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LOCUS XM_041591999 6835 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X14, mRNA. ACCESSION XM_041591999 VERSION XM_041591999.1 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6835 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6835 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 47 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6686 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X14" /protein_id="XP_041447933.1" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLE DIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIIT TILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDF VVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIIL TMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDG ISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDL YQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIR EAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEK GNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTYTIRNGRGRFGIP GSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLGSRHSSYTSHQ SRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTTCLDPNHKVEHR DFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDRG VSVYYFPTEDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQEWISLIVFDPFV ELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATMKLCAMSPKYYF QEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISIMGRT MGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNFTDFMHSFMIVF RVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGSSSLSAPT ADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSGERTNQISWIWS EEHGDNELELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNNKPKKSKYL NNATMIGNSINHQDNRLEHELNHRGLSLQDDDTASINSYGSHKNRPFKDESHKGSAET MEGEEKRDASKEDLGIDEELDEEGELEEGPLDGDIIIHANDEDILDEYPADCCPDSYY KKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAVITMILMSSLALALEDVHLPQ RPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVIVMVSLINFVAS LVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLI FAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLC LFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLFIGVI IDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRPQAIVFEIVT DKKFDIVIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSSECLLKIFALRY HYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGRVLRLVKGAKG IRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQS MILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLLSYLVISFL IVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEFLD VLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGNPIEETGEIGE IAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKTRAEGGGAPSDAEGDGPEDGD AGGGGGAALMLGVLDVPDAAGDAATTGSHDGATALDPETDPSGVPAAAAVAPQPAGDG GEGPDGGATADPHESNVNSPTMDGATAGSPGAGSAGSTGRQTAVLVESDGFVTKNGHK VVIHSRSPSITSRTADV" misc_feature 687..1541 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1890..2390 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2619..3254 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3330..4103 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4113..4928 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4896..5054 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 4941..4952 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 5076..5828 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5859..6002 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gagccgcaat atggtcgcaa gaaaaaacaa aaagaaatcc 421 gatatgatga cgaggacgag gatgaaggtc cacaaccgga tcctacactt gaacagggtg 481 tgccaatacc tgttcgactg cagggcagct tccctccgga attggcctcc actcccctcg 541 aggatatcga tcccttctac agcaatatac tgacattcgt agttgtaagc aaaggaaaag 