Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_041591980 3591 bp mRNA linear INV 14-MAY-2021 (LOC111072409), mRNA. ACCESSION XM_041591980 VERSION XM_041591980.1 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq; corrected model; includes ab initio. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 3% of CDS bases frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-132 JAECWW010000165.1 1583654-1583785 133-221 JAECWW010000165.1 1585650-1585738 222-660 JAECWW010000165.1 1585816-1586254 661-818 JAECWW010000165.1 1586316-1586473 819-905 JAECWW010000165.1 1586550-1586636 906-1105 JAECWW010000165.1 1586714-1586913 1106-1465 JAECWW010000165.1 1586976-1587335 1466-1622 JAECWW010000165.1 1587410-1587566 1623-2430 JAECWW010000165.1 1587626-1588433 2431-2777 JAECWW010000165.1 1588435-1588781 2778-2899 JAECWW010000165.1 1588845-1588966 2900-2975 JAECWW010000165.1 1589035-1589110 2976-3591 JAECWW010000165.1 1589193-1589808 FEATURES Location/Qualifiers source 1..3591 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..3591 /gene="LOC111072409" /note="The sequence of the model RefSeq transcript was modified relative to its source genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 29% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:111072409" CDS 1..3591 /gene="LOC111072409" /note="The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon" /codon_start=1 /product="LOW QUALITY PROTEIN: axonemal 84 kDa protein" /protein_id="XP_041447914.1" /db_xref="GeneID:111072409" /translation="MDTKDGGLAWCGVADGWCGAVRCAGDWCKILKTITTADKHHHCV PPKKKLSKKEKARLEAEQAELLRIEMEKEKLKKLEEARQRKKLEMEQAKHRQQQEVAE NRLRRTQLKDSMLFFEAVRTAIEAIKDGERHERDWEKFMRCNGLPNAASPSDLRKYIH QWHADIAQRHREARNWLLRTDERTLLTQDAQVADLTRISLRQQQGRLGDVYAHRIKEV LGILSELDEALPFRQRSVHVAEDLAKLKTEMRVFLRQHLDEFTYKTMSHIERDMEIDR PGVSKHIYSSDVFQSFVWTFSKDAQIALNPKARIGEQSGHNEIDFPTIEMQISLPPTV QLQSSALRGLWLNYDHFSDYCSSYQLRHARSENANILRQTKREWRKRKEILQAMLDEC GRDIPLSELEQLTQEQHSASSQPQRERVYDVDKLYAEYEDELSRAHRRAIGPEAYGML ETDVNLRRYRIIGGVYCIDFLETPQQDKQLNARSFIRTISCANSLVLKEYYQTYKPPP PVLPGVRRLPEEIEAEMRMIESALDKLALVTLQLPDSVIWFEPPVACRWETHIETLEM ELADGMKPVPPAPADAAAATTATPTEATPLSTNAQPSPLKSSPRCPAARLRPHKSTSH PQQTLREITDFDLRAIPSDVDLYGLVKEFVVPRLPQGFCVRLEATTPAESATGMGSGL RRRRVMFLARQTHVRLGQGLGHGTAGGVEAEPTDHLQLGLGLDLGLGIGADFLDTAEP AEMFPPLCFDKLLKFRQAAPVLPQGYLFSQLIEDMDRLWRLQLPREQQAELIQQISEQ LSPTGCAGSEAGQLQQQQQQELEVDPIQPLSQELVDVLQPAAAAAAFAYYTGISFVRD SQLPHDSEMEQSAAATKQPSDGLDSSEDDEEDVDSLLELLEGASTAGNTLHELLAPGP GQSHSENSDSEMRRQKLSSTAAITQGKWSTRDVHDTKFNEDKLSIQFRTGRLGIFGFA LNKYSNMPYQTWDLRPDMKNPGTILFSFTASLISLDMTITVAGYTVNNFQGGSTQGLT EMIGKTLSLAELKATLILSAVDIFPDEDAFCYTEGSCEKNYVMEMHCYACLSTLAQSH NFSWSRWNLLAGSRTAVLLVRELIEGKKVPYYSTLLVTPLKTSIIDCTEVSASFNAVG IAGMEYYADLYQLSQAHAQPVSLEKQRTMSPVLRDNVARILMAIRPLSLC" misc_feature 166..