PREDICTED: Drosophila obscura sodium channel protein para
LOCUS XM_041591995 6898 bp mRNA linear INV 14-MAY-2021
(LOC111070739), transcript variant X2, mRNA.
ACCESSION XM_041591995
VERSION XM_041591995.1
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..6898
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..6898
/gene="LOC111070739"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 48 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 7 samples with support for all annotated
introns"
/db_xref="GeneID:111070739"
CDS 237..6749
/gene="LOC111070739"
/codon_start=1
/product="sodium channel protein para isoform X2"
/protein_id="XP_041447929.1"
/db_xref="GeneID:111070739"
/translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK
RAEGEPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLE
DIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIIT
TILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDF
VVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIIL
TMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDG
ISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDL
YQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIR
EAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEK
GNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNIR
RGSRSSHKYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGA
IIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQ
SVGATNGGTTCLDPNHKVEHRDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDV
MVLNDIIEQAAGRHSRASDRGVSVYYFPTEDDDEDGPTLKDKALEALMKGIEVFCVWD
CCWVWLKLQEWISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFF
TATFAIEATMKLCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLR
VFKLAKSWPTLNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRF
PDGDLPRWNFTDFMHSFMIVFRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVV
LNLFLALLLSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKL
TNQISDQPSGERTNQISWIWSEEHGDNELELGHDEILADGLIKKGIKEATQLEVAIGD
GMEFTIHGDMKNNKPKKSKYLNNATMIGNSINHQDNRLEHELNHRGLSLQDDDTASIN
SYGSHKNRPFKDESHKGSAETMEGEEKRDASKEDLGIDEELDEEGELEEGPLDGDIII
HANDEDILDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETA
VITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT
NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNA
LVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACES
ENYTWVNSAMNFDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYL
YFVFFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKK
PLKAIPRPRWRPQAIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYDASDTYNAVLDYL
NAIFVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTL
LRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFF
MHVKEKSGINDVYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPG
NCGSATVGITFLLSYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIW
QQFDPEGTQYIRYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDA
LTKDFFARKGNPIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHK
TRAEGGGAPSDAEGDGPEDGDAGGGGGAALMLGVLDVPDAAGDAATTGSHDGATALDP
ETDPSGVPAAAAVAPQPAGDGGEGPDGGATADPHESNVNSPTMDGATAGSPGAGSAGS
