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LOCUS XM_041591981 6602 bp mRNA linear INV 14-MAY-2021 mRNA. ACCESSION XM_041591981 VERSION XM_041591981.1 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq; corrected model; includes ab initio. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-206 JAECWW010000165.1 1660426-1660631 c 207-839 JAECWW010000165.1 1659661-1660293 c 840-1147 JAECWW010000165.1 1659273-1659580 c 1148-1511 JAECWW010000165.1 1658849-1659212 c 1512-1702 JAECWW010000165.1 1658593-1658783 c 1703-2683 JAECWW010000165.1 1657547-1658527 c 2684-4316 JAECWW010000165.1 1655913-1657545 c 4317-6428 JAECWW010000165.1 1653760-1655871 c 6429-6602 JAECWW010000165.1 1653506-1653679 c FEATURES Location/Qualifiers source 1..6602 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6602 /gene="LOC111072421" /note="The sequence of the model RefSeq transcript was modified relative to its source genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:111072421" CDS 113..6511 /gene="LOC111072421" /note="The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon" /codon_start=1 /product="LOW QUALITY PROTEIN: protein ELYS homolog" /protein_id="XP_041447915.1" /db_xref="GeneID:111072421" /translation="MDWYKVDVDERRSSKFPERAIPGYCQQSDDRTDYLGGIIYGGQW GWMTNRYSKDATLLICSLSGGECILRHVFWREEANSGQRCSISCVEELLPGQRDAMIL LAVCLETWSDKEIRPENCAKAKTQIAILSTYYNQVIRYIDLDGLYCSTLKYLDTQICQ RTRLRNFDGCLAVGTDAGAVLLCDIKLQNLIENRSRNIRLPQNEIDCGQVVRRHSSEC SIDNINTWLHECRDYNGHLAVEVDVGKSEVRCLIFVHLITGFAAGLKDGRIMIYDLDS FHITAVLRPPSDLEVSVERICCVVPPDDPKPCLFILGMYGGATNTTTILHSIHYRHSY ADDESYGVYFKNYKSAETCIRLLLDGGNCSVLGCTTASTCSFSGDNGTLLAILSWYSH TEGRNKLVLFDMNQWYKDEMPNCLHLYEKPNFLSGYSLAGQAPGLGIHLNASKILHFI SLQRYDEHFYPNSLTFDFSLLTAEGCQYYVHEGLQHRFLRNLQSEKASLFLVPEATHK EIVQLRLLPQFSELNPDATFSKMAIYEEILSVALEHGCISLLKDCARNWIDGSYMCNL RVPTALSLSTLTNWIVKRAAQIKARCSELCQGIFDYGGYPLDERERKELKVLNGQLGN LDKLQSYIVSVGKRCLAHSLLTEIEANEQVIRTVYTYQRVLLFFIRWGLLPEGQQQLQ QQEEEEDDEQQSPPGKQPHSALIQLRRLYADRRPSGRDNLYIGGLLRHISQESGGAAV DLAYPPDTLQSIMQLMLSRTTDMDHKHEVLLYLLFDLDGVQMAKVKLSDRFKTAFGLQ TQLVTRVKSLWALDHGDHSVSCEELQFNVCVVFNLPSDAHPIPPHAEMHETALELLVS RNPYLNWHVELLVEALLSKGAISDAMSVVHRPPGPLSSLTRLKVLMASKNIPEAFDYA RRNDNDETGRPLLEYFFRQSIEMQQFKALAQLCLRESEEELVLRLLRECKTPVTDSVQ LILLLQKSKYIEAVSFMDEVAAEREIAAGDSSRDIIFAYRSTMNPVSQTLAGAYFRIR ENLDVEPTEKVHPEPLSSQLIRDKKKGLRGGVFQSSALSAHWATLYSMDSTAKGQAIP CHQVPFLRSSLYGLSQLPRRRRTVRPVPHQAVEKRVREQEESELVGCRGGRAGDSHTL QPSKRRRMLSDEFVAGVCDFVGRKLNPIAEPDQTEVDQHQQANELLRVPQFLRPKKPP LQQSINSPPVTILKRRSALESVASTPPVATSTTSMVEAKRFRFMQPTPLPCHGLNDSN AMEVDSSLNAQEKDEEDEEEEEETDEIIVEIEPAVSISDSSQSDEDEFVSPLSTPNVS VASPRLKASPEQRQQELSPPPMAPPAGPQPRSSLNQGVRSESSSGFGSFASVLTSETA SHEFVPTVCSSKMGTQSIISTGTASVKISERTTICGEMDDPDSEPDSTAPDWYSSPPV RLQEQEHKEPQMLDTTLGMSTYDVTAREEPLLLTTKNDDIMQVLEVEEVEEEEPWPLE EIDEEIQLEEIEEDELMEDYLQEAQEQAQLQARPSSYNRTYMGSSDDPPQERSTSPSL SLSSEMSNMSSSRTLPEAMQSADAMYSIVIESTGSITTSRSVTHTPTSFLPSDTNVSQ NSSPRATRGTGGNGSPRALYRANSLETVDDLDTTKGSLEEEEEDDEDDCVIALDGTRV GGYVARPSQSAPSSSAELFAFKDETHKENVPGDGPSLSVGATATDTSIVILDSSEDEV EIKAEVEAEAGDRTGDASKLKSRVDSGSGSDSGSETGDSGSGSGPSSPSGSGSGSTSA SESESSSSSKLSSSGAAAPAVNKLPLPPLPEIAEDVEVESPDEKSPQNVPEERKEKSE SKDEEQKEQQQQQPQAEDEPQTTAHDDDSKHSLTLAFSDDEEERVAAVAPVAPRVLRS RSKSRTSPVPVPVPPSPTKPTLRARLRSGDGSSSGGSGTPPVLTPKRRNGAHHKNALE VIDEQKSLGSGPTVVLTRTRKQRSVEPEGTPTKSARAKRATSTTPLSQATTAEPRQLR GISEPPVKSESRKQLRTSAAEEKLPEASGLESVPLVRRTSRRLNSGLSDQQPSPATTP IREIAGRELRPRRTRTSSESVASPATPTPRQVSSEANVPLKKRGRSKPVDDGDGKSKK " misc_feature <602..1537 /gene="LOC111072421" /note="beta-propeller of ELYS nucleoporin; Region: ELYS-bb; pfam16687" /db_xref="CDD:465233" misc_feature 2276..3001 /gene="LOC111072421" /note="Nuclear pore complex assembly; Region: ELYS; pfam13934" /db_xref="CDD:464050" ORIGIN 1 ggtttttgat tgcattgctg gtcacactgc ttgaaatgta aaaattcgca caacaaaaaa 61 ttgctacata cgtatatata ttttgttaaa ttttccggta aatgatataa aaatggattg 121 gtataaagtg gatgtagatg agagacgcag ctcgaaattt ccagagcgcg ctattcccgg 181 ctactgccag cagagtgacg accgcaccga ttaccttggc ggcatcatct atggcggcca 241 gtggggatgg atgacaaaca gatactcaaa ggatgccact ctgctgatct gttcgctgag 301 cgggggcgag tgcattttgc ggcacgtatt ctggagagaa gaggctaaca gtggccagcg 361 ctgcagcatc agttgtgtgg aggaactcct tcctggccaa agagacgcca tgatattgct 421 cgctgtgtgc ctggagacgt ggagcgataa ggaaatccga cccgagaact gtgccaaggc 481 caagacacag attgccatcc tctcgacata ttacaatcag gtgattcgct acatcgacct 541 ggacggcctc tactgcagca ccctcaaata tctggacacc cagatctgcc aacgtacgcg 601 tcttcgcaac tttgatggct gcctggcggt gggcaccgat gcgggagctg ttctgctctg 661 cgacataaaa ttacaaaatt tgattgaaaa tcgcagtcgg aacatacgac tgccgcagaa 721 cgagatcgat tgtggacagg tggtccgaag gcactcctcc gagtgctcca tagacaacat 781 aaacacttgg ctgcacgaat gtcgcgacta caatggccac ttggcagtgg aggtggatgt 841 gggcaaaagc gaggtgcgtt gcctcatatt cgttcattta atcaccggct ttgccgctgg 901 cctcaaggat ggccgcatta tgatctacga tctggatagt ttccatatca ccgctgtttt 961 gcgtcccccg agtgacttgg aggtgagcgt ggagcgaata tgctgcgttg tgccgccaga 1021 tgatcccaag ccctgcctct tcattctcgg catgtacggt ggggccacca atacgaccac 1081 catactccat tccatccact acagacactc gtacgcggat gatgagagct acggagtcta 1141 ctttaagaac tataagagcg ccgaaacctg cattcgtctg ctgctcgatg gcggcaattg 1201 ctccgtgctc ggctgcacaa cggcctccac atgcagcttt tccggcgaca atggcaccct 1261 gctggccata ctcagctggt attcgcacac ggagggcagg aacaagcttg tgctctttga 1321 catgaatcag tggtacaagg acgagatgcc caactgcctg cacctgtacg agaagcccaa 1381 ctttctgtcc ggctactcac tggctgggca ggcgccaggc ctgggcattc acctgaatgc 1441 cagcaaaatt ctgcatttca tttcgttgca gcgctacgat gagcacttct atccgaactc 1501 cttgaccttc gatttctcac tgctaacagc tgagggttgc cagtactatg tgcacgaggg 1561 gttgcagcat cgctttctgc gcaacttgca gagcgagaag gcctcactct ttctggttcc 1621 ggaggccaca cacaaggaaa ttgttcagct gcgcctcctg ccccagttca gtgagctcaa 1681 tccggatgcc acattctcca agatggccat ctatgaggag atcctctcgg tggccctcga 1741 acacggctgt