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LOCUS XM_041591970 7380 bp mRNA linear INV 14-MAY-2021 (LOC111066361), mRNA. ACCESSION XM_041591970 VERSION XM_041591970.1 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq; corrected model; includes ab initio. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 5% of CDS bases frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-6459 JAECWW010000165.1 2026990-2033448 c 6460-7380 JAECWW010000165.1 2026068-2026988 c FEATURES Location/Qualifiers source 1..7380 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..7380 /gene="LOC111066361" /note="The sequence of the model RefSeq transcript was modified relative to its source genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:111066361" CDS 152..7273 /gene="LOC111066361" /note="The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon" /codon_start=1 /product="LOW QUALITY PROTEIN: uncharacterized protein LOC111066361" /protein_id="XP_041447904.1" /db_xref="GeneID:111066361" /translation="MEARKCLPEADPCPVRQYLARQAEAQANQRQSLNQYLEKTMSDF PPPHLPGEATKLAASASAAATCQCVARTRPNAILNQFVGGGRKPGKRLLVPDLATDWF RKQKVFLDKISPEELAQGQDRQDRQDRCFGHLDASEYRLPETRCACPATKRSQGQSRV SLARQRHQQLQGKATCGCRSGANGAEDAPAGDEQQQDQQRLAKQMSSSQTITRCRPHV AGCGTEGGMKNSRSRSSRSRSRSSRTSRGVSRSRSRSSSRSTNRSRAKRRNAGGHSPH RRHPIVRRSSCTCLRRSPSCRCPGQMQFQSDGQPMSRECQLATRRTEPLMPCLRRKYE LQRAPQRRLEPQHFRRISPEFFGILKKYEAAMTESCPLYGISIRHWGESAPCCICEED DASPEHMQCLGDESVHAAGAVPSIQQLMASEADTEEYTAAGEHPGVEEQGSEAPAASS GPSPCNDDTCPVRRLEPLPAPVPRAKPKEPEPRPQEPRRKSEAKQEQAEPEEDPQPPS KEPEKKKSGFRCCPCWSRDPLKDDDAAGTQREKPKKEKKEKKEKKEKKEKEKKPKKEK KSKKGDKSAGEVPNAIIPPQAFLSGFAGLCRRCMRSGRHLLYSHNSSYQRIRRQNQGY RNEQAPPAAAAAAAPPPMPYHMRGVCQLQPDVWQFEQQPRTRQQTATDTETEMEAETV SWAAVGAAGGKTQPEWEPSEDEGGSLDSCNCSSTTLRPSSSCEAQPSRGPLCTTRRSQ AGACNLDGCPSSAIWTLQKRSSRPLKRRFVNENFGRRRLPERAERAERAERAEQERTE EQIKGGEDATLRDNNTSSSYVEGFCLKVNKHGTRACYLANDYLQLMKMVARKRARYDC LKTKKTTCRPKPEPSPRPTARSRRASPAAAARGNAAAAAHSNRSRSTGMRTQSAPAAA TTARHPRRRLPPPKMLASPSTDADSDGASSSQDGGSRKAERKKGTSSARNSQTRSSLR KRPARASSSPSPSASPARLKSRSARSSSSSRNVERKPASPTRSARSSAARRHSAQRQR QSTESHTKAVDRVASSSDLDEDCRPNENGTCAQYRAAISHRYPDYAMDETESVPQFKP SDSYASECLCKTYSYSRAGTNAMATAMAPAVAPQDVTEPSPWSAETAAPYQGNAAADW TQEKQANGRKSPEAPKSPDWMGMEEEQQQQPQQPQQQQLQQQQPPSVATQDDTQFDEN PVEWVEEQREPAAAAAADNYAEQPAFAGQRELCHQDCPYWRTVHEEERLQQQQQQQQQ QQHLQLQQQQPQFYSQEGGYDQDDEERPTTSKHLKRLSRSYRLRPPCGGPLRWIANGF TSSKRSSLSDSAPFERGRERAPPAAATAAAAAAVVKKQRPRPPIERGRRYYTETQPKM WYDQCGGLDGMSSSIRSSHSRCSIRALSSNAETVECPCPPLPSIKSENVKPDRWGMQQ PQFQQQQRQPQFQQQQQQPQFQQQQTPRVTPLMQPRQTQMQPQMQPQLQPQMQPKLQP QMQPQMQPQMQPQMPPHHMQMQPRPIQPQPQPQMQMQMQHAMEYQNPNQNQNQNHIEQ NRYRHYEQQQQQQQQQAAAYNPMLSMATAASPLNFPIGSGFGPSKKIPKLLSNQPLEL KPSLAQKLEAKKPKWMHHNHAPLTLRTARPRAEAYYEGKMRRRCLKFMLSIEQGRQPA IPPAQAPAEQEDWSITEQQQQQQHQHQQQHESEPSEELQEEEEQPQERVGQQEEQEPL NDSSEEQVWFGEPGYDVDEGPQWSQTRRSLSGSVVMRPANNAATRIEHPTHQWPYSGQ SQRHDERPSQPSPTYDPYYRVDADHWPPEQQAAHWETPPYHPKQQSPQQQQQQQPPLN QNYQEPQSQRQTSRRPQAQPQPQPQPQPQRQAQPQPQKLPQRQPQTERQPQRQEQPQR QEQPQRQSQRQPRHEQQQPQPERQQDPHLHAHPPHPHAHAHRQPQPQPHVQRQTPLPP PPQPDINARWHWRIPRSVSETRPFYDEEEEQDYAPQEERQPTNWQKHAPPPSYMQPMH HHGVARYSADSGRAAASRSPPRRASRHRAPQRQGGGAAGAITAAALGLRGLVQALGGP RYARNLSTVSGESAEGGGDHGNALDCGQPQPMDFSREQLQFTVEPATAVHRGAPLGAT EQTAPGAVRSYGCALGREQRARTYAVQKRPSAFLARSSRVNGYSKPPSTDNERSSPLS LFAVPTSSSNLAWRAETRAARTITSTRIPGGQEEQPRMPPPVSILSDLDFHTHSTSHN SICSTSGGYRAPLPSLALSEDGTSSLAVFLDNLRARNVLLLPGKPSPLAELPPSGSAA KCSGKQHQQQQEEEEEEEEEKEKVEPTQGRRWFPATPLVIPPTYNALLEEQVLQEYLP TPKCRRFKT" misc_feature 1436..>1687 /gene="LOC111066361" /note="Procyclic acidic repetitive protein (PARP); Region: Trypan_PARP; pfam05887" /db_xref="CDD:368653" ORIGIN 1 cagagaaatg tcgagaagtg tacgaattaa acaaaacctt cgactttcga cggaaatcag 61 ttatcggaaa tagctcaaaa ttttaagtac gacatcagaa gcagagagca gagagcacag 121 agcacagaga ctccatccat agacacggca gatggaagca agaaaatgcc tgccggaggc 181 cgatccctgc cccgtgcgac aatatctcgc acggcaggcc gaggcccagg ccaatcagcg 241 ccagagcctc aatcagtatc tggagaagac catgtccgat ttcccgccgc cccacctgcc 301 cggcgaggcc acaaaactcg ccgcgtccgc gtccgccgcc gccacttgcc agtgcgtggc 361 caggaccagg ccgaatgcga ttctgaatca gtttgtcggc ggtggacgca agccggggaa 421 gcgcctgctg gtgccggatc tggccaccga ttggtttcgc aaacagaagg ttttccttga 481 caagatcagc cccgaggagc tggcccaggg ccaggatcgc caggatcgcc aggaccgttg 541 cttcggccac ctcgatgcct cagagtaccg gctgccagag acccgttgcg cctgcccggc 601 cacaaaacgg agccagggcc aaagtcgcgt gtcgctcgcc cgacagcggc accagcagct 661 gcagggcaaa gccacgtgcg gctgccggag cggggccaac ggggcagagg acgctccagc 721 gggagacgag cagcagcagg atcagcagcg gctggccaag caaatgtcca gcagtcagac 781 catcacacgc tgccggcccc atgtggcagg atgcggcacc gagggtggca tgaagaacag 841 caggagcagg agcagcagga gcagaagtag gagcagcaga actagcagag gtgtaagcag 901 aagtaggagc aggagcagca gcaggagcac aaacagaagc cgagcgaaac gcaggaatgc 961 tggcggccac agtccccatc gccgacaccc gatcgtgcgg cgcagcagct gcacttgcct 1021 acggcgcagt ccctcatgcc gctgccccgg ccagatgcag ttccagagcg acggccagcc 1081 catgtccagg gagtgccagc tggcgacgcg tcgcacagag ccgctgatgc cgtgcctgcg 