TGRQTAVLVESDGFVTKNGHKVVIHSRSPSITSRTADV"
misc_feature 687..1541
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 1896..2453
/gene="LOC111070739"
/note="Cytoplasmic domain of voltage-gated Na+ ion
channel; Region: Na_trans_cytopl; pfam11933"
/db_xref="CDD:463401"
misc_feature 2682..3317
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 3393..4166
/gene="LOC111070739"
/note="Sodium ion transport-associated; Region:
Na_trans_assoc; pfam06512"
/db_xref="CDD:461936"
misc_feature 4176..4991
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 4959..5117
/gene="LOC111070739"
/note="Inactivation gate of the voltage-gated sodium
channel alpha subunits; Region: Na_channel_gate; cd13433"
/db_xref="CDD:240441"
misc_feature 5004..5015
/gene="LOC111070739"
/note="putative hydrophobic latch; other site"
/db_xref="CDD:240441"
misc_feature 5139..5891
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 5922..6065
/gene="LOC111070739"
/note="Voltage-dependent L-type calcium channel,
IQ-associated; Region: GPHH; pfam16905"
/db_xref="CDD:465306"
ORIGIN
1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca
61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg
121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac
181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga
241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg
301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg
361 aaagaaagag agccgaggga gagccgcaat atggtcgcaa gaaaaaacaa aaagaaatcc
421 gatatgatga cgaggacgag gatgaaggtc cacaaccgga tcctacactt gaacagggtg
481 tgccaatacc tgttcgactg cagggcagct tccctccgga attggcctcc actcccctcg
541 aggatatcga tcccttctac agcaatatac tgacattcgt agttgtaagc aaaggaaaag
601 atatttttcg cttttctgca tcaaaagcaa tgtggctgct cgatccattc aatccgatac
661 gtcgtgtggc catttacatt ttagtgcatc cactattttc gttattcatc attaccacaa
721 ttctcgtcaa ctgcatcctg atgataatgc cgacaacgcc cacagttgag tccactgagg
781 tgatattcac cggaatctac acatttgaat cagctgttaa agtgatggca cgaggtttca
841 ttttatgccc gtttacgtat cttagagatg catggaattg gctggacttc gtagtaatag
901 ctttagctta tgtgaccatg ggtatagatt taggtaatct tgcagccttg cgaacgttta
961 gggtgctgcg agcgcttaaa accgtagcca ttgtgccagg cttgaagacc attgtcggtg
1021 cggtcatcga atctgtaaag aatctgcgcg atgtgataat tttgacaatg ttctccctgt
1081 cggtgttcgc gctgatgggg ctgcaaatct acatgggcgt gctaacgcag aagtgcatca
1141 agaagttccc gctggacggc tcctggggca acctgaccga cgagaactgg gcctatcaca
1201 atagcaacaa ctctaattgg tattcggaag acgacggtat atcctttccg ttgtgcggta
1261 atatctctgg agcggggcaa tgtgaagacg attacgtgtg tctgcagggg ttcgggccga
1321 acccgaacta tggctacacc agtttcgatt cgttcggttg ggcgtttctg tccgccttcc
1381 ggctgatgac gcaggacttc tgggaggatc tgtatcagct ggtgttgcgt gccgcaggac
1441 cctggcacat gctgttcttt atagtcatca tcttcctagg ttcattctat cttgtgaatt
1501 tgattttggc cattgttgcc atgtcgtatg acgaattgca aaagaaggcc gaagaagaag
1561 aggctgccga agaggaggcg atacgtgaag ccgaggaagc tgccgccgcc aaagcagcca
1621 agctggagga gcgcgccaat gcgcaggccc aggccgccgc cgatgcagct gccgccgaag
1681 aggcggctct tcatccggag atggccaaga gtccgacgta ttcgtgcatc agctatgagc
