PREDICTED: Drosophila obscura sodium channel protein para
LOCUS XM_041591998 6859 bp mRNA linear INV 14-MAY-2021
(LOC111070739), transcript variant X10, mRNA.
ACCESSION XM_041591998
VERSION XM_041591998.1
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..6859
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..6859
/gene="LOC111070739"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 55 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 7 samples with support for all annotated
introns"
/db_xref="GeneID:111070739"
CDS 237..6710
/gene="LOC111070739"
/codon_start=1
/product="sodium channel protein para isoform X10"
/protein_id="XP_041447932.1"
/db_xref="GeneID:111070739"
/translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK
RAEGEPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLE
DIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIIT
TILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDF
VVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIIL
TMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDG
ISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDL
YQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIR
EAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEK
GNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNIR
RGSRSSHKYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGA
IIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQ
SVGATNGGTTCLDPNHKVEHRDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDV
MVLNDIIEQAAGRHSRASDRGVSVYYFPTEDDDEDGPTLKDKALEALMKGIEVFCVWD
CCWVWLKLQEWISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFF
TATFAIEATMKLCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLR
VFKLAKSWPTLNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRF
PDGDLPRWNFTDFMHSFMIVFRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVV
LNLFLALLLSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKL
TNQISDQPSEHGDNELELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNN
KPKKSKYLNNATMIGNSINHQDNRLEHELNHRGLSLQDDDTASINSYGSHKNRPFKDE
SHKGSAETMEGEEKRDASKEDLGIDEELDEEGELEEGPLDGDIIIHANDEDILDEYPA
DCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAVITMILMSSLALA
LEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVIVMV
SLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNVLL
VCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFD
HVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFT
LNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRPQ
AIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSSECL
LKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGRVL
RLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGINDVY
NFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLL
SYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRY
DQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGNPI
EETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKTRAEGGGAPSDAE
GDGPEDGDAGGGGGAALMLGVLDVPDAAGDAATTGSHDGATALDPETDPSGVPAAAAV
APQPAGDGGEGPDGGATADPHESNVNSPTMDGATAGSPGAGSAGSTGRQTAVLVESDG
FVTKNGHKVVIHSRSPSITSRTADV"
misc_feature 687..1541
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 1896..2453
/gene="LOC111070739"
/note="Cytoplasmic domain of voltage-gated Na+ ion
channel; Region: Na_trans_cytopl; pfam11933"
/db_xref="CDD:463401"
misc_feature 2682..3317
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 3393..4127
/gene="LOC111070739"
/note="Sodium ion transport-associated; Region:
Na_trans_assoc; pfam06512"
/db_xref="CDD:461936"
misc_feature 4137..4952
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 4920..5078
/gene="LOC111070739"
/note="Inactivation gate of the voltage-gated sodium
channel alpha subunits; Region: Na_channel_gate; cd13433"
/db_xref="CDD:240441"
misc_feature 4965..4976
/gene="LOC111070739"
/note="putative hydrophobic latch; other site"
/db_xref="CDD:240441"
misc_feature 5100..5852
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 5883..6026
/gene="LOC111070739"
/note="Voltage-dependent L-type calcium channel,
IQ-associated; Region: GPHH; pfam16905"
/db_xref="CDD:465306"
ORIGIN
1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca
61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg
121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac
181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga
241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg
301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg
361 aaagaaagag agccgaggga gagccgcaat atggtcgcaa gaaaaaacaa aaagaaatcc
421 gatatgatga cgaggacgag gatgaaggtc cacaaccgga tcctacactt gaacagggtg
481 tgccaatacc tgttcgactg cagggcagct tccctccgga attggcctcc actcccctcg
541 aggatatcga tcccttctac agcaatatac tgacattcgt agttgtaagc aaaggaaaag
601 atatttttcg cttttctgca tcaaaagcaa tgtggctgct cgatccattc aatccgatac
661 gtcgtgtggc catttacatt ttagtgcatc cactattttc gttattcatc attaccacaa
721 ttctcgtcaa ctgcatcctg atgataatgc cgacaacgcc cacagttgag tccactgagg
781 tgatattcac cggaatctac acatttgaat cagctgttaa agtgatggca cgaggtttca
841 ttttatgccc gtttacgtat cttagagatg catggaattg gctggacttc gtagtaatag
901 ctttagctta tgtgaccatg ggtatagatt taggtaatct tgcagccttg cgaacgttta
961 gggtgctgcg agcgcttaaa accgtagcca ttgtgccagg cttgaagacc attgtcggtg
1021 cggtcatcga atctgtaaag aatctgcgcg atgtgataat tttgacaatg ttctccctgt
1081 cggtgttcgc gctgatgggg ctgcaaatct acatgggcgt gctaacgcag aagtgcatca
1141 agaagttccc gctggacggc tcctggggca acctgaccga cgagaactgg gcctatcaca
1201 atagcaacaa ctctaattgg tattcggaag acgacggtat atcctttccg ttgtgcggta
1261 atatctctgg agcggggcaa tgtgaagacg attacgtgtg tctgcagggg ttcgggccga
1321 acccgaacta tggctacacc agtttcgatt cgttcggttg ggcgtttctg tccgccttcc
1381 ggctgatgac gcaggacttc tgggaggatc tgtatcagct ggtgttgcgt gccgcaggac
1441 cctggcacat gctgttcttt atagtcatca tcttcctagg ttcattctat cttgtgaatt
1501 tgattttggc cattgttgcc atgtcgtatg acgaattgca aaagaaggcc gaagaagaag
1561 aggctgccga agaggaggcg atacgtgaag ccgaggaagc tgccgccgcc aaagcagcca
1621 agctggagga gcgcgccaat gcgcaggccc aggccgccgc cgatgcagct gccgccgaag
1681 aggcggctct tcatccggag atggccaaga gtccgacgta ttcgtgcatc agctatgagc
