Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_041591990 5270 bp mRNA linear INV 14-MAY-2021 mRNA. ACCESSION XM_041591990 VERSION XM_041591990.1 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq; corrected model. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## COMPLETENESS: incomplete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-119 JAECWW010000165.1 3052859-3052977 120-248 JAECWW010000165.1 3055772-3055900 249-369 JAECWW010000165.1 3055994-3056114 370-968 JAECWW010000165.1 3056145-3056743 969-1445 JAECWW010000165.1 3057645-3058121 1446-4727 JAECWW010000165.1 3058196-3061477 4728-5270 JAECWW010000165.1 3061479-3062021 FEATURES Location/Qualifiers source 1..5270 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..>5270 /gene="LOC111066368" /note="The sequence of the model RefSeq transcript was modified relative to its source genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns" /db_xref="GeneID:111066368" CDS 51..>5270 /gene="LOC111066368" /note="The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon" /codon_start=1 /product="LOW QUALITY PROTEIN: mucin-19" /protein_id="XP_041447924.1" /db_xref="GeneID:111066368" /translation="MGWERRVKPRMIRMLGKRQKNKKTKYDAWEDSDFNDLDDASLKK LLEEAYWYRNPGDRKNKSERFLQMLKKAEYDEEISYRAIKSCLTLNPITLATSASTSG AAGIGSNSNNNTHHTNNRSGERHKQGGSLQDLVEAAHRSGSATSSAAAAAAAASATSA TTQRFNCDYQLSGRANRRHQQQQQQQHNNNQNAPSASKKIKNWSASGRQREGGSLPSS VNFESAATSMDAKLKQTMAESSTTSSQSQASTGKISAGSCSSLPSHLGETEAGTQFDM DEDETGGGAASGSAGAGPGPGHIQQEYLLELSGDNRVIKKKKPGANQSMSYLSTKVLD NIMQNYSPQQPESKDSAIGSEYQIGETMPFLGPVGVRPPGTPHIHLHQQHVQLQQQYP TGAHFERGADDPTRKVDAGYVSLSDSYPACSSVYADTSTVSHANSRATTSSGDVFGKK GGRAGPISTGAKSTSRNLDENGNALSDGYGTNNTPSSSSNNGNGNGGGGSSSNQFTAL ITTTMGANAPASSTNRQNSVSTLLTTGSNTTTTAMAAAAVAASFNSQLQQVTVGNGTA VAAGAAAGVGAGAVVSGASAGTGGQPTKTKSKKRSQQERNTTTVDAESVAGYRGKESV EQLVKYIENDGNSGGQKKKERKKQNQKLKKSNSLEELRSCSKMEADDLKRESATTEMM PQKKDANNGNASGSGKHNSASVADISKNCSKEQQQATTVQVQVRGAAAAQQRKGERRS WGTEELQYLGDQDYRKPGLGKAAARSEPDIEAEPMPLSLPALSCMSEMDALNTVLSET AEFHVVTKKKKPKKQRAVTMDDAAVAAAAHAGGNLQRMQQITKSASSNMMSQRAHYYT AYTNSGGSSSTGSSNHHGQYPSKSAQQQQPQYQETQPQHHHHHHHHYHHHHHHGGSGS AKKDSSRRKSTSSMPPSEKSDSSDLDSVHSLPIQTVKKKSLGFSSSGGSSSGGAATSN KERAAQAATQRQVKKKTLTPAPISYADIARNKREALKNASGGIGNGSANASDPEPTEA VAGGAAADKPTTGGKGSKSKVKPDFPELPVALSIPVAISTGTSTSTSTNTASNQVASS SSNNSSSAGSISYSKSLNATPASSTSDVDASPELTPTCTTAPSSSLSSSQPSLQKSKS VEHDATYSFNSSNLDQQYPALEKTVKRHSTTNVSLTAAACPSAGSGSGSGSAAGTATS SIFNFAAATKLQMVDKSTGTTSLQTTSAKSKAKSKDLSYSSASSTSSSSGSSSGSSSK KSMKLGHDEAATVPVPVPAPVPAPVPVAQKSTTATQTEGTKKMGHKMSHSSSKLTPEI IAGRPAVIILNDDRDSGEEGLNNEFIFGDFNEDELKLFDDKKEEKEKEEKEIKKEKQK ENEKSEKKVQPKPESQSKPQAEPKPKVQPTKSQAEPQPQPKPQAEPQPRPKLQAEPQP KPKPLATQMDKQEPIDIDPEDDDDQIPEAEPEQIGEDKAEKKEAENTTATQSDVSSSS YQQLILNDSGAASDVVNSSASLDMLSISGEAVQSSSPNSAAISTNSGSSSLINSSTSS TPSSDSAQNSNSSSSVSISSSSGGNAPLGGLCSGHGSGAAYVANQSSDSGIYGAANTS VKDHINQFLSRASSSSDEPLPNVPISMQQLETCNDIEAAIIAAARAAAAARSNNCSRR NSQELEPPQSQSLSKSQQHQSPVAKSKIVPVYTTYNVGVQDYDEDLEELSFLADLRDA EVDVEQEAEVKAEA" misc_feature <4209..