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LOCUS XM_041591974 6135 bp mRNA linear INV 14-MAY-2021 3',5'-cyclic phosphodiesterase 9A (LOC111070729), mRNA. ACCESSION XM_041591974 VERSION XM_041591974.1 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq; corrected model; includes ab initio. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 3% of CDS bases frameshifts :: corrected 2 indels ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-1148 JAECWW010000165.1 264375-265522 1149-1150 "NN" 1-2 1151-2166 JAECWW010000165.1 265523-266538 2167-2853 JAECWW010000165.1 266644-267330 2854-3179 JAECWW010000165.1 290509-290834 3180-3331 JAECWW010000165.1 295947-296098 3332-3439 JAECWW010000165.1 296160-296267 3440-3566 JAECWW010000165.1 306404-306530 3567-3862 JAECWW010000165.1 306608-306903 3863-4256 JAECWW010000165.1 306973-307366 4257-5495 JAECWW010000165.1 307447-308685 5496-6135 JAECWW010000165.1 308687-309326 FEATURES Location/Qualifiers source 1..6135 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6135 /gene="LOC111070729" /note="The sequence of the model RefSeq transcript was modified relative to its source genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:111070729" CDS 855..5645 /gene="LOC111070729" /note="The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; deleted 1 base in 1 codon" /codon_start=1 /product="LOW QUALITY PROTEIN: high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A" /protein_id="XP_041447908.1" /db_xref="GeneID:111070729" /translation="MYQDSGCSSSSSRRGSTSAAAAAAAAAAAAAAATGAAAGAATAN SSSDEETLETLTIITTTITETEINAAATTATAKAKTTTTTVIATTTATATTAAVXAAT AKVATAATSSDIEDSSLAESESEECLEYIEIDCQTAQGSSGNSNSNSSTSSGSGSGNA VLQRGNNQQLQHPHPHSHSHQQQSTAAAAALGADVRLLRKIGYIASRVRGLSKFYGDF HLVNPYSARRQRRQLQEILLKHSIFDPGKERERALLLAAAAVAVGAAVQQTAAPPLAG NSSSSSIEAASSHSQSRSRSRSSDLEEEEEPEEESSPNEDPLEQPEVTATTPAGTGTT ATATTTTTTTTTTTTTVRRKSSSSSTFSGAAATVSGSVSISASASQSFASTSTPINLL EELLIQFYEDQDQHRCKLTVIRHQRACNSPDTTNNNCNNISNNNNMSSPDNQLPGSST SQAFGAATSGAASYLQPTSLPDGSDNPRRRRASDCSAVQAAQAALSNQLHCITLKNNN CATATGKLPFHRGSCGAAGEHLLAANSIANRATIILSKSCSNVDGDAHGLGMGIGVGV GVGVGVGVGVGVTNQMRASATDIESNTLNGAQGAMATIAAAAASNNGNGNGNGNGNGN NEYSILQLNNTIIQCHFNDDDFRALVKDLKRKVEYTERMNWLCLSKRPLGPPHRKSSL PKHQEVKRRFLEICDTNFSDEVKAALRLPAFDSYEWGDADVIHLMQTMFIELGFIEKF SIPAETLREWLYEVYKHYNEVPFHNFRHCFCVAQMMYAITRQANLLSRLGDLECLILL VSCICHDLDHPGYNNIYQINARTELALRYNDISPLENHHCSIAFRLLEHPECNIFKNF SRDSFNTIREGIIRCILATDMARHNEILTQFMEITPIFDYSNRAHINLLCMILIKVAD ISNEARPMDVAEPWLDRLLQEFFAQSAAEKSEGLPVTPFMDPDKVSKPGSQVRFIGLV LLPLFEALGELVPELTELIIIPVRIALEYYRRLNDAQTKTRKSVADSNTSDSNSGTMD SNAAMVSTPGASGDKMIMDKGQGNAQGAGAGGGGGGGGGGGTGSVSPQMPRSGSGISV