>498 /gene="LOC111072409" /note="Cancer susceptibility candidate 1 N-terminus; Region: Casc1_N; pfam15927" /db_xref="CDD:464947" misc_feature <1000..>1308 /gene="LOC111072409" /note="exonuclease SbcC; Region: sbcc; TIGR00618" /db_xref="CDD:129705" misc_feature 2824..3414 /gene="LOC111072409" /note="Cancer susceptibility candidate 1 C-terminal; Region: Casc1_C; pfam12366" /db_xref="CDD:432508" ORIGIN 1 atggatacca aagatggtgg cctggcatgg tgtggcgtgg cggatgggtg gtgcggtgcg 61 gtgcggtgtg cgggtgactg gtgcaagatt ctaaagacca tcaccaccgc tgacaagcac 121 caccattgtg tgccaccaaa gaaaaagctt tccaagaagg agaaggcccg tctggaggcc 181 gagcaggcgg agctgctgcg catcgaaatg gaaaaggaaa aacttaagaa actggaggag 241 gcgcgccagc gcaaaaaact ggaaatggaa caggcaaagc atcgccagca gcaggaggtg 301 gccgagaatc gtctgcgtcg gacacagctg aaggacagca tgctcttctt tgaggcagtg 361 cgtacggcga ttgaggccat caaggatggc gagcggcacg agcgcgactg ggagaagttc 421 atgcgctgca atgggctgcc gaatgcagcc agtccgagcg atctgcgcaa gtacatccat 481 cagtggcacg cggacattgc ccagcggcac agggaggcgc gcaactggct gctgcgcaca 541 gacgagcgaa cgctactcac acaggatgcc caggtggcgg atctgacgcg catctcgctg 601 cgccagcagc agggacggct gggcgatgtc tatgcccatc gcatcaagga ggtgcttggg 661 attctcagcg agctggatga ggcgttgccc ttcaggcagc gttcggtgca tgtggcagag 721 gatctggcca agctcaagac ggagatgcgg gtgtttctgc ggcagcatct ggacgagttt 781 acctacaaga caatgtccca cattgagcgg gacatggaaa tcgatagacc gggcgtctca 841 aagcacatct acagctcgga tgtctttcag agctttgtgt ggaccttctc caaggatgcc 901 caaattgccc tcaatcccaa ggcacgcatt ggggagcagt cgggccacaa tgagatcgat 961 ttcccaacca ttgaaatgca aatttcactg cccccgacag tgcagctgca gagctcggcg 1021 ctgcgcggcc tgtggctcaa ttatgatcac ttcagtgact actgcagcag ctatcaactg 1081 cggcatgccc gctccgagaa tgccaatatt ctgcggcaga cgaagcgcga gtggcgcaaa 1141 cgcaaggaga tcctgcaggc gatgctggac gagtgcggca gggacattcc gctgtcggag 1201 ctggagcagc tcacccagga acagcactcg gccagctcac agccgcagcg ggagcgcgtc 1261 tacgatgtgg acaagctgta tgcggaatac gaggatgagc tgagtcgtgc ccatcgccgg 1321 gccatcggcc ccgaggccta tggcatgctc gagacggatg tgaatctgcg ccgataccgc 1381 atcattggcg gcgtctactg catcgatttc ctcgagacgc cgcagcagga caagcagctc 1441 aatgcgcgct ccttcatacg aacaattagt tgtgccaaca gcttggtgct caaggaatac 1501 tatcagacct