggacggc tcctggggca acctgaccga cgagaactgg gcctatcaca
1201 atagcaacaa ctctaattgg tattcggaag acgacggtat atcctttccg ttgtgcggta
1261 atatctctgg agcggggcaa tgtgaagacg attacgtgtg tctgcagggg ttcgggccga
1321 acccgaacta tggctacacc agtttcgatt cgttcggttg ggcgtttctg tccgccttcc
1381 ggctgatgac gcaggacttc tgggaggatc tgtatcagct ggtgttgcgt gccgcaggac
1441 cctggcacat gctgttcttt atagtcatca tcttcctagg ttcattctat cttgtgaatt
1501 tgattttggc cattgttgcc atgtcgtatg acgaattgca aaagaaggcc gaagaagaag
1561 aggctgccga agaggaggcg atacgtgaag ccgaggaagc tgccgccgcc aaagcagcca
1621 agctggagga gcgcgccaat gcgcaggccc aggccgccgc cgatgcagct gccgccgaag
1681 aggcggctct tcatccggag atggccaaga gtccgacgta ttcgtgcatc agctatgagc
1741 tatttgtggg cggcgagaaa ggcaacgatg acaacaacaa ggagaagatg tccatacgca
1801 gcgttgaggt ggagtcggag tcggtgagcg ttatacaaag acaaccagca cctaccacag
1861 cacaccaagc taccaaagtt cgtaaagtga gcacgtacac gatccggaat ggacgtggac
1921 gctttggtat acccggcagc gatcgcaagc cgttggtatt gtcaacatat caggatgctc
1981 agcagcactt gccctatgcc gatgattcga acgctgttac gcccatgtcc gaggagaacg
2041 gtgccattat agtgcccgtt tattatggaa atctaggctc caggcattca tcgtatactt
2101 cgcatcagtc cagaatatcg tatacctcac atggcgatct attgggcggc atggccgtca
2161 tgggcgtcag cacaatgacc aaggagagca aattgcgaaa tcgcaactca cgcaatcaat
2221 cagtgggcgc caccaatggc ggcaccacct gcctggaccc caatcacaag gtcgagcatc
2281 gcgacttcga aatcggtctg gagtgcacgg acgaagctgg caagattaaa catcatgaca
2341 atccttttat cgagcccgtc cagacacaaa cggtagtcga catgaaagat gtgatggtac
2401 tgaatgacat tatcgaacag gccgctggtc ggcacagtcg ggctagtgat cgcggtgtct
2461 ccgtttacta tttcccaaca gaggacgatg atgaggatgg gccgacatta aaagacaagg
2521 ccctcgaagc gctaatgaaa ggcatcgaag tgttttgtgt gtgggactgt tgctgggttt
2581 ggttgaaatt gcaggagtgg atatcgctga tcgtcttcga tccctttgtc gagctcttca
2641 tcacgctgtg cattgtggtc aacacgatgt tcatggccat ggaccatcac gacatgaaca
2701 aggagatgga acgcatcctt aagtgcggaa attatttctt cacggcaaca ttcgccattg
2761 aggcaaccat gaaactgtgc gccatgagcc ccaaatacta tttccaggag ggctggaaca
2821 tctttgactt catcattgtg gcactctcat tgctggagct gggcctcgag ggcgttcagg
2881 gcctctccgt cttgcgttcg tttcgtttgc tgcgtgtatt caaattggcc aagtcctggc
2941 caacacttaa tttactcatt tcgattatgg gacgcaccat gggcgctttg ggtaatctga
3001 catttgtact ttgcattatc atcttcatct ttgcggtgat gggaatgcaa ctgttcggaa
3061 agaattatca tgataacaag gatcgcttcc cggacggtga cctgccccgc tggaacttca
3121 ccgacttcat gcacagcttc atgatcgtgt ttcgggtgct atgcggcgag tggatcgagt
3181 ccatgtggga ctgtatgcac gtgggcgatg tatcgtgcat tccattcttc ttggccaccg
3241 ttgtcatcgg caatttagtg gttcttaacc ttttcttagc cctgcttttg tcaaattttg
3301 gttcatctag cttatcagcg ccgacagccg ataacgatac caataaaata gccgaggcct
3361 tcaatcgaat tgggcgattt aaaagttggg ttaagcgtaa tattgctgat tgtttcaagt
3421 taatacgtaa caaattgaca aatcaaataa gtgatcaacc atcaggtgag aggaccaacc
3481 agatcagttg gatttggagc gaagagcacg gcgacaacga gctggagctg ggccacgacg
3541 agatactcgc cgacgggctc atcaagaagg gcatcaagga ggcgacacag ctggaggtgg
3601 ccatcggtga tggcatggag ttcacgatac acggcgacat gaagaacaac aagccgaaga
3661 aatccaaata tctaaataac gcaacgatga ttggcaactc aattaaccac caagacaata
3721 gactggaaca cgagctaaac catagaggtt tgtccttaca ggacgacgac actgccagca
3781 ttaactcata tggtagccat aagaatcgac cattcaagga tgagagccac aagggcagcg
3841 ccgagacgat ggagggcgag gagaagcggg acgccagcaa ggaggattta ggtatcgatg
3901 aggagctcga cgaggagggc gaattggagg agggcccgct cgacggcgat atcatcatac
3961 atgccaacga tgaggatata ctcgatgaat atccagctga ttgctgcccc gattcgtact