1741 tatttgtggg cggcgagaaa ggcaacgatg acaacaacaa ggagaagatg tccatacgca
1801 gcgttgaggt ggagtcggag tcggtgagcg ttatacaaag acaaccagca cctaccacag
1861 cacaccaagc taccaaagtt cgtaaagtga gcacgacatc cttatcctta cctggttcac
1921 cgtttaacat acgcagggga tcacgtagtt ctcacaagta cacgatccgg aatggacgtg
1981 gacgctttgg tatacccggc agcgatcgca agccgttggt attgtcaaca tatcaggatg
2041 ctcagcagca cttgccctat gccgatgatt cgaacgctgt tacgcccatg tccgaggaga
2101 acggtgccat tatagtgccc gtttattatg gaaatctagg ctccaggcat tcatcgtata
2161 cttcgcatca gtccagaata tcgtatacct cacatggcga tctattgggc ggcatggccg
2221 tcatgggcgt cagcacaatg accaaggaga gcaaattgcg aaatcgcaac tcacgcaatc
2281 aatcagtggg cgccaccaat ggcggcacca cctgcctgga ccccaatcac aaggtcgagc
2341 atcgcgactt cgaaatcggt ctggagtgca cggacgaagc tggcaagatt aaacatcatg
2401 acaatccttt tatcgagccc gtccagacac aaacggtagt cgacatgaaa gatgtgatgg
2461 tactgaatga cattatcgaa caggccgctg gtcggcacag tcgggctagt gatcgcggtg
2521 tctccgttta ctatttccca acagaggacg atgatgagga tgggccgaca ttaaaagaca
2581 aggccctcga agcgctaatg aaaggcatcg aagtgttttg tgtgtgggac tgttgctggg
2641 tttggttgaa attgcaggag tggatatcgc tgatcgtctt cgatcccttt gtcgagctct
2701 tcatcacgct gtgcattgtg gtcaacacga tgttcatggc catggaccat cacgacatga
2761 acaaggagat ggaacgcatc cttaagtgcg gaaattattt cttcacggca acattcgcca
2821 ttgaggcaac catgaaactg tgcgccatga gccccaaata ctatttccag gagggctgga
2881 acatctttga cttcatcatt gtggcactct cattgctgga gctgggcctc gagggcgttc
2941 agggcctctc cgtcttgcgt tcgtttcgtt tgctgcgtgt attcaaattg gccaagtcct
3001 ggccaacact taatttactc atttcgatta tgggacgcac catgggcgct ttgggtaatc
3061 tgacatttgt actttgcatt atcatcttca tctttgcggt gatgggaatg caactgttcg
3121 gaaagaatta tcatgataac aaggatcgct tcccggacgg tgacctgccc cgctggaact
3181 tcaccgactt catgcacagc ttcatgatcg tgtttcgggt gctatgcggc gagtggatcg
3241 agtccatgtg ggactgtatg cacgtgggcg atgtatcgtg cattccattc ttcttggcca
3301 ccgttgtcat cggcaattta gtggttctta accttttctt agccctgctt ttgtcaaatt
3361 ttggttcatc tagcttatca gcgccgacag ccgataacga taccaataaa atagccgagg
3421 ccttcaatcg aattgggcga tttaaaagtt gggttaagcg taatattgct gattgtttca
3481 agttaatacg taacaaattg acaaatcaaa taagtgatca accatcagag cacggcgaca
3541 acgagctgga gctgggccac gacgagatac tcgccgacgg gctcatcaag aagggcatca
3601 aggaggcgac acagctggag gtggccatcg gtgatggcat ggagttcacg atacacggcg
3661 acatgaagaa caacaagccg aagaaatcca aatatctaaa taacgcaacg atgattggca
3721 actcaattaa ccaccaagac aatagactgg aacacgagct aaaccataga ggtttgtcct
3781 tacaggacga cgacactgcc agcattaact catatggtag ccataagaat cgaccattca
3841 aggatgagag ccacaagggc agcgccgaga cgatggaggg cgaggagaag cgggacgcca
3901 gcaaggagga tttaggtatc gatgaggagc tcgacgagga gggcgaattg gaggagggcc
3961 cgctcgacgg cgatatcatc atacatgcca acgatgagga tatactcgat gaatatccag
4021 ctgattgctg ccccgattcg tactataaga aatttccgat cttagccggt gatgatgact
4081 cgccgttctg gcaaggatgg ggcaatttac gactgaaaac ttttcaatta attgaaaata
4141 aatattttga aacagctgtt atcactatga ttttaatgag tagcttagct ttggcattag
4201 aagatgtaca tctgccacaa agacccatac tgcaggatat tttatactat atggacagaa
4261 tatttacggt tatattcttc ttggaaatgt taatcaagtg gctggcgctc ggcttcaaag
