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LOCUS XM_041591996 6874 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X5, mRNA. ACCESSION XM_041591996 VERSION XM_041591996.1 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6874 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6874 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 48 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6725 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X5" /protein_id="XP_041447930.1" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLE DIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIIT TILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDF VVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIIL TMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDG ISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDL YQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIR EAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEK GNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNIR RGSRSSHKYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGA IIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQ SVGATNGGTTCLDPNHKVEHRDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDV MVLNDIIEQAAGRHSRASDRGEDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKL QEWISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEA TMKLCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSW PTLNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRW NFTDFMHSFMIVFRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALL LSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQP SGERTNQISWIWSEEHGDNELELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHG DMKNNKPKKSKYLNNATMIGNSINHQDNRLEHELNHRGLSLQDDDTASINSYGSHKNR PFKDESHKGSAETMEGEEKRDASKEDLGIDEELDEEGELEEGPLDGDIIIHANDEDIL DEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAVITMILMS SLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDF VIVMVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSI FNVLLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESENYTWVNS AMNFDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIF GSFFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRP RWRPQAIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIF SSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAK VGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSG INDVYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGNCGSATVG ITFLLSYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGT QYIRYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFAR KGNPIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKTRAEGGGA PSDAEGDGPEDGDAGGGGGAALMLGVLDVPDAAGDAATTGSHDGATALDPETDPSGVP AAAAVAPQPAGDGGEGPDGGATADPHESNVNSPTMDGATAGSPGAGSAGSTGRQTAVL VESDGFVTKNGHKVVIHSRSPSITSRTADV" misc_feature 687..1541 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1896..2453 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2658..3293 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3369..4142 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4152..4967 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4935..5093 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 4980..4991 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 5115..5867 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5898..6041 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gagccgcaat atggtcgcaa gaaaaaacaa aaagaaatcc 421 gatatgatga cgaggacgag gatgaaggtc cacaaccgga tcctacactt gaacagggtg 481 tgccaatacc tgttcgactg cagggcagct tccctccgga attggcctcc actcccctcg 541 aggatatcga tcccttctac agcaatatac tgacattcgt agttgtaagc aaaggaaaag 601 atatttttcg cttttctgca tcaaaagcaa tgtggctgct cgatccattc