601 atatttttcg cttttctgca tcaaaagcaa tgtggctgct cgatccattc aatccgatac 661 gtcgtgtggc catttacatt ttagtgcatc cactattttc gttattcatc attaccacaa 721 ttctcgtcaa ctgcatcctg atgataatgc cgacaacgcc cacagttgag tccactgagg 781 tgatattcac cggaatctac acatttgaat cagctgttaa agtgatggca cgaggtttca 841 ttttatgccc gtttacgtat cttagagatg catggaattg gctggacttc gtagtaatag 901 ctttagctta tgtgaccatg ggtatagatt taggtaatct tgcagccttg cgaacgttta 961 gggtgctgcg agcgcttaaa accgtagcca ttgtgccagg cttgaagacc attgtcggtg 1021 cggtcatcga atctgtaaag aatctgcgcg atgtgataat tttgacaatg ttctccctgt 1081 cggtgttcgc gctgatgggg ctgcaaatct acatgggcgt gctaacgcag aagtgcatca 1141 agaagttccc gctggacggc tcctggggca acctgaccga cgagaactgg gcctatcaca 1201 atagcaacaa ctctaattgg tattcggaag acgacggtat atcctttccg ttgtgcggta 1261 atatctctgg agcggggcaa tgtgaagacg attacgtgtg tctgcagggg ttcgggccga 1321 acccgaacta tggctacacc agtttcgatt cgttcggttg ggcgtttctg tccgccttcc 1381 ggctgatgac gcaggacttc tgggaggatc tgtatcagct ggtgttgcgt gccgcaggac 1441 cctggcacat gctgttcttt atagtcatca tcttcctagg ttcattctat cttgtgaatt 1501 tgattttggc cattgttgcc atgtcgtatg acgaattgca aaagaaggcc gaagaagaag 1561 aggctgccga agaggaggcg atacgtgaag ccgaggaagc tgccgccgcc aaagcagcca 1621 agctggagga gcgcgccaat gcgcaggccc aggccgccgc cgatgcagct gccgccgaag 1681 aggcggctct tcatccggag atggccaaga gtccgacgta ttcgtgcatc agctatgagc 1741 tatttgtggg cggcgagaaa ggcaacgatg acaacaacaa ggagaagatg tccatacgca 1801 gcgttgaggt ggagtcggag tcggtgagcg ttatacaaag acaaccagca cctaccacag 1861 cacaccaagc taccaaagtt cgtaaagtga gcacgtacac gatccggaat ggacgtggac 1921 gctttggtat acccggcagc gatcgcaagc cgttggtatt gtcaacatat caggatgctc 1981 agcagcactt gccctatgcc gatgattcga acgctgttac gcccatgtcc gaggagaacg 2041 gtgccattat agtgcccgtt tattatggaa atctaggctc caggcattca tcgtatactt 2101 cgcatcagtc cagaatatcg tatacctcac atggcgatct attgggcggc atggccgtca 2161 tgggcgtcag cacaatgacc aaggagagca aattgcgaaa tcgcaactca cgcaatcaat 2221 cagtgggcgc caccaatggc ggcaccacct gcctggaccc caatcacaag gtcgagcatc 2281 gcgacttcga aatcggtctg gagtgcacgg acgaagctgg caagattaaa catcatgaca 2341 atccttttat cgagcccgtc cagacacaaa cggtagtcga catgaaagat gtgatggtac 2401 tgaatgacat tatcgaacag gccgctggtc ggcacagtcg ggctagtgat cgcggtgtct 2461 ccgtttacta tttcccaaca gaggacgatg atgaggatgg gccgacatta aaagacaagg 2521 ccctcgaagc gctaatgaaa ggcatcgaag tgttttgtgt gtgggactgt tgctgggttt 2581 ggttgaaatt gcaggagtgg atatcgctga tcgtcttcga tccctttgtc gagctcttca 2641 tcacgctgtg cattgtggtc aacacgatgt tcatggccat ggaccatcac gacatgaaca 2701 aggagatgga acgcatcctt aagtgcggaa attatttctt cacggcaaca ttcgccattg 2761 aggcaaccat gaaactgtgc gccatgagcc ccaaatacta tttccaggag ggctggaaca 2821 tctttgactt catcattgtg gcactctcat tgctggagct gggcctcgag ggcgttcagg 2881 gcctctccgt cttgcgttcg tttcgtttgc tgcgtgtatt caaattggcc aagtcctggc 2941 caacacttaa tttactcatt tcgattatgg gacgcaccat gggcgctttg ggtaatctga 3001 catttgtact ttgcattatc atcttcatct ttgcggtgat gggaatgcaa ctgttcggaa 3061 agaattatca tgataacaag gatcgcttcc cggacggtga cctgccccgc tggaacttca 3121 ccgacttcat gcacagcttc atgatcgtgt ttcgggtgct atgcggcgag tggatcgagt 3181 ccatgtggga ctgtatgcac gtgggcgatg tatcgtgcat tccattcttc ttggccaccg 3241 ttgtcatcgg caatttagtg gttcttaacc ttttcttagc cctgcttttg tcaaattttg 3301 gttcatctag cttatcagcg ccgacagccg ataacgatac caataaaata gccgaggcct 3361 tcaatcgaat tgggcgattt aaaagttggg ttaagcgtaa tattgctgat tgtttcaagt 3421 taatacgtaa caaattgaca aatcaaataa gtgatcaacc atcaggtgag aggaccaacc 3481 agatcagttg gatttggagc gaagagcacg gcgacaacga gctggagctg ggccacgacg 3541 agatactcgc cgacgggctc atcaagaagg gcatcaagga ggcgacacag ctggaggtgg 3601 ccatcggtga tggcatggag ttcacgatac acggcgacat gaagaacaac aagccgaaga 3661 aatccaaata tctaaataac gcaacgatga ttggcaactc aattaaccac caagacaata 