>4541 /gene="LOC111066368" /note="transport protein TonB; Provisional; Region: PRK10819" /db_xref="CDD:236768" ORIGIN 1 tcttgacgat acgtcaaagc tggaaggacc cacacgcagg tgcctgcagt atggggtggg 61 agcgaagggt aaaacccagg atgatcagaa tgttgggaaa gcgacagaaa aataaaaaga 121 caaaatacga tgcctgggag gatagtgact tcaatgatct cgatgatgcg tcattgaaga 181 agctactcga ggaggcctat tggtaccgta atcctggcga caggaaaaac aaaagcgagc 241 gctttctgca aatgctcaaa aaggctgagt acgacgaaga gatctcttat cgtgccatca 301 aatcctgcct cacactcaac ccaatcacgc tagcgacgtc agcgtccaca tccggtgcag 361 ccggcattgg cagcaacagc aacaacaaca cccaccacac aaacaatcga tcgggggagc 421 gccacaagca gggcggctcc ttgcaggatc ttgttgaggc ggctcatcga agtgggtcgg 481 ccaccagctc tgcagcggca gcagcagcag cggcgtcagc cacatcggcg acaacccaac 541 gtttcaactg tgattaccag ctgagtggac gcgcgaaccg tcgccaccag caacagcaac 601 agcagcagca caacaacaac caaaacgcac cctctgcctc caagaagatc aagaactggt 661 ccgcgtcggg acggcagcgc gagggaggaa gccttccgag tagcgtcaac tttgagtcag 721 ccgccacgtc catggatgcc aagctgaaac agaccatggc cgagtcatcg acgacatcct 781 cccagtcaca ggcttcaact ggcaagatca gcgccggcag ctgcagcagc ctgcccagcc 841 acctgggcga gactgaggcc ggcacccagt tcgatatgga cgaggatgag acgggcggtg 901 gtgctgcgag tgggagtgct ggcgctggcc ctggccctgg ccacatccaa caagaatatc 961 tgttggagct ttcgggtgac aatcgcgtaa tcaaaaagaa gaaaccaggc gccaatcagt 1021 caatgtcgta tctcagcacc aaagtgctcg ataatatcat gcaaaactat agcccgcagc 1081 agcccgaatc gaaggactcg gccattggca gtgagtatca aattggcgag acaatgccgt 1141 ttttggggcc cgttggcgtt aggccacccg gcacgcccca catacatcta caccagcaac 1201 acgtacagct gcagcaacaa tatccgacgg gtgcgcactt tgaacggggt gcagacgatc 1261 ccacacgcaa agtggacgcc ggctatgtat cgctgagcga cagctatccg gcctgctcat 1321 cggtctatgc cgatacatcg acggtgtccc atgcaaacag cagagccacc acctcttcgg 1381 gggatgtgtt tggaaagaag ggcggacgtg cgggtccgat ttccacgggt gccaagtcca 1441 catcgcgcaa ccttgatgag aacggcaacg ctctgagcga tggctatggc accaataaca 1501 cgcccagcag cagcagcaac aatggaaatg gcaacggcgg tggcggcagc agctccaatc 1561 agtttacggc cctgatcact accacgatgg gtgccaatgc accagcatcg tccacaaacc 1621 gacagaacag cgtgtccacg ctgctcacaa ccggaagcaa caccaccacc acggcaatgg 1681 cggccgctgc agtggctgcc tccttcaata gccagttaca gcaggttacc gttggcaacg 1741 gcaccgcagt cgcagctgga gctgcagcgg gagtgggtgc cggagcagtt gtaagtggcg 1801 ccagtgccgg cactggggga cagcccacca agaccaagtc aaagaagagg tcgcagcagg 1861 agcgcaacac aaccactgtc gatgctgagt cggtggccgg gtatcgcggc aaggagtcgg 1921 tggagcagct ggtcaagtac attgagaacg atggcaacag cggcgggcag aaaaagaagg 1981 agcgcaagaa gcagaaccag aagctgaaga agagcaactc gctggaggag ctgcgcagct 2041 gttccaaaat ggaggcggac gacctgaagc gcgagtcggc caccaccgag atgatgcccc 2101 agaagaagga cgcaaacaat gggaatgcca gtggcagtgg caagcacaac tctgcttctg 2161 tggcggacat aagcaagaac tgcagcaagg agcagcagca ggccacaact gtccaggtgc 2221 aagtgcgtgg agcagccgct gcccagcagc ggaaaggcga acgccgctcc tggggcaccg 2281 aggagctaca gtatctgggg gatcaggact accgcaagcc cggcttgggt aaggcggcgg 2341 cccgctctga gcccgatatc gaggcggaac cgatgccact ctccctgcca gccctctcct 2401 gcatgtcgga aatggatgcc ctgaacaccg tcctctcgga gacagccgaa ttccatgtgg 2461 tgacaaagaa gaagaaacca aagaagcagc gagccgtcac catggacgat gcggccgttg 2521 cggccgctgc ccatgcgggt ggcaatctgc agcgcatgca gcagatcacc aaatcggcct 2581 cctccaacat gatgtcgcag cgggcgcact actacacggc gtacaccaac agcggcggca 2641 