aatccgatac 661 gtcgtgtggc catttacatt ttagtgcatc cactattttc gttattcatc attaccacaa 721 ttctcgtcaa ctgcatcctg atgataatgc cgacaacgcc cacagttgag tccactgagg 781 tgatattcac cggaatctac acatttgaat cagctgttaa agtgatggca cgaggtttca 841 ttttatgccc gtttacgtat cttagagatg catggaattg gctggacttc gtagtaatag 901 ctttagctta tgtgaccatg ggtatagatt taggtaatct tgcagccttg cgaacgttta 961 gggtgctgcg agcgcttaaa accgtagcca ttgtgccagg cttgaagacc attgtcggtg 1021 cggtcatcga atctgtaaag aatctgcgcg atgtgataat tttgacaatg ttctccctgt 1081 cggtgttcgc gctgatgggg ctgcaaatct acatgggcgt gctaacgcag aagtgcatca 1141 agaagttccc gctggacggc tcctggggca acctgaccga cgagaactgg gcctatcaca 1201 atagcaacaa ctctaattgg tattcggaag acgacggtat atcctttccg ttgtgcggta 1261 atatctctgg agcggggcaa tgtgaagacg attacgtgtg tctgcagggg ttcgggccga 1321 acccgaacta tggctacacc agtttcgatt cgttcggttg ggcgtttctg tccgccttcc 1381 ggctgatgac gcaggacttc tgggaggatc tgtatcagct ggtgttgcgt gccgcaggac 1441 cctggcacat gctgttcttt atagtcatca tcttcctagg ttcattctat cttgtgaatt 1501 tgattttggc cattgttgcc atgtcgtatg acgaattgca aaagaaggcc gaagaagaag 1561 aggctgccga agaggaggcg atacgtgaag ccgaggaagc tgccgccgcc aaagcagcca 1621 agctggagga gcgcgccaat gcgcaggccc aggccgccgc cgatgcagct gccgccgaag 1681 aggcggctct tcatccggag atggccaaga gtccgacgta ttcgtgcatc agctatgagc 1741 tatttgtggg cggcgagaaa ggcaacgatg acaacaacaa ggagaagatg tccatacgca 1801 gcgttgaggt ggagtcggag tcggtgagcg ttatacaaag acaaccagca cctaccacag 1861 cacaccaagc taccaaagtt cgtaaagtga gcacgacatc cttatcctta cctggttcac 1921 cgtttaacat acgcagggga tcacgtagtt ctcacaagta cacgatccgg aatggacgtg 1981 gacgctttgg tatacccggc agcgatcgca agccgttggt attgtcaaca tatcaggatg 2041 ctcagcagca cttgccctat gccgatgatt cgaacgctgt tacgcccatg tccgaggaga 2101 acggtgccat tatagtgccc gtttattatg gaaatctagg ctccaggcat tcatcgtata 2161 cttcgcatca gtccagaata tcgtatacct cacatggcga tctattgggc ggcatggccg 2221 tcatgggcgt cagcacaatg accaaggaga gcaaattgcg aaatcgcaac tcacgcaatc 2281 aatcagtggg cgccaccaat ggcggcacca cctgcctgga ccccaatcac aaggtcgagc 2341 atcgcgactt cgaaatcggt ctggagtgca cggacgaagc tggcaagatt aaacatcatg 2401 acaatccttt tatcgagccc gtccagacac aaacggtagt cgacatgaaa gatgtgatgg 2461 tactgaatga cattatcgaa caggccgctg gtcggcacag tcgggctagt gatcgcggtg 2521 aggacgatga tgaggatggg ccgacattaa aagacaaggc cctcgaagcg ctaatgaaag 2581 gcatcgaagt gttttgtgtg tgggactgtt gctgggtttg gttgaaattg caggagtgga 2641 tatcgctgat cgtcttcgat ccctttgtcg agctcttcat cacgctgtgc attgtggtca 2701 acacgatgtt catggccatg gaccatcacg acatgaacaa ggagatggaa cgcatcctta 2761 agtgcggaaa ttatttcttc acggcaacat tcgccattga ggcaaccatg aaactgtgcg 2821 ccatgagccc caaatactat ttccaggagg gctggaacat ctttgacttc atcattgtgg 2881 cactctcatt gctggagctg ggcctcgagg gcgttcaggg cctctccgtc ttgcgttcgt 2941 ttcgtttgct gcgtgtattc aaattggcca agtcctggcc aacacttaat ttactcattt 3001 cgattatggg acgcaccatg ggcgctttgg gtaatctgac atttgtactt tgcattatca 3061 tcttcatctt tgcggtgatg ggaatgcaac tgttcggaaa gaattatcat gataacaagg 3121 atcgcttccc ggacggtgac ctgccccgct ggaacttcac cgacttcatg cacagcttca 3181 tgatcgtgtt tcgggtgcta tgcggcgagt ggatcgagtc catgtgggac tgtatgcacg 3241 tgggcgatgt atcgtgcatt ccattcttct tggccaccgt tgtcatcggc aatttagtgg 3301 ttcttaacct tttcttagcc ctgcttttgt caaattttgg ttcatctagc ttatcagcgc 3361 cgacagccga taacgatacc aataaaatag ccgaggcctt caatcgaatt gggcgattta 3421 aaagttgggt taagcgtaat attgctgatt gtttcaagtt aatacgtaac aaattgacaa 3481 atcaaataag tgatcaacca tcaggtgaga ggaccaacca gatcagttgg atttggagcg 3541 aagagcacgg cgacaacgag ctggagctgg gccacgacga gatactcgcc gacgggctca 3601 tcaagaaggg catcaaggag gcgacacagc tggaggtggc catcggtgat ggcatggagt 3661 tcacgataca cggcgacatg aagaacaaca agccgaagaa atccaaatat ctaaataacg 3721 caacgatgat tggcaactca attaaccacc aagacaatag