4021 ataagaaatt tccgatctta gccggtgatg atgactcgcc gttctggcaa ggatggggca
4081 atttacgact gaaaactttt caattaattg aaaataaata ttttgaaaca gctgttatca
4141 ctatgatttt aatgagtagc ttagctttgg cattagaaga tgtacatctg ccacaaagac
4201 ccatactgca ggatatttta tactatatgg acagaatatt tacggttata ttcttcttgg
4261 aaatgttaat caagtggctg gcgctcggct tcaaagtgta cttcacgaac gcgtggtgct
4321 ggctcgattt cgtcattgtc atggtatcgc ttatcaactt cgttgcttca cttgttggag
4381 ctggtggtat tcaagccttc aagactatgc gaacgttaag agcactgaga ccactacgtg
4441 ccatgtcccg tatgcagggc atgagggtcg tcgttaatgc gctggtacaa gctataccgt
4501 ccatcttcaa tgtgctattg gtgtgtctaa tattttggct aatttttgcc ataatgggtg
4561 tacagctttt tgctggaaaa tattttaagt gcgaggacat gaatggcacg aagctcagcc
4621 acgagatcat accaaatcgc aatgcctgcg aaagcgagaa ctacacgtgg gtgaattcag
4681 caatgaattt cgatcatgta ggtaacgcgt atctgtgcct tttccaagtg gccaccttca
4741 aaggctggat acaaatcatg aacgatgcta tcgattcacg agaggtggac aagcagccaa
4801 ttcgtgaaac gaacatctac atgtatttat atttcgtatt cttcatcata tttggatcat
4861 ttttcacact caatctgttc attggtgtta tcattgataa ttttaatgag caaaagaaaa
4921 aagcaggtgg atcattagaa atgttcatga cagaagatca gaaaaagtac tataatgcta
4981 tgaaaaagat gggctctaaa aaaccattaa aagccattcc aagaccaagg tggcgtccac
5041 aagcaatagt ctttgaaata gtaaccgata agaaattcga tatagtcata atgttattca
5101 ttggtctgaa catgttcacc atgacactcg atcgttacga tgcgtcggac acgtacaacg
5161 cggtccttga ctatctcaat gcgatattcg tagttatttt cagttccgaa tgtctattaa
5221 aaatattcgc tttacgatat cactatttta ttgagccatg gaatttattt gatgtagtag
5281 ttgtcatttt atccatctta ggtctcgtac ttagcgatat tatcgagaaa tacttcgtat
5341 cgccgacact gctccgagtg gtgcgcgtgg ccaaagtggg tcgcgtactg cgtctggtga
5401 agggcgccaa gggtatacga acgctgctgt tcgccctggc catgtcgctg ccggcgctgt
5461 tcaacatctg cctgctgctg ttcctggtca tgttcatctt cgcgatattc ggcatgtcgt
5521 tcttcatgca tgtgaaggag aagagcggca tcaacgacgt ctacaacttc aagacgttcg
5581 gacagagcat gatcctgctc tttcagatgt ctacctcagc cggttgggat ggtgtactcg
5641 acgccattat caatgaggaa gcatgcgatc cacccgacaa cgacaaaggc tatccgggca
5701 attgtggttc agcgaccgtt ggaataacgt ttctcctctc atacctagtt ataagctttt
5761 tgatagttat taatatgtac attgctgtca ttctcgagaa ctatagtcag gccaccgagg
5821 atgtgcagga gggtctcacc gacgacgatt acgatatgta ctatgagatc tggcaacagt
5881 tcgatccgga gggcacccag tacatacgat acgaccagct gtccgagttc ctcgacgtgc
5941 tggagccccc gctccagatt cacaagccca acaagtacaa aatcatatcg atggacatac
6001 ccatctgtcg cggtgacctc atgtactgtg tggacatact ggacgcactg accaaagact
6061 ttttcgcgcg caaaggcaat cccattgagg agacgggcga gattggtgag attgccgcca
6121 ggccggacac cgagggctac gagcccgtct cctccaccct ctggcgacag cgggaggagt
6181 actgtgcccg cctcattcaa catgcctggc gcaagcataa aacgcgcgcc gagggcggtg
6241 gtgcaccgtc cgacgcggaa ggcgacggcc ccgaagatgg tgatgcgggt ggcggtggcg
6301 gggcggcgct gatgctgggt gttctggatg ttccagatgc tgctggcgat gcagcaacca
6361 ctggctccca tgacggggca acggcactcg atcccgagac cgatccatcg ggagtaccgg
6421 cggcagcggc ggtggcccca cagccagccg gtgacggcgg cgagggaccg gatggaggag
6481 caacagccga tccgcacgag agcaatgtaa atagtccgac gatggacggc gcgacggcgg
6541 gcagcccggg cgcagggagc gctggcagca ctggccgaca gacggccgtt ctcgtggaga
6601 gcgatgggtt tgtgaccaag aacgggcaca aggttgtaat acactcgcgt tcgccgagca
6661 taacgtcgcg cacggcggat gtctgagcca ggcctcgccc ccccctccaa gatgcacgcg
6721 agtattaggt gcaggtgcag atgcagtgca gtggtggtgc cacaacaaca acaacaacaa
6781 cagcaggtgc cactggtagc tgcaattgca actgcaacag cagcaacagg aagaa