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LOCUS XM_041591998 6859 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X10, mRNA. ACCESSION XM_041591998 VERSION XM_041591998.1 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6859 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6859 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 55 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6710 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X10" /protein_id="XP_041447932.1" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLE DIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIIT TILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDF VVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIIL TMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDG ISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDL YQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIR EAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEK GNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNIR RGSRSSHKYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGA IIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQ SVGATNGGTTCLDPNHKVEHRDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDV MVLNDIIEQAAGRHSRASDRGVSVYYFPTEDDDEDGPTLKDKALEALMKGIEVFCVWD CCWVWLKLQEWISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFF TATFAIEATMKLCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLR VFKLAKSWPTLNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRF PDGDLPRWNFTDFMHSFMIVFRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVV LNLFLALLLSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKL TNQISDQPSEHGDNELELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNN KPKKSKYLNNATMIGNSINHQDNRLEHELNHRGLSLQDDDTASINSYGSHKNRPFKDE SHKGSAETMEGEEKRDASKEDLGIDEELDEEGELEEGPLDGDIIIHANDEDILDEYPA DCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAVITMILMSSLALA LEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVIVMV SLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNVLL VCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFD HVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFT LNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRPQ AIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSSECL LKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGRVL RLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGINDVY NFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLL SYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRY DQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGNPI EETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKTRAEGGGAPSDAE GDGPEDGDAGGGGGAALMLGVLDVPDAAGDAATTGSHDGATALDPETDPSGVPAAAAV APQPAGDGGEGPDGGATADPHESNVNSPTMDGATAGSPGAGSAGSTGRQTAVLVESDG FVTKNGHKVVIHSRSPSITSRTADV" misc_feature 687..1541 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1896..2453 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2682..3317 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3393..4127 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4137..4952 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4920..5078 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 4965..4976 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 5100..5852 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5883..6026 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gagccgcaat atggtcgcaa gaaaaaacaa aaagaaatcc 421 gatatgatga cgaggacgag gatgaaggtc cacaaccgga tcctacactt gaacagggtg 481 tgccaatacc tgttcgactg cagggcagct tccctccgga attggcctcc actcccctcg 541 aggatatcga tcccttctac agcaatatac tgacattcgt agttgtaagc aaaggaaaag 601 atatttttcg cttttctgca tcaaaagcaa tgtggctgct cgatccattc