ataagcttgc tgaaggattg tgcacgaaac tggatagatg gcagctacat 1801 gtgcaacctg cgcgttccca cagccctctc cctgtcgacc cttaccaact ggatagtgaa 1861 gcgtgccgca cagattaagg cacgctgctc ggagctgtgc cagggcatct ttgactatgg 1921 cggctatccg ctggacgagc gcgagcgcaa ggagctcaag gtgctaaacg gccagttggg 1981 caatttggac aagctgcagt cgtacatcgt gagtgtgggc aagcgctgcc tggcgcactc 2041 gctcctcacc gaaatcgagg ccaatgaaca ggtgatccgc acagtctata cctatcagcg 2101 ggtgctcctg ttcttcataa ggtggggcct gctgccagag ggtcagcagc agctacaaca 2161 gcaggaggag gaggaggatg atgagcagca gtcgccgcct ggcaagcagc cgcattcggc 2221 tctgattcag ctgcgacgtc tctacgccga cagacgcccg tcggggcgtg ataatctcta 2281 catcggtggc ctgttgcggc atatttccca ggagagtggc ggcgcagccg tggacctggc 2341 ctatccgcca gacacgctgc agtccatcat gcagttgatg ttgtcccgga ccaccgatat 2401 ggatcacaag catgaggtcc tattgtactt gctcttcgat ctggacggtg tccagatggc 2461 gaaagtgaaa ctcagcgaca gatttaagac cgccttcggt ctgcaaacgc agctcgtgac 2521 gcgtgtgaag tccctgtggg ccctggatca cggcgatcat tcggtaagtt gcgaggaact 2581 acaatttaat gtgtgtgttg tgttcaatct cccatctgat gcccatccca ttcccccaca 2641 cgcagaaatg catgaaactg ctctcgagct ccttgtgtcc agaaatccct acctcaactg 2701 gcatgtggag ctgctggtgg aagctctcct gtccaagggc gccatctcgg atgccatgag 2761 cgtggtgcat cgaccaccgg ggccgttatc ctctctgacg cgcttgaagg tgcttatggc 2821 cagcaagaac atacccgagg ccttcgatta tgcacggcgc aatgacaacg acgaaacggg 2881 ccggcccctg ctggagtact ttttccggca gtccatcgag atgcagcagt tcaaggcact 2941 cgctcagctg tgcctgcgcg aatcggagga ggagctggtc ctgcgccttc tccgggaatg 3001 caagacaccg gtgacggata gcgttcagtt gattctgctg ctgcagaagt caaagtacat 3061 tgaggcggtc tccttcatgg atgaggtggc cgccgagcgg gagatcgccg cgggagattc 3121 cagccgtgac attatctttg cctaccgctc cacgatgaat cccgtgtccc aaacgcttgc 3181 cggcgcctac tttcgcatcc gcgagaatct ggatgtggag ccaaccgaga aggtgcatcc 3241 ggagccctta agcagccaac tgatccggga caagaagaag ggactgaggg gcggcgtctt 3301 ccaaagctct gccctcagcg cccactgggc gacgctctac agcatggact caacggcgaa 3361 aggacaggcg ataccctgcc accaggtacc cttcctgcgc agctcgctgt acggcctgag 3421 ccagctgccc cgtcgtcgac gcacggtgcg tcccgtgccc caccaggcgg tggagaagcg 3481 tgtacgcgag caggaggaat ccgagctggt cggctgccgc ggcggccgcg ctggcgactc 3541 ccacaccctg cagccatcca agcggcgccg tatgctgagc gatgagtttg tggcgggtgt 3601 gtgcgacttc gttgggagaa agttgaatcc catagctgaa ccagaccaga ccgaagtgga 3661 tcagcaccaa caggccaacg agctgctcag ggtgccgcag ttcctgcggc caaagaagcc 3721 gccgctacag caaagcatca attcaccgcc agtgaccata ctgaagcggc gatcggcact 3781 cgagtcagtg gccagcactc caccggtggc cacatccacc acgtccatgg tggaggcaaa 3841 gcggtttcgg ttcatgcagc caacgccact gccatgccat ggccttaacg atagcaatgc 3901 catggaggtg gacagctcat tgaatgccca ggagaaagat gaggaagatg aggaggagga 3961 ggaggagact gacgagataa ttgtggagat cgagccggca gtctccatct cggacagcag 4021 ccagtcggat gaggatgagt ttgtgtcgcc cctgagtaca cccaatgttt cggtggccag 4081 ccccagattg aaggcatctc cagagcaacg acaacaggaa ctgagtcccc cgcccatggc 4141 tccgcctgct ggacctcaac cacgcagctc gcttaaccag