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LOCUS XM_041591995 6898 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X2, mRNA. ACCESSION XM_041591995 VERSION XM_041591995.1 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6898 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6898 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 48 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6749 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X2" /protein_id="XP_041447929.1" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLE DIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIIT TILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDF VVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIIL TMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDG ISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDL YQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIR EAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEK GNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNIR RGSRSSHKYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGA IIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQ SVGATNGGTTCLDPNHKVEHRDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDV MVLNDIIEQAAGRHSRASDRGVSVYYFPTEDDDEDGPTLKDKALEALMKGIEVFCVWD CCWVWLKLQEWISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFF TATFAIEATMKLCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLR VFKLAKSWPTLNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRF PDGDLPRWNFTDFMHSFMIVFRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVV LNLFLALLLSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKL TNQISDQPSGERTNQISWIWSEEHGDNELELGHDEILADGLIKKGIKEATQLEVAIGD GMEFTIHGDMKNNKPKKSKYLNNATMIGNSINHQDNRLEHELNHRGLSLQDDDTASIN SYGSHKNRPFKDESHKGSAETMEGEEKRDASKEDLGIDEELDEEGELEEGPLDGDIII HANDEDILDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETA VITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNA LVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACES ENYTWVNSAMNFDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYL YFVFFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKK PLKAIPRPRWRPQAIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYDASDTYNAVLDYL NAIFVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTL LRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFF MHVKEKSGINDVYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPG NCGSATVGITFLLSYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIW QQFDPEGTQYIRYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDA LTKDFFARKGNPIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHK TRAEGGGAPSDAEGDGPEDGDAGGGGGAALMLGVLDVPDAAGDAATTGSHDGATALDP ETDPSGVPAAAAVAPQPAGDGGEGPDGGATADPHESNVNSPTMDGATAGSPGAGSAGS TGRQTAVLVESDGFVTKNGHKVVIHSRSPSITSRTADV" misc_feature 687..1541 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1896..2453 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2682..3317 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3393..4166 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4176..4991 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4959..5117 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 5004..5015 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 5139..5891 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5922..6065 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gagccgcaat atggtcgcaa gaaaaaacaa aaagaaatcc 421 gatatgatga cgaggacgag gatgaaggtc cacaaccgga tcctacactt gaacagggtg 481 tgccaatacc tgttcgactg cagggcagct tccctccgga attggcctcc actcccctcg 541 aggatatcga tcccttctac agcaatatac tgacattcgt agttgtaagc aaaggaaaag 601 atatttttcg cttttctgca tcaaaagcaa tgtggctgct cgatccattc aatccgatac 661 