aatccgatac 661 gtcgtgtggc catttacatt ttagtgcatc cactattttc gttattcatc attaccacaa 721 ttctcgtcaa ctgcatcctg atgataatgc cgacaacgcc cacagttgag tccactgagg 781 tgatattcac cggaatctac acatttgaat cagctgttaa agtgatggca cgaggtttca 841 ttttatgccc gtttacgtat cttagagatg catggaattg gctggacttc gtagtaatag 901 ctttagctta tgtgaccatg ggtatagatt taggtaatct tgcagccttg cgaacgttta 961 gggtgctgcg agcgcttaaa accgtagcca ttgtgccagg cttgaagacc attgtcggtg 1021 cggtcatcga atctgtaaag aatctgcgcg atgtgataat tttgacaatg ttctccctgt 1081 cggtgttcgc gctgatgggg ctgcaaatct acatgggcgt gctaacgcag aagtgcatca 1141 agaagttccc gctggacggc tcctggggca acctgaccga cgagaactgg gcctatcaca 1201 atagcaacaa ctctaattgg tattcggaag acgacggtat atcctttccg ttgtgcggta 1261 atatctctgg agcggggcaa tgtgaagacg attacgtgtg tctgcagggg ttcgggccga 1321 acccgaacta tggctacacc agtttcgatt cgttcggttg ggcgtttctg tccgccttcc 1381 ggctgatgac gcaggacttc tgggaggatc tgtatcagct ggtgttgcgt gccgcaggac 1441 cctggcacat gctgttcttt atagtcatca tcttcctagg ttcattctat cttgtgaatt 1501 tgattttggc cattgttgcc atgtcgtatg acgaattgca aaagaaggcc gaagaagaag 1561 aggctgccga agaggaggcg atacgtgaag ccgaggaagc tgccgccgcc aaagcagcca 1621 agctggagga gcgcgccaat gcgcaggccc aggccgccgc cgatgcagct gccgccgaag 1681 aggcggctct tcatccggag atggccaaga gtccgacgta ttcgtgcatc agctatgagc 1741 tatttgtggg cggcgagaaa ggcaacgatg acaacaacaa ggagaagatg tccatacgca 1801 gcgttgaggt ggagtcggag tcggtgagcg ttatacaaag acaaccagca cctaccacag 1861 cacaccaagc taccaaagtt cgtaaagtga gcacgacatc cttatcctta cctggttcac 1921 cgtttaacat acgcagggga tcacgtagtt ctcacaagta cacgatccgg aatggacgtg 1981 gacgctttgg tatacccggc agcgatcgca agccgttggt attgtcaaca tatcaggatg 2041 ctcagcagca cttgccctat gccgatgatt cgaacgctgt tacgcccatg tccgaggaga 2101 acggtgccat tatagtgccc gtttattatg gaaatctagg ctccaggcat tcatcgtata 2161 cttcgcatca gtccagaata tcgtatacct cacatggcga tctattgggc ggcatggccg 2221 tcatgggcgt cagcacaatg accaaggaga gcaaattgcg aaatcgcaac tcacgcaatc 2281 aatcagtggg cgccaccaat ggcggcacca cctgcctgga ccccaatcac aaggtcgagc 2341 atcgcgactt cgaaatcggt ctggagtgca cggacgaagc tggcaagatt aaacatcatg 2401 acaatccttt tatcgagccc gtccagacac aaacggtagt cgacatgaaa gatgtgatgg 2461 tactgaatga cattatcgaa caggccgctg gtcggcacag tcgggctagt gatcgcggtg 2521 tctccgttta ctatttccca acagaggacg atgatgagga tgggccgaca ttaaaagaca 2581 aggccctcga agcgctaatg aaaggcatcg aagtgttttg tgtgtgggac tgttgctggg 2641 tttggttgaa attgcaggag tggatatcgc tgatcgtctt cgatcccttt gtcgagctct 2701 tcatcacgct gtgcattgtg gtcaacacga tgttcatggc catggaccat cacgacatga 2761 acaaggagat ggaacgcatc cttaagtgcg gaaattattt cttcacggca acattcgcca 2821 ttgaggcaac catgaaactg tgcgccatga gccccaaata ctatttccag gagggctgga 2881 acatctttga cttcatcatt gtggcactct cattgctgga gctgggcctc gagggcgttc 2941 agggcctctc cgtcttgcgt tcgtttcgtt tgctgcgtgt attcaaattg gccaagtcct 3001 ggccaacact taatttactc atttcgatta tgggacgcac catgggcgct ttgggtaatc 3061 tgacatttgt actttgcatt atcatcttca tctttgcggt gatgggaatg caactgttcg 3121 gaaagaatta tcatgataac aaggatcgct tcccggacgg tgacctgccc cgctggaact 3181 tcaccgactt catgcacagc ttcatgatcg tgtttcgggt gctatgcggc gagtggatcg 3241 agtccatgtg ggactgtatg cacgtgggcg atgtatcgtg cattccattc ttcttggcca 3301 ccgttgtcat cggcaattta gtggttctta accttttctt agccctgctt ttgtcaaatt 3361 ttggttcatc tagcttatca gcgccgacag ccgataacga taccaataaa atagccgagg 3421 ccttcaatcg aattgggcga tttaaaagtt gggttaagcg taatattgct gattgtttca 3481 agttaatacg taacaaattg acaaatcaaa taagtgatca accatcagag cacggcgaca 3541 acgagctgga gctgggccac gacgagatac tcgccgacgg gctcatcaag aagggcatca 3601 aggaggcgac acagctggag gtggccatcg gtgatggcat ggagttcacg atacacggcg 3661 acatgaagaa caacaagccg aagaaatcca aatatctaaa taacgcaacg atgattggca 3721 actcaattaa ccaccaagac aatagactgg aacacgagct