KSRRSIPSQKSASRTSVDEPGGMAAELHDLPEGSESGDSETATEVDVAEKTSKFKVDT EGSSNRSKSSHSNSRKSSREKRPSMIGELCSSGGGQRIRNSYGNIHGYHSNRCHFGNN RAVSLDQYSSGHSRRLSDGLPQVISDSNVFYGRHHQRSGGHESAAAGAAGAAQRGQED TNANTSAAAGSGAGSGARAGSNIQLNELLARTEANSDGDADGEISAAEMLPTASVPLL SDVAASASSSNGNVSPPSGQQLEQIGLASNGAPASANANASASSQAGVAAVSGAIAIG GGGGGGAGGSGSGGSGSWKSRLRQFSDYFSFSFDKGNKRFGSTRSSPCHGRANNNGAE AGPSAGDSNSALDVAGGGGAGAGTGPGTGTGTGPGMSGGKPQSICCTISNSQQSSSGR AGASSGGGTMHRHRAYSLDVPCSRGPGMTRHSSNDSSRQSSRHDDSNNTLHSAGGGGG AAGEVPGIRIASVDGVVVIPPSLSVELELGLASLASSSEVAPKI" misc_feature 3141..3827 /gene="LOC111070729" /note="3'5'-cyclic nucleotide phosphodiesterase; Region: PDEase_I; pfam00233" /db_xref="CDD:459723" ORIGIN 1 atttgttagc gtcaaacgga attgttgcca aacggaaacg gaagtggcgc caccccaaag 61 ccccagccac acaaaaccca tccgcccacc gaccggtgac gggagacggg ataccggaga 121 ccgtggcgaa gagtggtaga gggagaggga gagaggagag gcatataact ggcgaagcag 181 acaaacagtt gaataatgca aattaaaata caataaaatg taaaacacaa cagcaacaag 241 ctggtggaaa atagcaaaga aaagcgctag agtcacgcga gtggtgactg gagagtgtgg 301 agtggagact aggaggtgga gagcagagag tagcgagtgg atggtgtaag aggttgacat 361 gcccaaaaaa tgcgcgtggc ggcaactttt ccactgaatt gatttgagca gcggcaacca 421 gtgcgtatac gcaatacgcg atacgcgttc tacggtctgt tctgttccgt tctgtttacg 481 cgggaaattt gcataacttt gctgccgtgg cattaaaaac atcaaaaaca aattgcaagt 541 aacaaaagaa acggccataa aaaggcgcca gcctcataaa aaatacagaa aacggcggaa 601 aaaaaacaga ctcaacgcag aaaaggaaga gagatcctta gtgccagctc aaaattaatt 661 tatgcatcag cagcagcagt agcagcaaat caaatacaaa tacgggaaaa tatcaagaaa 721 aaaaaattaa taacaattaa agcagcggac agcagcgaga gtgtaaacga gcgggtgagc 781 gagcgagccg cgcggcaaac agagaacaag agaaaaaaaa aaaggcaaaa agggttcgcg 841 agggttgcct ataaatgtac caggacagcg gctgcagcag cagtagcagt cgacgtggca 901 gcaccagtgc agcagcagca gcagcagcag ctgcagcagc agcagcagca gcaacaggcg 961 ctgcagcagg cgctgcaaca gcaaacagca gcagcgacga ggaaaccctc gagacactca 1021 cgataatcac cacgaccata accgagaccg aaatcaatgc ggctgccacc acggcaacgg 1081 ccaaagcgaa aaccacaacc acaactgtca tagccacaac gacggcaacg gcaacaacag 1141 ccgcagtgnn ggcagcaaca gctaaggttg caactgctgc aacgagcagc gacatcgagg 1201 acagcagctt ggcggagagc gagagcgagg agtgtcttga gtacattgag atcgattgcc 1261 agacggcaca gggatcatcc ggcaacagca acagcaacag cagcaccagc agtggcagtg 1321 gcagtggcaa tgccgtgctg caacgtggca acaaccagca gctccagcat ccacatccgc 1381 attcacattc gcatcagcaa cagtcaacag ccgccgccgc cgcgttaggc gccgatgtgc 1441 ggctgctgcg caagatcggc tatatagcat cgcgggtccg tggcctgtcc aagttttacg 1501 gcgactttca tctggtcaat ccgtacagcg ctcgtcgcca gcgtcgccag ctgcaggaga 1561 tcctgctgaa gcactcgatc ttcgatccgg gcaaagagcg cgagcgcgcc ctgcttttgg 1621 ccgctgccgc agtggccgtt ggggcagctg tccagcagac agcagcaccg ccgcttgcgg 1681 