gtcgtgtggc catttacatt ttagtgcatc cactattttc gttattcatc attaccacaa 721 ttctcgtcaa ctgcatcctg atgataatgc cgacaacgcc cacagttgag tccactgagg 781 tgatattcac cggaatctac acatttgaat cagctgttaa agtgatggca cgaggtttca 841 ttttatgccc gtttacgtat cttagagatg catggaattg gctggacttc gtagtaatag 901 ctttagctta tgtgaccatg ggtatagatt taggtaatct tgcagccttg cgaacgttta 961 gggtgctgcg agcgcttaaa accgtagcca ttgtgccagg cttgaagacc attgtcggtg 1021 cggtcatcga atctgtaaag aatctgcgcg atgtgataat tttgacaatg ttctccctgt 1081 cggtgttcgc gctgatgggg ctgcaaatct acatgggcgt gctaacgcag aagtgcatca 1141 agaagttccc gctggacggc tcctggggca acctgaccga cgagaactgg gcctatcaca 1201 atagcaacaa ctctaattgg tattcggaag acgacggtat atcctttccg ttgtgcggta 1261 atatctctgg agcggggcaa tgtgaagacg attacgtgtg tctgcagggg ttcgggccga 1321 acccgaacta tggctacacc agtttcgatt cgttcggttg ggcgtttctg tccgccttcc 1381 ggctgatgac gcaggacttc tgggaggatc tgtatcagct ggtgttgcgt gccgcaggac 1441 cctggcacat gctgttcttt atagtcatca tcttcctagg ttcattctat cttgtgaatt 1501 tgattttggc cattgttgcc atgtcgtatg acgaattgca aaagaaggcc gaagaagaag 1561 aggctgccga agaggaggcg atacgtgaag ccgaggaagc tgccgccgcc aaagcagcca 1621 agctggagga gcgcgccaat gcgcaggccc aggccgccgc cgatgcagct gccgccgaag 1681 aggcggctct tcatccggag atggccaaga gtccgacgta ttcgtgcatc agctatgagc 1741 tatttgtggg cggcgagaaa ggcaacgatg acaacaacaa ggagaagatg tccatacgca 1801 gcgttgaggt ggagtcggag tcggtgagcg ttatacaaag acaaccagca cctaccacag 1861 cacaccaagc taccaaagtt cgtaaagtga gcacgacatc cttatcctta cctggttcac 1921 cgtttaacat acgcagggga tcacgtagtt ctcacaagta cacgatccgg aatggacgtg 1981 gacgctttgg tatacccggc agcgatcgca agccgttggt attgtcaaca tatcaggatg 2041 ctcagcagca cttgccctat gccgatgatt cgaacgctgt tacgcccatg tccgaggaga 2101 acggtgccat tatagtgccc gtttattatg gaaatctagg ctccaggcat tcatcgtata 2161 cttcgcatca gtccagaata tcgtatacct cacatggcga tctattgggc ggcatggccg 2221 tcatgggcgt cagcacaatg accaaggaga gcaaattgcg aaatcgcaac tcacgcaatc 2281 aatcagtggg cgccaccaat ggcggcacca cctgcctgga ccccaatcac aaggtcgagc 2341 atcgcgactt cgaaatcggt ctggagtgca cggacgaagc tggcaagatt aaacatcatg 2401 acaatccttt tatcgagccc gtccagacac aaacggtagt cgacatgaaa gatgtgatgg 2461 tactgaatga cattatcgaa caggccgctg gtcggcacag tcgggctagt gatcgcggtg 2521 tctccgttta ctatttccca acagaggacg atgatgagga tgggccgaca ttaaaagaca 2581 aggccctcga agcgctaatg aaaggcatcg aagtgttttg tgtgtgggac tgttgctggg 2641 tttggttgaa attgcaggag tggatatcgc tgatcgtctt cgatcccttt gtcgagctct 2701 tcatcacgct gtgcattgtg gtcaacacga tgttcatggc catggaccat cacgacatga 2761 acaaggagat ggaacgcatc cttaagtgcg gaaattattt cttcacggca acattcgcca 2821 ttgaggcaac catgaaactg tgcgccatga gccccaaata ctatttccag gagggctgga 2881 acatctttga cttcatcatt gtggcactct cattgctgga gctgggcctc gagggcgttc 2941 agggcctctc cgtcttgcgt tcgtttcgtt tgctgcgtgt attcaaattg gccaagtcct 3001 ggccaacact taatttactc atttcgatta tgggacgcac catgggcgct ttgggtaatc 3061 tgacatttgt actttgcatt atcatcttca tctttgcggt gatgggaatg caactgttcg 3121 gaaagaatta tcatgataac aaggatcgct tcccggacgg tgacctgccc cgctggaact 3181 tcaccgactt catgcacagc ttcatgatcg tgtttcgggt gctatgcggc gagtggatcg 3241 agtccatgtg ggactgtatg cacgtgggcg atgtatcgtg cattccattc ttcttggcca 3301 ccgttgtcat cggcaattta gtggttctta accttttctt agccctgctt ttgtcaaatt 3361 ttggttcatc tagcttatca gcgccgacag ccgataacga taccaataaa atagccgagg 3421 ccttcaatcg aattgggcga tttaaaagtt gggttaagcg taatattgct gattgtttca 3481 agttaatacg taacaaattg acaaatcaaa taagtgatca accatcaggt gagaggacca 3541 accagatcag ttggatttgg agcgaagagc acggcgacaa cgagctggag ctgggccacg 3601 acgagatact cgccgacggg ctcatcaaga agggcatcaa ggaggcgaca cagctggagg 3661 tggccatcgg tgatggcatg gagttcacga tacacggcga catgaagaac aacaagccga 3721 agaaatccaa atatctaaat aacgcaacga tgattggcaa ctcaattaac caccaagaca 3781 