1141 gcgtaaatat gaactgcagc gggcaccgca gcgtcgactc gagccgcagc actttcgccg 1201 catctcgccg gagttctttg ggatactgaa gaagtacgag gcggcgatga ccgagagctg 1261 tccgctctac ggcatctcga tacggcactg gggcgagtcg gcgccctgct gcatctgcga 1321 ggaggacgat gccagtcccg agcacatgca gtgtctgggc gatgagtcgg tgcatgcggc 1381 gggcgcagtg ccctccattc agcagttgat ggcctccgag gcggacacgg aagagtatac 1441 ggctgcgggc gagcatccgg gcgtcgagga gcaaggttcc gaggctccgg ctgcaagcag 1501 cggtccatcg ccctgcaacg atgacacctg tcccgtccga aggctcgagc ccctgccggc 1561 accagtgccg agggctaagc ccaaggaacc ggagccgaga ccacaagagc cgcgcaggaa 1621 gtccgaagcc aagcaagaac aagccgaacc agaagaagat ccgcagccac ccagcaagga 1681 gccagagaaa aagaaaagcg gcttcaggtg ctgcccctgc tggtccaggg atccccttaa 1741 ggatgatgat gctgccggaa cgcagcggga aaagccaaag aaagagaaga aagagaagaa 1801 ggagaagaag gagaagaagg agaaagagaa gaagccaaag aaggaaaaga aatccaaaaa 1861 gggcgacaaa tccgccgggg aggtgccgaa tgccatcatt cctccgcagg cattcttgag 1921 tggatttgcg ggcctgtgca ggcgctgcat gcgctcgggc cgccatctgc tgtacagcca 1981 caattcgagc taccagcgga tccgtcgcca gaaccagggc taccgcaacg agcaggctcc 2041 accagcagca gcagcagcag cagcaccacc cccaatgcca tatcacatgc gtggcgtgtg 2101 tcagcttcag cccgatgtct ggcaattcga gcagcagcca aggacaagac aacagacagc 2161 cacagacacg gagacggaga tggaagcgga aactgtgtcc tgggcagcag taggagcagc 2221 aggcggaaaa acgcaaccgg aatgggagcc atcagaggat gaaggcggct cccttgacag 2281 ctgcaattgc agcagcacca ccctgaggcc cagctccagc tgcgaggccc agcccagccg 2341 tggccctctc tgcacgacga gacgcagcca ggcgggtgcc tgcaacctcg atggctgccc 2401 atcatcggcc atttggacgc tgcagaagcg tagctccaga ccgctgaagc ggcgatttgt 2461 taacgagaac tttggcaggc gaaggctgcc agagagagcc gaaagagccg aaagagcaga 2521 aagagccgag caggagagaa cagaggaaca gatcaagggc ggagaggatg ccacgctgag 2581 ggataataat acgtcgtcgt cgtatgtgga gggtttctgc ctgaaggtga acaagcatgg 2641 cacacgggcc tgctatctgg ccaacgatta tctgcagctg atgaaaatgg tggccagaaa 2701 gcgggcccgt tacgactgcc tcaagaccaa gaagaccacc tgccggccca agccagagcc 2761 cagtccccgg cccacggcgc gcagtcgacg agcttcgccc gcggcagcag cgcgcggcaa 2821 tgcagcagct gccgcccact cgaatcggtc acggagtacc ggaatgcgta cgcagtccgc 2881 ccccgctgcg gcaacaacgg ccaggcatcc aaggcgtagg ctaccaccac ccaagatgct 2941 ggcgagccca tccacagatg ccgactcgga tggggccagc agctcccagg acgggggcag 3001 ccgcaaggcg gagaggaaga aaggcacaag ctccgctaga aattcacaaa caagaagctc 3061 cctcaggaag cgaccggcca gagccagttc cagtcccagt cccagtgcga gtcccgcccg 3121 cttaaagtcg cgctcggccc gcagctcgtc gtccagcagg aacgtggaga gaaagccagc 3181 atcgcccaca cgtagtgcca gatcgtcggc agccaggaga