3721 gactggaaca cgagctaaac catagaggtt tgtccttaca ggacgacgac actgccagca 3781 ttaactcata tggtagccat aagaatcgac cattcaagga tgagagccac aagggcagcg 3841 ccgagacgat ggagggcgag gagaagcggg acgccagcaa ggaggattta ggtatcgatg 3901 aggagctcga cgaggagggc gaattggagg agggcccgct cgacggcgat atcatcatac 3961 atgccaacga tgaggatata ctcgatgaat atccagctga ttgctgcccc gattcgtact 4021 ataagaaatt tccgatctta gccggtgatg atgactcgcc gttctggcaa ggatggggca 4081 atttacgact gaaaactttt caattaattg aaaataaata ttttgaaaca gctgttatca 4141 ctatgatttt aatgagtagc ttagctttgg cattagaaga tgtacatctg ccacaaagac 4201 ccatactgca ggatatttta tactatatgg acagaatatt tacggttata ttcttcttgg 4261 aaatgttaat caagtggctg gcgctcggct tcaaagtgta cttcacgaac gcgtggtgct 4321 ggctcgattt cgtcattgtc atggtatcgc ttatcaactt cgttgcttca cttgttggag 4381 ctggtggtat tcaagccttc aagactatgc gaacgttaag agcactgaga ccactacgtg 4441 ccatgtcccg tatgcagggc atgagggtcg tcgttaatgc gctggtacaa gctataccgt 4501 ccatcttcaa tgtgctattg gtgtgtctaa tattttggct aatttttgcc ataatgggtg 4561 tacagctttt tgctggaaaa tattttaagt gcgaggacat gaatggcacg aagctcagcc 4621 acgagatcat accaaatcgc aatgcctgcg aaagcgagaa ctacacgtgg gtgaattcag 4681 caatgaattt cgatcatgta ggtaacgcgt atctgtgcct tttccaagtg gccaccttca 4741 aaggctggat acaaatcatg aacgatgcta tcgattcacg agaggtggac aagcagccaa 4801 ttcgtgaaac gaacatctac atgtatttat atttcgtatt cttcatcata tttggatcat 4861 ttttcacact caatctgttc attggtgtta tcattgataa ttttaatgag caaaagaaaa 4921 aagcaggtgg atcattagaa atgttcatga cagaagatca gaaaaagtac tataatgcta 4981 tgaaaaagat gggctctaaa aaaccattaa aagccattcc aagaccaagg tggcgtccac 5041 aagcaatagt ctttgaaata gtaaccgata agaaattcga tatagtcata atgttattca 5101 ttggtctgaa catgttcacc atgacactcg atcgttacga tgcgtcggac acgtacaacg 5161 cggtccttga ctatctcaat gcgatattcg tagttatttt cagttccgaa tgtctattaa 5221 aaatattcgc tttacgatat cactatttta ttgagccatg gaatttattt gatgtagtag 5281 ttgtcatttt atccatctta ggtctcgtac ttagcgatat tatcgagaaa tacttcgtat 5341 cgccgacact gctccgagtg gtgcgcgtgg ccaaagtggg tcgcgtactg cgtctggtga 5401 agggcgccaa gggtatacga acgctgctgt tcgccctggc catgtcgctg ccggcgctgt 5461 tcaacatctg cctgctgctg ttcctggtca tgttcatctt cgcgatattc ggcatgtcgt 5521 tcttcatgca tgtgaaggag aagagcggca tcaacgacgt ctacaacttc aagacgttcg 5581 gacagagcat gatcctgctc tttcagatgt ctacctcagc cggttgggat ggtgtactcg 5641 acgccattat caatgaggaa gcatgcgatc cacccgacaa cgacaaaggc tatccgggca 5701 attgtggttc agcgaccgtt ggaataacgt ttctcctctc atacctagtt ataagctttt 5761 tgatagttat taatatgtac attgctgtca ttctcgagaa ctatagtcag gccaccgagg 5821 atgtgcagga gggtctcacc gacgacgatt acgatatgta ctatgagatc tggcaacagt 5881 tcgatccgga gggcacccag tacatacgat acgaccagct gtccgagttc ctcgacgtgc 5941 tggagccccc gctccagatt cacaagccca acaagtacaa aatcatatcg atggacatac 6001 ccatctgtcg cggtgacctc atgtactgtg tggacatact ggacgcactg accaaagact 6061 ttttcgcgcg caaaggcaat cccattgagg agacgggcga gattggtgag attgccgcca 6121 ggccggacac cgagggctac gagcccgtct cctccaccct ctggcgacag cgggaggagt 6181 actgtgcccg cctcattcaa catgcctggc gcaagcataa aacgcgcgcc gagggcggtg 6241 gtgcaccgtc cgacgcggaa ggcgacggcc ccgaagatgg tgatgcgggt ggcggtggcg 6301 gggcggcgct gatgctgggt gttctggatg ttccagatgc tgctggcgat gcagcaacca 6361 ctggctccca tgacggggca acggcactcg atcccgagac cgatccatcg ggagtaccgg 6421 cggcagcggc ggtggcccca cagccagccg gtgacggcgg cgagggaccg gatggaggag 6481 caacagccga tccgcacgag agcaatgtaa atagtccgac gatggacggc gcgacggcgg 6541 gcagcccggg cgcagggagc gctggcagca ctggccgaca gacggccgtt ctcgtggaga 6601 gcgatgggtt tgtgaccaag aacgggcaca aggttgtaat acactcgcgt tcgccgagca 6661 taacgtcgcg cacggcggat gtctgagcca ggcctcgccc ccccctccaa gatgcacgcg 6721 agtattaggt gcaggtgcag atgcagtgca gtggtggtgc cacaacaaca acaacaacaa 6781 cagcaggtgc cactggtagc tgcaattgca actgcaacag cagcaacagg aagaa