atagactgga acacgagcta aaccatagag gtttgtcctt acaggacgac gacactgcca 3841 gcattaactc atatggtagc cataagaatc gaccattcaa ggatgagagc cacaagggca 3901 gcgccgagac gatggagggc gaggagaagc gggacgccag caaggaggat ttaggtatcg 3961 atgaggagct cgacgaggag ggcgaattgg aggagggccc gctcgacggc gatatcatca 4021 tacatgccaa cgatgaggat atactcgatg aatatccagc tgattgctgc cccgattcgt 4081 actataagaa atttccgatc ttagccggtg atgatgactc gccgttctgg caaggatggg 4141 gcaatttacg actgaaaact tttcaattaa ttgaaaataa atattttgaa acagctgtta 4201 tcactatgat tttaatgagt agcttagctt tggcattaga agatgtacat ctgccacaaa 4261 gacccatact gcaggatatt ttatactata tggacagaat atttacggtt atattcttct 4321 tggaaatgtt aatcaagtgg ctggcgctcg gcttcaaagt gtacttcacg aacgcgtggt 4381 gctggctcga tttcgtcatt gtcatggtat cgcttatcaa cttcgttgct tcacttgttg 4441 gagctggtgg tattcaagcc ttcaagacta tgcgaacgtt aagagcactg agaccactac 4501 gtgccatgtc ccgtatgcag ggcatgaggg tcgtcgttaa tgcgctggta caagctatac 4561 cgtccatctt caatgtgcta ttggtgtgtc taatattttg gctaattttt gccataatgg 4621 gtgtacagct ttttgctgga aaatatttta agtgcgagga catgaatggc acgaagctca 4681 gccacgagat cataccaaat cgcaatgcct gcgaaagcga gaactacacg tgggtgaatt 4741 cagcaatgaa tttcgatcat gtaggtaacg cgtatctgtg ccttttccaa gtggccacct 4801 tcaaaggctg gatacaaatc atgaacgatg ctatcgattc acgagaggtg gacaagcagc 4861 caattcgtga aacgaacatc tacatgtatt tatatttcgt attcttcatc atatttggat 4921 catttttcac actcaatctg ttcattggtg ttatcattga taattttaat gagcaaaaga 4981 aaaaagcagg tggatcatta gaaatgttca tgacagaaga tcagaaaaag tactataatg 5041 ctatgaaaaa gatgggctct aaaaaaccat taaaagccat tccaagacca aggtggcgtc 5101 cacaagcaat agtctttgaa atagtaaccg ataagaaatt cgatatagtc ataatgttat 5161 tcattggtct gaacatgttc accatgacac tcgatcgtta cgatgcgtcg gacacgtaca 5221 acgcggtcct tgactatctc aatgcgatat tcgtagttat tttcagttcc gaatgtctat 5281 taaaaatatt cgctttacga tatcactatt ttattgagcc atggaattta tttgatgtag 5341 tagttgtcat tttatccatc ttaggtctcg tacttagcga tattatcgag aaatacttcg 5401 tatcgccgac actgctccga gtggtgcgcg tggccaaagt gggtcgcgta ctgcgtctgg 5461 tgaagggcgc caagggtata cgaacgctgc tgttcgccct ggccatgtcg ctgccggcgc 5521 tgttcaacat ctgcctgctg ctgttcctgg tcatgttcat cttcgcgata ttcggcatgt 5581 cgttcttcat gcatgtgaag gagaagagcg gcatcaacga cgtctacaac ttcaagacgt 5641 tcggacagag catgatcctg ctctttcaga tgtctacctc agccggttgg gatggtgtac 5701 tcgacgccat tatcaatgag gaagcatgcg atccacccga caacgacaaa ggctatccgg 5761 gcaattgtgg ttcagcgacc gttggaataa cgtttctcct ctcataccta gttataagct 5821 ttttgatagt tattaatatg tacattgctg tcattctcga gaactatagt caggccaccg 5881 aggatgtgca ggagggtctc accgacgacg attacgatat gtactatgag atctggcaac 5941 agttcgatcc ggagggcacc cagtacatac gatacgacca gctgtccgag ttcctcgacg 6001 tgctggagcc cccgctccag attcacaagc ccaacaagta caaaatcata tcgatggaca 6061 tacccatctg tcgcggtgac ctcatgtact gtgtggacat actggacgca ctgaccaaag 6121 actttttcgc gcgcaaaggc aatcccattg aggagacggg cgagattggt gagattgccg 6181 ccaggccgga caccgagggc tacgagcccg tctcctccac cctctggcga cagcgggagg 6241 agtactgtgc ccgcctcatt caacatgcct ggcgcaagca taaaacgcgc gccgagggcg 6301 gtggtgcacc gtccgacgcg gaaggcgacg gccccgaaga tggtgatgcg ggtggcggtg 6361 gcggggcggc gctgatgctg ggtgttctgg atgttccaga tgctgctggc gatgcagcaa 6421 ccactggctc ccatgacggg gcaacggcac tcgatcccga gaccgatcca tcgggagtac 6481 cggcggcagc ggcggtggcc ccacagccag ccggtgacgg cggcgaggga ccggatggag 6541 gagcaacagc cgatccgcac gagagcaatg taaatagtcc gacgatggac ggcgcgacgg 6601 cgggcagccc gggcgcaggg agcgctggca gcactggccg acagacggcc gttctcgtgg 6661 agagcgatgg gtttgtgacc aagaacgggc acaaggttgt aatacactcg cgttcgccga 6721 gcataacgtc gcgcacggcg gatgtctgag ccaggcctcg cccccccctc caagatgcac 6781 gcgagtatta ggtgcaggtg cagatgcagt gcagtggtgg tgccacaaca acaacaacaa 6841 caacagcagg tgccactggt agctgcaatt gcaactgcaa cagcagcaac aggaagaa