aaaccataga ggtttgtcct 3781 tacaggacga cgacactgcc agcattaact catatggtag ccataagaat cgaccattca 3841 aggatgagag ccacaagggc agcgccgaga cgatggaggg cgaggagaag cgggacgcca 3901 gcaaggagga tttaggtatc gatgaggagc tcgacgagga gggcgaattg gaggagggcc 3961 cgctcgacgg cgatatcatc atacatgcca acgatgagga tatactcgat gaatatccag 4021 ctgattgctg ccccgattcg tactataaga aatttccgat cttagccggt gatgatgact 4081 cgccgttctg gcaaggatgg ggcaatttac gactgaaaac ttttcaatta attgaaaata 4141 aatattttga aacagctgtt atcactatga ttttaatgag tagcttagct ttggcattag 4201 aagatgtaca tctgccacaa agacccatac tgcaggatat tttatactat atggacagaa 4261 tatttacggt tatattcttc ttggaaatgt taatcaagtg gctggcgctc ggcttcaaag 4321 tgtacttcac gaacgcgtgg tgctggctcg atttcgtcat tgtcatggta tcgcttatca 4381 acttcgttgc ttcacttgtt ggagctggtg gtattcaagc cttcaagact atgcgaacgt 4441 taagagcact gagaccacta cgtgccatgt cccgtatgca gggcatgagg gtcgtcgtta 4501 atgcgctggt acaagctata ccgtccatct tcaatgtgct attggtgtgt ctaatatttt 4561 ggctaatttt tgccataatg ggtgtacagc tttttgctgg aaaatatttt aagtgcgagg 4621 acatgaatgg cacgaagctc agccacgaga tcataccaaa tcgcaatgcc tgcgaaagcg 4681 agaactacac gtgggtgaat tcagcaatga atttcgatca tgtaggtaac gcgtatctgt 4741 gccttttcca agtggccacc ttcaaaggct ggatacaaat catgaacgat gctatcgatt 4801 cacgagaggt ggacaagcag ccaattcgtg aaacgaacat ctacatgtat ttatatttcg 4861 tattcttcat catatttgga tcatttttca cactcaatct gttcattggt gttatcattg 4921 ataattttaa tgagcaaaag aaaaaagcag gtggatcatt agaaatgttc atgacagaag 4981 atcagaaaaa gtactataat gctatgaaaa agatgggctc taaaaaacca ttaaaagcca 5041 ttccaagacc aaggtggcgt ccacaagcaa tagtctttga aatagtaacc gataagaaat 5101 tcgatatagt cataatgtta ttcattggtc tgaacatgtt caccatgaca ctcgatcgtt 5161 acgatgcgtc ggacacgtac aacgcggtcc ttgactatct caatgcgata ttcgtagtta 5221 ttttcagttc cgaatgtcta ttaaaaatat tcgctttacg atatcactat tttattgagc 5281 catggaattt atttgatgta gtagttgtca ttttatccat cttaggtctc gtacttagcg 5341 atattatcga gaaatacttc gtatcgccga cactgctccg agtggtgcgc gtggccaaag 5401 tgggtcgcgt actgcgtctg gtgaagggcg ccaagggtat acgaacgctg ctgttcgccc 5461 tggccatgtc gctgccggcg ctgttcaaca tctgcctgct gctgttcctg gtcatgttca 5521 tcttcgcgat attcggcatg tcgttcttca tgcatgtgaa ggagaagagc ggcatcaacg 5581 acgtctacaa cttcaagacg ttcggacaga gcatgatcct gctctttcag atgtctacct 5641 cagccggttg ggatggtgta ctcgacgcca ttatcaatga ggaagcatgc gatccacccg 5701 acaacgacaa aggctatccg ggcaattgtg gttcagcgac cgttggaata acgtttctcc 5761 tctcatacct agttataagc tttttgatag ttattaatat gtacattgct gtcattctcg 5821 agaactatag tcaggccacc gaggatgtgc aggagggtct caccgacgac gattacgata 5881 tgtactatga gatctggcaa cagttcgatc cggagggcac ccagtacata cgatacgacc 5941 agctgtccga gttcctcgac gtgctggagc ccccgctcca gattcacaag cccaacaagt 6001 acaaaatcat atcgatggac atacccatct gtcgcggtga cctcatgtac tgtgtggaca 6061 tactggacgc actgaccaaa gactttttcg cgcgcaaagg caatcccatt gaggagacgg 6121 gcgagattgg tgagattgcc gccaggccgg acaccgaggg ctacgagccc gtctcctcca 6181 ccctctggcg acagcgggag gagtactgtg cccgcctcat tcaacatgcc tggcgcaagc 6241 ataaaacgcg cgccgagggc ggtggtgcac cgtccgacgc ggaaggcgac ggccccgaag 6301 atggtgatgc gggtggcggt ggcggggcgg cgctgatgct gggtgttctg gatgttccag 6361 atgctgctgg cgatgcagca accactggct cccatgacgg ggcaacggca ctcgatcccg 6421 agaccgatcc atcgggagta ccggcggcag cggcggtggc cccacagcca gccggtgacg 6481 gcggcgaggg accggatgga ggagcaacag ccgatccgca cgagagcaat gtaaatagtc 6541 cgacgatgga cggcgcgacg gcgggcagcc cgggcgcagg gagcgctggc agcactggcc 6601 gacagacggc cgttctcgtg gagagcgatg ggtttgtgac caagaacggg cacaaggttg 6661 taatacactc gcgttcgccg agcataacgt cgcgcacggc ggatgtctga gccaggcctc 6721 gcccccccct ccaagatgca cgcgagtatt aggtgcaggt gcagatgcag tgcagtggtg 6781 gtgccacaac aacaacaaca acaacagcag gtgccactgg tagctgcaat tgcaactgca 6841 acagcagcaa caggaagaa