acaagccgcc gccgcctgtg ctgcccggcg tgcgacgact gcccgaggaa 1561 attgaggctg agatgcggat gatcgagtcg gcgctggaca agctggcgct ggtcacgctg 1621 cagttgcccg attctgtgat ttggttcgag cctccggtcg cttgccgctg ggagacgcac 1681 atcgagacac tcgaaatgga gctggcggat ggcatgaaac cggtgccgcc tgccccagcg 1741 gatgcggcag ctgccaccac ggcgacgccc acagaggcga cgcccctctc gaccaacgcc 1801 cagccgagtc cgctgaagag ttcgccccgt tgtccggccg cccgcctgcg gccccacaag 1861 tccacgtcgc acccacagca gacgctgcgc gagatcacgg actttgacct gagggccata 1921 cccagcgacg tggacctgta cgggctggtc aaggagtttg tggtgccgcg gctgccgcag 1981 ggcttctgcg tgcgtctcga ggcgaccacc ccggcggagt cggccacggg catgggctcg 2041 ggtctgcgcc gccgcagggt gatgttcctc gcccgccaga cgcacgtgcg actgggtcag 2101 ggtctgggtc atggcacagc aggcggagtc gaggctgagc ccaccgatca tctgcagctg 2161 ggcttgggcc tggacttggg cctgggcatt ggagccgatt tcctggacac tgcggagccg 2221 gcggagatgt ttccgccgct gtgctttgac aaactgctga agttccgcca ggcagcccct 2281 gtgctgccgc agggctacct tttctcgcag ctcatcgagg acatggaccg cctgtggcgt 2341 ctgcagctgc cgcgcgagca gcaggcggag ctcatccagc agatctcgga gcaactctcg 2401 cccactggct gtgcgggcag cgaggcgggg cagctgcagc agcagcagca gcaggagctg 2461 gaggtggatc ccatccagcc actcagccag gagctggtgg acgtcctgca gccagcagcg 2521 gcggccgccg cctttgccta ctacacgggc atctcatttg tgcgcgactc gcagctgccg 2581 cacgactcgg aaatggagca atcggcggcg gccaccaagc agccatcaga tggcctggac 2641 agcagcgagg acgacgaaga ggatgtggac agtctgctgg agctgctcga gggcgcctcc 2701 acagcgggca acacactgca cgagctgctg gcccctggcc ccggccagag tcacagcgag 2761 aacagcgaca gcgagatgcg caggcagaag cttagcagca ctgcggccat cactcagggc 2821 aagtggagca ctcgcgatgt ccacgacaca aagttcaatg aggacaagct ctcgattcag 2881 ttccgcacag gcagattggg gatctttggc ttcgccctga acaaatacag caacatgccc 2941 taccagacct gggacctgcg accggacatg aaaaatcctg gcaccatcct cttcagcttc 3001 acggcatcgc tgatcagcct ggacatgacc atcaccgttg cgggctacac ggtgaacaat 3061 tttcagggcg gcagcaccca gggcctcacc gaaatgatcg gcaaaacgct gtcactggcc 3121 gagctgaagg ccacactgat cctctcggcg gtggacattt tccccgacga ggatgccttc 3181 tgctatacgg agggctcctg cgagaagaac tatgtgatgg agatgcactg ctatgcctgc 3241 ctctcgaccc tcgcccaatc gcacaacttc agctggtcgc gctggaacct gctggccggc 3301 tcccgcaccg ccgttctgct cgtccgcgag ctcatcgagg gcaaaaaggt gccgtactac 3361 tcgacgttgc tggtgacgcc gctcaagaca tcgatcattg actgcaccga agtatcggcc 3421 agcttcaatg cggtgggcat tgccggcatg gagtactatg cggatctcta tcagctcagc 3481 caggcccacg cccagccggt gagtctcgag aagcagcgca cgatgagtcc ggtgctcagg 3541 gacaatgtgg caaggattct gatggccata cggccattga gtctctgttg a