cactcggcac aaaggcagcg 3241 ccagtcgacg gagtcgcata cgaaggctgt cgatcgtgtg gcatcgagca gcgacctcga 3301 tgaggactgt cggccgaatg aaaacggaac ttgtgcccag tatcgtgccg caatcagcca 3361 cagatatccg gactatgcca tggacgaaac ggaatccgtg ccgcaattca agccatccga 3421 ttcgtatgcc agtgaatgcc tgtgcaaaac gtattcctat tcgagggcag gaaccaatgc 3481 catggccacg gccatggccc cggccgtggc cccccaagat gtaacagagc ccagtccgtg 3541 gtcagcggag accgctgcac cctatcaggg taatgccgct gcagattgga cccaggagaa 3601 acaggcaaat ggccgcaaaa gccccgaagc cccgaagagc cccgattgga tgggcatgga 3661 ggaggagcag cagcagcagc cgcagcagcc gcagcagcaa cagctgcaac agcagcagcc 3721 gccttcagtt gcaacgcagg atgatactca gtttgatgag aatcccgtgg aatgggtgga 3781 ggagcagcgt gagccagcgg ctgcagctgc agctgacaat tatgctgagc agccagcctt 3841 tgctgggcag cgagaactgt gccaccagga ttgtccttat tggaggactg tgcatgagga 3901 ggagagactg caacagcagc agcaacagca gcagcaacag cagcaccttc agctgcaaca 3961 gcagcagcca cagttctatt cacaggaggg cggctatgat caggacgatg aggagcgacc 4021 cacaacgagc aagcatctga aaaggctgtc gcgctcatac agactacgac cgccatgcgg 4081 tgggccactg cgttggattg ccaatggatt caccagctcc aaacggagct ccctctcgga 4141 cagcgctccc ttcgagcggg gaagagaacg ggcaccacca gcagcagcaa cagcagcagc 4201 agcggcagca gttgtcaaaa agcagaggcc acgaccaccc atagagaggg gacgtcgcta 4261 ctacacggaa acgcagccca aaatgtggta cgatcagtgt ggcgggctgg atgggatgag 4321 cagcagcatt cggtcgagcc actcgcgctg ctcgatacgt gccctcagct ccaacgcgga 4381 aaccgttgag tgtccctgcc cgccgttacc gtcaatcaaa agtgagaatg tgaagccaga 4441 tagatggggc atgcagcagc cacaatttca gcagcagcag cggcagccac agttccaaca 4501 gcaacagcag cagccacagt tccagcagca gcagacaccg agggtgactc ctctgatgca 4561 gccacggcag acacagatgc agcctcagat gcagcctcag ctgcagcctc agatgcagcc 4621 taagctgcag cctcagatgc agcctcaaat gcagcctcag atgcagccac agatgccgcc 4681 acatcatatg cagatgcagc cacggccaat acagccacag ccacagccac agatgcaaat 4741 gcaaatgcag cacgcgatgg agtaccaaaa tcccaaccag aaccagaacc agaaccacat 4801 cgaacagaat cgctataggc actacgagca gcagcagcag cagcagcagc agcaagcggc 4861 tgcttacaat ccgatgctgt cgatggctac tgctgctagt ccactcaact ttcccattgg 4921 ctcgggcttt gggcccagca agaagatacc caaactgttg agcaatcagc cgctggagct 4981 gaagccatcg ctcgcccaga agctggaggc caagaagccc aaatggatgc accacaatca 5041 cgcaccgctg acgctgcgca ccgcccgacc gcgggcagag gcctactacg agggcaagat 5101 gcgacggcgt tgcctcaagt tcatgttgag catcgagcaa ggcagacagc cagcaatacc 5161 accagcacag gcgcctgccg agcaggagga ctggtccatc accgagcagc agcagcagca 5221 gcagcatcag catcagcagc agcacgaaag tgagccatcc gaggagctgc aagaggaaga 5281 ggaacaacca caagaacgcg