actggaacac gagctaaacc 3781 atagaggttt gtccttacag gacgacgaca ctgccagcat taactcatat ggtagccata 3841 agaatcgacc attcaaggat gagagccaca agggcagcgc cgagacgatg gagggcgagg 3901 agaagcggga cgccagcaag gaggatttag gtatcgatga ggagctcgac gaggagggcg 3961 aattggagga gggcccgctc gacggcgata tcatcataca tgccaacgat gaggatatac 4021 tcgatgaata tccagctgat tgctgccccg attcgtacta taagaaattt ccgatcttag 4081 ccggtgatga tgactcgccg ttctggcaag gatggggcaa tttacgactg aaaacttttc 4141 aattaattga aaataaatat tttgaaacag ctgttatcac tatgatttta atgagtagct 4201 tagctttggc attagaagat gtacatctgc cacaaagacc catactgcag gatattttat 4261 actatatgga cagaatattt acggttatat tcttcttgga aatgttaatc aagtggctgg 4321 cgctcggctt caaagtgtac ttcacgaacg cgtggtgctg gctcgatttc gtcattgtca 4381 tggtatcgct tatcaacttc gttgcttcac ttgttggagc tggtggtatt caagccttca 4441 agactatgcg aacgttaaga gcactgagac cactacgtgc catgtcccgt atgcagggca 4501 tgagggtcgt cgttaatgcg ctggtacaag ctataccgtc catcttcaat gtgctattgg 4561 tgtgtctaat attttggcta atttttgcca taatgggtgt acagcttttt gctggaaaat 4621 attttaagtg cgaggacatg aatggcacga agctcagcca cgagatcata ccaaatcgca 4681 atgcctgcga aagcgagaac tacacgtggg tgaattcagc aatgaatttc gatcatgtag 4741 gtaacgcgta tctgtgcctt ttccaagtgg ccaccttcaa aggctggata caaatcatga 4801 acgatgctat cgattcacga gaggtggaca agcagccaat tcgtgaaacg aacatctaca 4861 tgtatttata tttcgtattc ttcatcatat ttggatcatt tttcacactc aatctgttca 4921 ttggtgttat cattgataat tttaatgagc aaaagaaaaa agcaggtgga tcattagaaa 4981 tgttcatgac agaagatcag aaaaagtact ataatgctat gaaaaagatg ggctctaaaa 5041 aaccattaaa agccattcca agaccaaggt ggcgtccaca agcaatagtc tttgaaatag 5101 taaccgataa gaaattcgat atagtcataa tgttattcat tggtctgaac atgttcacca 5161 tgacactcga tcgttacgat gcgtcggaca cgtacaacgc ggtccttgac tatctcaatg 5221 cgatattcgt agttattttc agttccgaat gtctattaaa aatattcgct ttacgatatc 5281 actattttat tgagccatgg aatttatttg atgtagtagt tgtcatttta tccatcttag 5341 gtctcgtact tagcgatatt atcgagaaat acttcgtatc gccgacactg ctccgagtgg 5401 tgcgcgtggc caaagtgggt cgcgtactgc gtctggtgaa gggcgccaag ggtatacgaa 5461 cgctgctgtt cgccctggcc atgtcgctgc cggcgctgtt caacatctgc ctgctgctgt 5521 tcctggtcat gttcatcttc gcgatattcg gcatgtcgtt cttcatgcat gtgaaggaga 5581 agagcggcat caacgacgtc tacaacttca agacgttcgg acagagcatg atcctgctct 5641 ttcagatgtc tacctcagcc ggttgggatg gtgtactcga cgccattatc aatgaggaag 5701 catgcgatcc acccgacaac gacaaaggct atccgggcaa ttgtggttca gcgaccgttg 5761 gaataacgtt tctcctctca tacctagtta taagcttttt gatagttatt aatatgtaca 5821 ttgctgtcat tctcgagaac tatagtcagg ccaccgagga tgtgcaggag ggtctcaccg 5881 acgacgatta cgatatgtac tatgagatct ggcaacagtt cgatccggag ggcacccagt 5941 acatacgata cgaccagctg tccgagttcc tcgacgtgct ggagcccccg ctccagattc 6001 acaagcccaa caagtacaaa atcatatcga tggacatacc catctgtcgc ggtgacctca 6061 tgtactgtgt ggacatactg gacgcactga ccaaagactt tttcgcgcgc aaaggcaatc 6121 ccattgagga gacgggcgag attggtgaga ttgccgccag gccggacacc gagggctacg 6181 agcccgtctc ctccaccctc tggcgacagc gggaggagta ctgtgcccgc ctcattcaac 6241 atgcctggcg caagcataaa acgcgcgccg agggcggtgg tgcaccgtcc gacgcggaag 6301 gcgacggccc cgaagatggt gatgcgggtg gcggtggcgg ggcggcgctg atgctgggtg 6361 ttctggatgt tccagatgct gctggcgatg cagcaaccac tggctcccat gacggggcaa 6421 cggcactcga tcccgagacc gatccatcgg gagtaccggc ggcagcggcg gtggccccac 6481 agccagccgg tgacggcggc gagggaccgg atggaggagc aacagccgat ccgcacgaga 6541 gcaatgtaaa tagtccgacg atggacggcg cgacggcggg cagcccgggc gcagggagcg 6601 ctggcagcac tggccgacag acggccgttc tcgtggagag cgatgggttt gtgaccaaga 6661 acgggcacaa ggttgtaata cactcgcgtt cgccgagcat aacgtcgcgc acggcggatg 6721 tctgagccag gcctcgcccc cccctccaag atgcacgcga gtattaggtg caggtgcaga 6781 tgcagtgcag tggtggtgcc acaacaacaa caacaacaac agcaggtgcc actggtagct 6841 gcaattgcaa ctgcaacagc agcaacagga agaa