gcaacagcag cagcagcagc atcgaggcgg ccagcagtca cagtcagagt cggagtcgca 1741 gtcgcagcag cgacctcgag gaggaggagg agcccgagga ggagtcgtca ccaaacgagg 1801 atccgttgga gcagcctgag gttacagcca ccacgccagc aggaacagga acaacagcaa 1861 cagcaaccac aacaacaaca acaactacaa ccacgacaac cactgtgcgt cgcaagtcct 1921 cgagcagctc gacgtttagc ggcgcggcag ccactgtttc cggttccgtg tccatttcgg 1981 cctccgcctc gcagtcgttc gcctcgacca gcacccccat caatctgctg gaggagctgc 2041 tgatccagtt ctacgaggac caggaccagc atcgctgcaa gctgaccgtc attcggcacc 2101 agcgtgcctg caactccccg gacaccacca acaacaactg caacaacatc tccaacaaca 2161 acaacatgag cagcccggac aaccagctgc ccggcagctc caccagccag gcgttcgggg 2221 cggccacaag cggcgccgcc tcctacttgc agcccaccag cctgcccgac ggcagcgaca 2281 atccccgccg gcggcgtgcc agcgactgct cggcggtgca ggccgcccag gcggcgctct 2341 ccaatcagct gcactgcatc acgctgaaga acaacaactg tgccacggcc acggggaagc 2401 tgccgttcca tcgcggcagc tgcggcgccg ccggggagca tctgctcgcg gccaactcga 2461 tcgccaatcg agccaccatc attctgagca aatcctgcag caatgtggat ggcgatgccc 2521 acggcttggg catgggcatt ggtgtgggcg tcggtgtcgg cgttggcgtc ggtgttggcg 2581 tgggagtcac caatcagatg cgcgccagtg ccacggacat cgagtcgaat accctgaacg 2641 gggcccaggg cgccatggcc accattgccg cggcggcagc ctcaaacaat ggcaacggca 2701 acggcaatgg caacggcaac ggcaacaacg agtacagcat tctacaactg aacaacacga 2761 tcatccagtg tcacttcaac gatgacgatt tccgcgccct ggtcaaggat ctcaagcgca 2821 aggtcgagta cactgagcgc atgaattggt tatgtctctc caaacggcca ttggggccgc 2881 cacatcgtaa aagcagtcta ccaaagcatc aggaggtgaa gcgtcgcttc ctggaaattt 2941 gtgataccaa tttctcggac gaggtgaagg ccgccctccg cctgcccgcc ttcgattcgt 3001 acgaatgggg cgatgccgat gtcatccacc tgatgcagac gatgttcatc gagctgggat 3061 tcattgagaa gttcagcatt cccgcagaga cgctgcgcga gtggctctat gaggtctaca 3121 agcattacaa tgaggtgccg ttccataatt ttcgtcactg cttttgcgtt gcccaaatga 3181 tgtacgccat tacacgccaa gcgaatctgt tgagccgcct tggcgatctc gagtgtctca 3241 tcctgctggt gtcctgcatc tgtcacgacc tcgatcatcc cggctacaac aatatctacc 3301 agatcaatgc tcgcaccgag ctggcactca gatataatga catctcaccg ctggagaatc 3361 atcactgttc gatagcattc cgtttgctgg agcatcccga gtgcaacata ttcaagaact 3421 ttagccgtga cagcttcaac accatacgtg agggcatcat tcgctgcatc ctggccaccg 3481 acatggcccg ccacaacgag atcctcaccc aattcatgga gataacgccc atctttgact 3541 acagcaatcg ggcccacatc aatctgctgt gcatgatcct cattaaggtg gcggacattt 3601 cgaatgaggc acggcccatg gacgtggccg agccgtggct ggatcgactg ctgcaggagt 3661 tctttgcaca gagtgcggcc gaaaagtcgg agggattgcc ggtgacgccg tttatggatc 3721 cggataaggt gagcaagccg ggctcccagg tgcgcttcat tggactggtg ctgctgccgc 3781 tcttcgaggc actcggcgag ctggtgccag agctcacgga gctcatcatc ataccagtgc 3841 gcattgccct ggagtattac agacgcctga acgatgccca gacaaagacg cgcaaatccg 3901 tggccgacag