1741 tatttgtggg cggcgagaaa ggcaacgatg acaacaacaa ggagaagatg tccatacgca
1801 gcgttgaggt ggagtcggag tcggtgagcg ttatacaaag acaaccagca cctaccacag
1861 cacaccaagc taccaaagtt cgtaaagtga gcacgacatc cttatcctta cctggttcac
1921 cgtttaacat acgcagggga tcacgtagtt ctcacaagta cacgatccgg aatggacgtg
1981 gacgctttgg tatacccggc agcgatcgca agccgttggt attgtcaaca tatcaggatg
2041 ctcagcagca cttgccctat gccgatgatt cgaacgctgt tacgcccatg tccgaggaga
2101 acggtgccat tatagtgccc gtttattatg gaaatctagg ctccaggcat tcatcgtata
2161 cttcgcatca gtccagaata tcgtatacct cacatggcga tctattgggc ggcatggccg
2221 tcatgggcgt cagcacaatg accaaggaga gcaaattgcg aaatcgcaac tcacgcaatc
2281 aatcagtggg cgccaccaat ggcggcacca cctgcctgga ccccaatcac aaggtcgagc
2341 atcgcgactt cgaaatcggt ctggagtgca cggacgaagc tggcaagatt aaacatcatg
2401 acaatccttt tatcgagccc gtccagacac aaacggtagt cgacatgaaa gatgtgatgg
2461 tactgaatga cattatcgaa caggccgctg gtcggcacag tcgggctagt gatcgcggtg
2521 tctccgttta ctatttccca acagaggacg atgatgagga tgggccgaca ttaaaagaca
2581 aggccctcga agcgctaatg aaaggcatcg aagtgttttg tgtgtgggac tgttgctggg
2641 tttggttgaa attgcaggag tggatatcgc tgatcgtctt cgatcccttt gtcgagctct
2701 tcatcacgct gtgcattgtg gtcaacacga tgttcatggc catggaccat cacgacatga
2761 acaaggagat ggaacgcatc cttaagtgcg gaaattattt cttcacggca acattcgcca
2821 ttgaggcaac catgaaactg tgcgccatga gccccaaata ctatttccag gagggctgga
2881 acatctttga cttcatcatt gtggcactct cattgctgga gctgggcctc gagggcgttc
2941 agggcctctc cgtcttgcgt tcgtttcgtt tgctgcgtgt attcaaattg gccaagtcct
3001 ggccaacact taatttactc atttcgatta tgggacgcac catgggcgct ttgggtaatc
3061 tgacatttgt actttgcatt atcatcttca tctttgcggt gatgggaatg caactgttcg
3121 gaaagaatta tcatgataac aaggatcgct tcccggacgg tgacctgccc cgctggaact
3181 tcaccgactt catgcacagc ttcatgatcg tgtttcgggt gctatgcggc gagtggatcg
3241 agtccatgtg ggactgtatg cacgtgggcg atgtatcgtg cattccattc ttcttggcca
3301 ccgttgtcat cggcaattta gtggttctta accttttctt agccctgctt ttgtcaaatt
3361 ttggttcatc tagcttatca gcgccgacag ccgataacga taccaataaa atagccgagg
3421 ccttcaatcg aattgggcga tttaaaagtt gggttaagcg taatattgct gattgtttca
3481 agttaatacg taacaaattg acaaatcaaa taagtgatca accatcaggt gagaggacca
3541 accagatcag ttggatttgg agcgaagagc acggcgacaa cgagctggag ctgggccacg
3601 acgagatact cgccgacggg ctcatcaaga agggcatcaa ggaggcgaca cagctggagg
3661 tggccatcgg tgatggcatg gagttcacga tacacggcga catgaagaac aacaagccga
3721 agaaatccaa atatctaaat aacgcaacga tgattggcaa ctcaattaac caccaagaca
3781 atagactgga acacgagcta aaccatagag gtttgtcctt acaggacgac gacactgcca
3841 gcattaactc atatggtagc cataagaatc gaccattcaa ggatgagagc cacaagggca
3901 gcgccgagac gatggagggc gaggagaagc gggacgccag caaggaggat ttaggtatcg
3961 atgaggagct cgacgaggag ggcgaattgg aggagggccc gctcgacggc gatatcatca
4021 tacatgccaa cgatgaggat atactcgatg aatatccagc tgattgctgc cccgattcgt
4081 actataagaa atttccgatc ttagccggtg atgatgactc gccgttctgg caaggatggg
4141 gcaatttacg actgaaaact tttcaattaa ttgaaaataa atattttgaa acagctgtta
4201 tcactatgat tttaatgagt agcttagctt tggcattaga agatgtacat ctgccacaaa
4261 gacccatact gcaggatatt ttatactata tggacagaat atttacggtt atattcttct