tggggcagca ggaagagcag gagccattga acgactcatc 5341 ggaggaacaa gtttggtttg gagagcccgg ctacgacgtc gatgagggtc cgcaatggag 5401 ccaaacgcgt cgctcgctct ccggcagcgt ggtgatgcgt cctgcaaaca atgcggccac 5461 gcggatcgaa catccaacgc atcaatggcc gtattcaggt cagtcgcagc ggcatgacga 5521 gcgcccgagt cagccgagtc ccacatacga tccctactat cgtgtggacg cggaccactg 5581 gccgccagaa cagcaagccg cccattggga gacgcctcct taccacccga agcagcaatc 5641 gccacagcag cagcagcagc aacagccgcc actcaatcag aattatcagg agccacagtc 5701 tcagcgacag acttcacgcc ggccacaggc gcagccgcag ccacagccac agccgcagcc 5761 acagcggcaa gcacagccgc agccacagaa actgccccag cggcagccac agactgagcg 5821 gcagccacag cgccaggagc agccacagcg ccaggagcag ccacagcgcc aatcacagcg 5881 ccagccacgg catgagcagc agcagccaca gcctgaacgc cagcaagatc ctcatcttca 5941 tgcccatccc ccccatcccc atgcccatgc ccatcgtcag cctcagcctc agcctcatgt 6001 tcagcgccag acgccgcttc cgcccccgcc acagccggac attaatgcca gatggcattg 6061 gcgtataccg agatctgtgt cagagaccag acccttctac gacgaggagg aggagcaaga 6121 ctatgccccg caagaggagc gacagccaac caattggcag aagcatgcac cgccgccgtc 6181 gtacatgcag ccaatgcatc accacggcgt ggcacgttat tctgctgact ctggccgggc 6241 ggctgcaagc cgtagtcccc cccgtcgagc cagcagacac cgggcgccgc agcggcaggg 6301 cggtggtgcg gccggtgcca tcaccgcagc cgcactggga ctgaggggcc tggtccaagc 6361 tctgggcggg cccagatatg cgagaaacct ctcgacggtt tccggcgagt ccgcagaggg 6421 gggaggcgac catggcaatg ccctcgattg cggccagcct cagcccatgg acttctcaag 6481 ggagcagctt cagttcacgg tggaaccggc aacagcggta catcgcggcg caccgctcgg 6541 cgccacggag cagacagcac caggggcagt ccgcagctat ggctgtgcgt tgggcagaga 6601 gcagcgggcc cggacatacg ctgtgcagaa aagaccttcg gcatttctgg cccgctccag 6661 ccgggtcaat ggctactcca agccgccatc cacggacaac gagcggagct ctcccctgtc 6721 gctgttcgcc gtgcccacat ccagcagcaa tctggcgtgg cgagccgaga cgagagccgc 6781 cagaacgata acgagcacgc gaatcccagg cggtcaggag gagcagccac gcatgccgcc 6841 tccagtctcg attctctccg atctggactt tcacacacat tccacatcac acaacagcat 6901 ctgctcgaca tcgggcggct atcgggcgcc gttaccgtct ctggcactgt ccgaggatgg 6961 cacttcgtcc ctggccgtat tcctggacaa tcttcgagcc agaaatgtac tgctgctgcc 7021 cggtaagccc agccctctgg cggagttacc gcccagcgga agtgcagcaa agtgcagcgg 7081 aaagcagcat cagcagcagc aggaggagga ggaggaggag gaggaggaga aggagaaggt 7141 ggaacccacg caaggacgtc gctggtttcc agctacaccg ctggtcatcc cgcccaccta 7201 caatgccctg ctggaggagc aggtacttca ggaatatctg cccacgccca aatgcagacg 7261 cttcaagact tgaatgttcc aacgatccca cagcagcaat caatcctcca agtagccata 7321 gcccggatag ctcagcgttt cacatcaaga accaataaat agctcagaat ttcccttaaa