ggcgtaagga gtgagagtag 4201 cagcggattc ggtagctttg cctccgtcct cacgtcagag acggcatccc acgagtttgt 4261 gcccaccgtc tgctcctcaa aaatgggaac acagtcgata atttccaccg gcacagcctc 4321 tgttaagatc tctgagcgta ccacgatctg tggggagatg gacgatcccg attccgaacc 4381 agactcaacc gcaccggact ggtactcgtc gccaccagtt cgattgcagg agcaagagca 4441 caaggagccc caaatgctgg acaccacact gggcatgtcc acatacgatg tgacggcacg 4501 ggaggagccg cttctattga ccacgaaaaa tgacgatatt atgcaagtgc tggaggtgga 4561 ggaggtggag gaggaggagc catggccatt ggaggagatc gatgaggaga tacaactgga 4621 ggagatcgaa gaggatgaac tgatggagga ttatctgcag gaggcccagg agcaagccca 4681 gctgcaggcg aggcccagca gctacaatcg aacgtacatg ggcagctccg atgatccgcc 4741 ccaggagcgc agcacctcgc cctccctaag cctgagcagc gaaatgtcga acatgtcctc 4801 gtcccgcacc ctgccggagg ccatgcagag tgccgatgcc atgtactcga ttgtaatcga 4861 gtcgaccggc tccataacca catcgcgttc ggtcactcac acgcccacct ccttcctgcc 4921 cagcgacacg aatgtgtccc agaactcgag tccgcgggca acgcgcggca cgggcggcaa 4981 cggctcaccg cgtgccctgt accgggccaa tagcctggag accgtcgatg atctggatac 5041 caccaagggg tccctggagg aggaggagga ggatgatgag gatgactgtg tgatcgccct 5101 ggatggcact cgggtgggcg gctatgtggc ccgtccctcc caatcggcgc cctccagcag 5161 tgccgagctg ttcgccttca aggatgagac tcacaaggag aacgtccctg gcgacggtcc 5221 ctccctttcc gttggagcta cggctacgga tacatcaatt gtcattttgg acagcagcga 5281 agatgaggtt gaaataaagg ctgaggttga ggctgaggct ggggacagga ctggggatgc 5341 ttcgaagtta aagtccagag tggactctgg ttcgggatcc gattcaggat cagagacggg 5401 agattccggt tccggttcgg gtccgtcatc cccatcggga tctggttctg gatctacatc 5461 cgcatccgag tcagaatcca gttctagttc caaattgtca tccagtggcg ctgcagctcc 5521 agcggtaaat aagttgcctt tgcccccgct tcccgagatt gcggaggatg tggaggtcga 5581 gtcgccggat gaaaaatccc cgcagaacgt tcccgaagag aggaaggaga aatctgaatc 5641 gaaagacgag gagcagaagg aacagcagca gcagcagccg caggccgaag atgagccaca 5701 gacgacggcg catgatgacg actccaaaca cagtctcacg ttggccttct ccgacgatga 5761 ggaggagcgt gttgctgcag tcgccccagt tgcaccacgc gtccttcgct cgcgttccaa 5821 atctaggacc agtccagtcc cagtccctgt tccgccgtcg ccaacgaagc ctactctaag 5881 ggcgcgcctg cgcagcggtg acggttcgtc cagtggcggc agtggcacgc cacctgtgct 5941 gacgccaaag cgccgcaacg gagcgcacca caagaatgcg ctggaggtga tcgacgagca 6001 gaaatctctg ggctctggtc caacggtggt gctcacccgt acgcgcaaac aacgaagcgt 6061 ggagccggag ggcactccaa caaaatcagc gcgcgccaag cgagccacct cgacgactcc 6121 gctgtcgcag gcaacaaccg ctgagccccg ccagttgcgt ggcattagcg agccacccgt 6181 gaagtccgaa agcagaaagc agctcaggac gagcgcagcc gaggagaagt tgcccgaagc 6241 gtccgggctt gaatcggtgc ctctggtgcg acgcaccagc agacgactca actctgggct 6301 gagcgatcag cagccgtcgc ctgcgaccac ccccatacgg gaaatagctg ggcgcgagct 6361 tcgtcctcgt cgcactcgaa ccagttccga atctgttgcg tcgcccgcca caccaacgcc 6421 gagacaagtg agcagcgaag ccaatgtgcc cctcaagaaa cgcggaagat caaagccagt 6481 ggatgatggc gatggcaaat ccaagaagtg aatggaacac tagcattgca gcagacacta 6541 gaagactctt gtgttattgt atggccttac ctcacaccaa ctcccccatc catccccccc 6601 ta