gcagcagcac cggctccagc aaccatcacg gccaatatcc gagcaagtcg gcacagcagc 2701 agcagccgca gtaccaggag acacagccac agcatcacca tcaccaccat catcattacc 2761 atcatcatca ccatcatggt gggtcgggat cggccaaaaa ggacagctcg cgacgtaagt 2821 ccacatcctc gatgccgccc tcggagaaat ccgattctag tgatctcgac tcggtccact 2881 cgttgcccat tcagacggtc aagaagaaga gcctcggctt tagcagcagt ggcggcagca 2941 gcagcggcgg cgccgccacc agcaacaagg aacgggcagc gcaggccgcc acccagcgtc 3001 aggttaagaa aaagacactg acaccagctc ccatttccta tgcggacata gcccgcaaca 3061 agcgggaggc cctgaagaat gccagtggcg gcatcggcaa tggcagcgca aatgccagcg 3121 acccagagcc aacggaagca gtagctggcg gagcagcggc tgataagccc accaccggcg 3181 gcaagggcag caaatctaag gtcaaacccg atttcccaga gctgccagta gctctatcca 3241 taccggtagc catcagcacc ggcaccagca ctagcaccag caccaatacg gccagcaatc 3301 aggtggccag tagttccagc aacaattcgt cgtcggcggg atcgatcagc tactcgaaga 3361 gtctgaatgc gacgcctgcc agcagcacca gcgacgttga tgcctcgcca gagctcacac 3421 ccacatgcac gactgcgccc agcagcagcc tgtcctcgtc acagccctcg ttgcaaaagt 3481 ctaagagtgt ggagcacgat gccacctata gcttcaacag cagcaacctc gatcagcagt 3541 atccagccct ggagaagact gtgaagaggc atagcacaac caatgtttcc ctgacagctg 3601 ccgcctgtcc atccgctggc tctggctcgg gctccggatc ggctgcgggc acggcaacgt 3661 cttcgatttt caattttgct gccgcaacta aattacaaat ggtagacaaa tcgacgggaa 3721 ccacatcatt acagactacc tcagccaagt ccaaggccaa gtcaaaggat ctgtcataca 3781 gcagcgcgag cagcaccagc agcagctcgg gcagtagctc gggcagcagc agcaagaagt 3841 ccatgaagct tggtcacgat gaggcggcga cagtgcccgt tcccgtgcca gcgccagtgc 3901 cagcgccagt gccagttgcc cagaagtcta cgacagccac ccagaccgag gggaccaaga 3961 agatgggaca caagatgtcc catagcagca gcaagctgac acctgagatt attgctggtc 4021 ggccggcggt gataatactc aacgatgacc gcgactcggg agaggaggga ctcaacaacg 4081 agttcatctt tggcgatttc aacgaggatg agctgaagct cttcgacgac aaaaaagagg 4141 agaaggaaaa ggaggagaaa gaaattaaaa aagagaaaca aaaggagaat gagaagagtg 4201 agaagaaggt gcaaccgaaa ccagagtcac agtcgaagcc acaggcagag ccaaagccga 4261 aggtacagcc cacaaagtca caggcagagc cacagccaca gccaaagcca caggcagagc 4321 cacagccacg gccaaagctg caggcagagc cacagccaaa gccaaagcca ctagccacac 4381 agatggacaa gcaagagcca atagatatag acccggagga cgatgacgat cagattccag 4441 aagcagaacc agaacaaatt ggagaggaca aagccgagaa gaaggaggca gaaaatacca 4501 cagccacaca gtcggatgtg agctccagta gctatcagca gctgatactg aatgactcgg 4561 gcgccgcctc cgatgtggtc aacagttcgg ccagtttgga catgctatcg atctcaggcg 4621 aggccgtgca gtcgtcgtcg ccaaactctg cggccatttc cacaaactcg ggctcatcca 4681 gcctaatcaa ttcgtcaaca tcctcaacac cttcgtccga ttcggcacaa aattccaact 4741 cgtcgtcatc tgtttcgata tcgtcgtcct ctggtggcaa cgctcccttg ggcggcttgt 4801 gctccggaca cggttcgggt gcggcctatg tggcgaacca gtccagcgat agtggcatct 4861 atggtgccgc caacacgtcc gtaaaggacc acatcaacca gttccttagc cgggccagca 4921 gcagtagtga tgagccgctg ccgaatgtcc ccatctccat gcaacagttg gaaacctgca 4981 atgacattga ggcggccatc atagctgctg cccgggccgc ggccgccgca cgcagcaaca 5041 actgcagccg cagaaattcc caggaactgg agccgccaca gtcacagtcc ctgtccaagt 5101 cgcagcagca tcagagccca gtggccaaat cgaaaattgt gcccgtgtat acgacctaca 5161 atgttggcgt acaggactat gacgaggact tggaggagct gagcttcctg gccgacctcc 5221 gagatgcgga ggtagacgtc gagcaggagg cggaagtgaa agcggaggcc