4321 tgtacttcac gaacgcgtgg tgctggctcg atttcgtcat tgtcatggta tcgcttatca
4381 acttcgttgc ttcacttgtt ggagctggtg gtattcaagc cttcaagact atgcgaacgt
4441 taagagcact gagaccacta cgtgccatgt cccgtatgca gggcatgagg gtcgtcgtta
4501 atgcgctggt acaagctata ccgtccatct tcaatgtgct attggtgtgt ctaatatttt
4561 ggctaatttt tgccataatg ggtgtacagc tttttgctgg aaaatatttt aagtgcgagg
4621 acatgaatgg cacgaagctc agccacgaga tcataccaaa tcgcaatgcc tgcgaaagcg
4681 agaactacac gtgggtgaat tcagcaatga atttcgatca tgtaggtaac gcgtatctgt
4741 gccttttcca agtggccacc ttcaaaggct ggatacaaat catgaacgat gctatcgatt
4801 cacgagaggt ggacaagcag ccaattcgtg aaacgaacat ctacatgtat ttatatttcg
4861 tattcttcat catatttgga tcatttttca cactcaatct gttcattggt gttatcattg
4921 ataattttaa tgagcaaaag aaaaaagcag gtggatcatt agaaatgttc atgacagaag
4981 atcagaaaaa gtactataat gctatgaaaa agatgggctc taaaaaacca ttaaaagcca
5041 ttccaagacc aaggtggcgt ccacaagcaa tagtctttga aatagtaacc gataagaaat
5101 tcgatatagt cataatgtta ttcattggtc tgaacatgtt caccatgaca ctcgatcgtt
5161 acgatgcgtc ggacacgtac aacgcggtcc ttgactatct caatgcgata ttcgtagtta
5221 ttttcagttc cgaatgtcta ttaaaaatat tcgctttacg atatcactat tttattgagc
5281 catggaattt atttgatgta gtagttgtca ttttatccat cttaggtctc gtacttagcg
5341 atattatcga gaaatacttc gtatcgccga cactgctccg agtggtgcgc gtggccaaag
5401 tgggtcgcgt actgcgtctg gtgaagggcg ccaagggtat acgaacgctg ctgttcgccc
5461 tggccatgtc gctgccggcg ctgttcaaca tctgcctgct gctgttcctg gtcatgttca
5521 tcttcgcgat attcggcatg tcgttcttca tgcatgtgaa ggagaagagc ggcatcaacg
5581 acgtctacaa cttcaagacg ttcggacaga gcatgatcct gctctttcag atgtctacct
5641 cagccggttg ggatggtgta ctcgacgcca ttatcaatga ggaagcatgc gatccacccg
5701 acaacgacaa aggctatccg ggcaattgtg gttcagcgac cgttggaata acgtttctcc
5761 tctcatacct agttataagc tttttgatag ttattaatat gtacattgct gtcattctcg
5821 agaactatag tcaggccacc gaggatgtgc aggagggtct caccgacgac gattacgata
5881 tgtactatga gatctggcaa cagttcgatc cggagggcac ccagtacata cgatacgacc
5941 agctgtccga gttcctcgac gtgctggagc ccccgctcca gattcacaag cccaacaagt
6001 acaaaatcat atcgatggac atacccatct gtcgcggtga cctcatgtac tgtgtggaca
6061 tactggacgc actgaccaaa gactttttcg cgcgcaaagg caatcccatt gaggagacgg
6121 gcgagattgg tgagattgcc gccaggccgg acaccgaggg ctacgagccc gtctcctcca
6181 ccctctggcg acagcgggag gagtactgtg cccgcctcat tcaacatgcc tggcgcaagc
6241 ataaaacgcg cgccgagggc ggtggtgcac cgtccgacgc ggaaggcgac ggccccgaag
6301 atggtgatgc gggtggcggt ggcggggcgg cgctgatgct gggtgttctg gatgttccag
6361 atgctgctgg cgatgcagca accactggct cccatgacgg ggcaacggca ctcgatcccg
6421 agaccgatcc atcgggagta ccggcggcag cggcggtggc cccacagcca gccggtgacg
6481 gcggcgaggg accggatgga ggagcaacag ccgatccgca cgagagcaat gtaaatagtc
6541 cgacgatgga cggcgcgacg gcgggcagcc cgggcgcagg gagcgctggc agcactggcc
6601 gacagacggc cgttctcgtg gagagcgatg ggtttgtgac caagaacggg cacaaggttg
6661 taatacactc gcgttcgccg agcataacgt cgcgcacggc ggatgtctga gccaggcctc
6721 gcccccccct ccaagatgca cgcgagtatt aggtgcaggt gcagatgcag tgcagtggtg
6781 gtgccacaac aacaacaaca acaacagcag gtgccactgg tagctgcaat tgcaactgca
6841 acagcagcaa caggaagaa