4321 tggaaatgtt aatcaagtgg ctggcgctcg gcttcaaagt gtacttcacg aacgcgtggt
4381 gctggctcga tttcgtcatt gtcatggtat cgcttatcaa cttcgttgct tcacttgttg
4441 gagctggtgg tattcaagcc ttcaagacta tgcgaacgtt aagagcactg agaccactac
4501 gtgccatgtc ccgtatgcag ggcatgaggg tcgtcgttaa tgcgctggta caagctatac
4561 cgtccatctt caatgtgcta ttggtgtgtc taatattttg gctaattttt gccataatgg
4621 gtgtacagct ttttgctgga aaatatttta agtgcgagga catgaatggc acgaagctca
4681 gccacgagat cataccaaat cgcaatgcct gcgaaagcga gaactacacg tgggtgaatt
4741 cagcaatgaa tttcgatcat gtaggtaacg cgtatctgtg ccttttccaa gtggccacct
4801 tcaaaggctg gatacaaatc atgaacgatg ctatcgattc acgagaggtg gacaagcagc
4861 caattcgtga aacgaacatc tacatgtatt tatatttcgt attcttcatc atatttggat
4921 catttttcac actcaatctg ttcattggtg ttatcattga taattttaat gagcaaaaga
4981 aaaaagcagg tggatcatta gaaatgttca tgacagaaga tcagaaaaag tactataatg
5041 ctatgaaaaa gatgggctct aaaaaaccat taaaagccat tccaagacca aggtggcgtc
5101 cacaagcaat agtctttgaa atagtaaccg ataagaaatt cgatatagtc ataatgttat
5161 tcattggtct gaacatgttc accatgacac tcgatcgtta cgatgcgtcg gacacgtaca
5221 acgcggtcct tgactatctc aatgcgatat tcgtagttat tttcagttcc gaatgtctat
5281 taaaaatatt cgctttacga tatcactatt ttattgagcc atggaattta tttgatgtag
5341 tagttgtcat tttatccatc ttaggtctcg tacttagcga tattatcgag aaatacttcg
5401 tatcgccgac actgctccga gtggtgcgcg tggccaaagt gggtcgcgta ctgcgtctgg
5461 tgaagggcgc caagggtata cgaacgctgc tgttcgccct ggccatgtcg ctgccggcgc
5521 tgttcaacat ctgcctgctg ctgttcctgg tcatgttcat cttcgcgata ttcggcatgt
5581 cgttcttcat gcatgtgaag gagaagagcg gcatcaacga cgtctacaac ttcaagacgt
5641 tcggacagag catgatcctg ctctttcaga tgtctacctc agccggttgg gatggtgtac
5701 tcgacgccat tatcaatgag gaagcatgcg atccacccga caacgacaaa ggctatccgg
5761 gcaattgtgg ttcagcgacc gttggaataa cgtttctcct ctcataccta gttataagct
5821 ttttgatagt tattaatatg tacattgctg tcattctcga gaactatagt caggccaccg
5881 aggatgtgca ggagggtctc accgacgacg attacgatat gtactatgag atctggcaac
5941 agttcgatcc ggagggcacc cagtacatac gatacgacca gctgtccgag ttcctcgacg
6001 tgctggagcc cccgctccag attcacaagc ccaacaagta caaaatcata tcgatggaca
6061 tacccatctg tcgcggtgac ctcatgtact gtgtggacat actggacgca ctgaccaaag
6121 actttttcgc gcgcaaaggc aatcccattg aggagacggg cgagattggt gagattgccg
6181 ccaggccgga caccgagggc tacgagcccg tctcctccac cctctggcga cagcgggagg
6241 agtactgtgc ccgcctcatt caacatgcct ggcgcaagca taaaacgcgc gccgagggcg
6301 gtggtgcacc gtccgacgcg gaaggcgacg gccccgaaga tggtgatgcg ggtggcggtg
6361 gcggggcggc gctgatgctg ggtgttctgg atgttccaga tgctgctggc gatgcagcaa
6421 ccactggctc ccatgacggg gcaacggcac tcgatcccga gaccgatcca tcgggagtac
6481 cggcggcagc ggcggtggcc ccacagccag ccggtgacgg cggcgaggga ccggatggag
6541 gagcaacagc cgatccgcac gagagcaatg taaatagtcc gacgatggac ggcgcgacgg
6601 cgggcagccc gggcgcaggg agcgctggca gcactggccg acagacggcc gttctcgtgg
6661 agagcgatgg gtttgtgacc aagaacgggc acaaggttgt aatacactcg cgttcgccga
6721 gcataacgtc gcgcacggcg gatgtctgag ccaggcctcg cccccccctc caagatgcac
6781 gcgagtatta ggtgcaggtg cagatgcagt gcagtggtgg tgccacaaca acaacaacaa
6841 caacagcagg tgccactggt agctgcaatt gcaactgcaa cagcagcaac aggaagaa