caacacttcg gacagcaaca gcggcaccat ggactccaac gcggccatgg 3961 tgagcacccc gggtgcctcc ggcgacaaga tgatcatgga caagggccaa ggcaacgcac 4021 agggcgctgg cgctggcggt ggcggtggcg gtggcggtgg cggtggcact ggcagcgtct 4081 ccccccaaat gccgcgctcc ggctctggta taagcgttaa atcacgccgc agcataccct 4141 cgcaaaagtc cgcctcacgc acctccgtgg acgagccggg gggcatggca gccgagctgc 4201 acgatctgcc cgagggcagc gagagcggcg actcggagac ggccaccgaa gtggatgttg 4261 ccgagaagac atccaagttc aaggtggaca cggaaggcag cagcaaccgt agcaagtcct 4321 cgcactcgaa ctcacgcaaa tcgtcgcgcg agaagcgccc ctcgatgatc ggtgagctgt 4381 gcagcagcgg cgggggccag cgcatccgca actcgtacgg caacatccac ggctatcaca 4441 gcaatcgctg ccactttggc aacaatcggg ccgtcagcct cgaccagtac agcagcggcc 4501 acagccgacg cctgtccgac ggcctgcccc aggtgatctc cgacagcaac gtgttctacg 4561 gacgccacca ccaacgcagc ggcggccacg agtcggctgc agcaggcgca gcaggagctg 4621 ctcagcgtgg ccaagaggac accaatgcca acacgagtgc tgcagctgga tcgggagcag 4681 gatcaggagc cagagctggt agcaacatcc aactgaatga actgctggcc cgcaccgagg 4741 cgaattcgga tggggatgcg gatggggaga tcagtgccgc ggagatgctg cctacggcga 4801 gtgttcccct gctgtcggat gtggcagcga gcgcctcctc ctccaacggc aacgtctctc 4861 cacccagtgg ccagcagctg gagcagatcg ggctggccag caacggtgca ccggccagtg 4921 ccaatgccaa tgccagtgcc agcagccagg ccggagtcgc cgcagtgtcc ggtgctatcg 4981 caatcggtgg cggcggtggc ggcggggccg gtggcagtgg ctccggtggc tccggttcgt 5041 ggaagtcgcg gctgcgccag ttctcggact acttcagctt cagctttgac aagggcaaca 5101 aacgctttgg cagcacccgc agcagtccct gccatggcag ggccaacaac aatggagccg 5161 aagccgggcc cagtgccgga gacagcaaca gcgccctgga tgtggccgga ggaggaggtg 5221 caggagctgg gaccgggcct ggaactggaa ctggcactgg tcctggaatg agtggcggta 5281 agccgcagtc catttgctgc accatttcga atagccagca gtcgagctct ggcagagctg 5341 gagccagcag tggtggcggt acgatgcacc gtcatcgggc ctacagcctg gacgtgccct 5401 gcagccgcgg cccgggcatg acacgccact cgtccaacga cagcagccgc cagtcgtcgc 5461 gccacgatga cagcaacaac acgctgcaca gtgcaggcgg cggcggcggt gctgccggcg 5521 aggtgcccgg catacgcatc gcatccgtgg acggggtcgt ggtcattccg cccagcctca 5581 gcgtagagct ggagctgggg ctcgccagct tggcctcctc ctcggaggtg gcgccaaaga 5641 tttgacaaca ggggagcacc tatgactcca gcaccgagaa gacggccacc gacatctcgc 5701 tgtcccaccc ggggcccatc gttgccctgc ttccgccgga ggacatcgtt ggcgacgacg 5761 acgacgacga cgacgatgca gatgcggatg cggagcatca gctgcagccg gatgccgcca 5821 gcaactgcga ggtctccgcc atatccatga cggtatggtc ggccatcggg cagcggctca 5881 atgccctcgt ttgccattgc tgcgagcgca agttgccaga gcccgaaaat gtctaaatga 5941 accttgccac gccccacgcc cccgtgacag cagctgatga aggactaact gcaactgaat 6001 tgttcccctg gcagtcgact gctttggagt tttacctatt aattttagtc gattgattca 6061 ttttgctcct cctttttttt tgtttacctt ttaagtattt ttttatttat gtacacctac 6121 gcatacaccc acaca