PREDICTED: Drosophila obscura homeotic protein female sterile
LOCUS XM_041591945 3725 bp mRNA linear INV 14-MAY-2021
(LOC111072429), transcript variant X5, mRNA.
ACCESSION XM_041591945
VERSION XM_041591945.1
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..3725
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..3725
/gene="LOC111072429"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 9 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 15 samples with support for all annotated
introns"
/db_xref="GeneID:111072429"
CDS 170..3478
/gene="LOC111072429"
/codon_start=1
/product="homeotic protein female sterile isoform X5"
/protein_id="XP_041447879.1"
/db_xref="GeneID:111072429"
/translation="MSSNEPPPRYEPPVEPVNGIVQPAVVPPVDRPGRNTNQLQFLIK
TVMKMIWKHHFAWPFQQPVDAKKLNLPDYHKIIKQPMDMGTIKKRLENNYYWSAKETI
HDFNTMFNNCYVYNKPGEDVVVMAQTLEKVFLQKIETMPKEELELEPATAKGGKKKAR
APATPKSGSGGGGGTGSSTGAAVANSNTGSSNSGSINKVAPSAQQLPIMGSGLAAQST
GAGGHGSATGSGTTSRPVSAMGGTVSSTAGGGGAPSIPPISTMPPHTVPGSTNTTTTA
TTMVDAIIASLRNPSQAAYPGATQAAANSSSLLDGSSSAAASAAATTAAATAAAAAAA
AAAAAAAAASSSGGGAGAPGTVSTAGGVTIPSVNTTTNVHSSYVNSTAGVGVGVDAVI
PPQQPAKMKKGVKRKADTTTPTANAFESPYAQMDSKSAKIATRRESNRQGSGYAMSPS
MGVVPGLAAGVAASVAAAKSKEKLSDALKSCNEILKELFSKKHSGYAWPFYKPVDAEM
LGLHDYHDIIKKPMDLGTVKRKMDNREYKSAPEFAADVRLIFTNCYKYNPPDHDVVAM
GRKLQDVFEMRYANIPDEPVSNAAHHHAHTHGHGHGHGHGQSHGHGHGHGHGGYSSAS
LKHDGSDSSSEDSSGTENESNSDEERSAKLKMLESKLLGLQEEIRKLSEEASAKKKAK
KKLKEKKKSIGGGSGSGSASHHAHASAGGGAGGPSASHGGVSVPASVVALSAGGAAGP
NLSALLSGSLVGASGAGGGVPNVSALHSLAHDMTLAMNQLTGNAAATGAGFTAGIPPP
GPAPGGKGANMASAMAAAGAGPGASGGTGGSSKSKSKGQRGKGSSSNAGAGGASSGVT
VNAGSGIGGAGAASSAGSGGGSGTTGPSGNSSKRGKGSSSAGGGGGGSSGSAANTTSA
TGAGARGSSKKKPSQVMNFDSEEEDTAKPMSYDEKRQLSLDINKLPGDKLGRVVHIIQ
NREPSLRDSNPDEIEIDFETLKPSTLRELESYVASCLRKKTRKPCYKKPSGKSKDEQM
AEKKQELEKRLQDVTGQLGASKKNAKKDDSTSNKVEAVQPANPVSSSSSSSDSSSSSS
SDSSSSDSSDSEAG"
misc_feature 269..589
/gene="LOC111072429"
/note="Bromodomain, Brdt_like subfamily, repeat I. Human
Brdt is a testis-specific member of the BET subfamily of
bromodomain proteins; the first bromodomain in Brdt has
been shown to be essential for male germ cell
differentiation. Bromodomains are 110 amino...; Region:
Bromo_Brdt_I_like; cd05497"
/db_xref="CDD:99929"
misc_feature order(356..358,377..379,386..388,503..505,515..517,
533..535)
/gene="LOC111072429"
/note="acetyllysine binding site [active]"
/db_xref="CDD:99929"
misc_feature 1601..1903
/gene="LOC111072429"
/note="Bromodomain, Brdt_like subfamily, repeat II. Human
Brdt is a testis-specific member of the BET subfamily of
bromodomain proteins; the first bromodomain in Brdt has
been shown to be essential for male germ cell
differentiation. Bromodomains are 110 amino...; Region:
Bromo_Brdt_II_like; cd05498"
/db_xref="CDD:99930"
misc_feature order(1679..1681,1700..1702,1709..1711,1826..1828,
1838..1840,1856..1858)
/gene="LOC111072429"
/note="acetyllysine binding site [active]"
/db_xref="CDD:99930"
misc_feature 2996..3190
/gene="LOC111072429"
/note="Bromodomain extra-terminal - transcription
regulation; Region: BET; pfam17035"
/db_xref="CDD:435704"
ORIGIN
1 agcagcagca gcagtacaac cagcatccac ttgaggatca gataccttaa aagcaaccgc
61 aacaggagca gggacaaaag caacaaccag aagcctcatc atcagccaac aggaggagca
121 gcagtagccg cagcaccact gtgtcaccat catcaccatc atcaacaaca tgtcgtccaa
181 cgaaccacca cctcgctacg agccgcctgt ggagccggtc aatggcattg tgcagccagc
241 ggttgtgcct ccagttgatc gacccggccg caatacaaat caattgcaat tcttgatcaa
301 aaccgtaatg aagatgatat ggaaacacca ttttgcgtgg cccttccagc agcccgtcga
361 cgcgaaaaag ctcaacctgc ccgactacca caagatcatc aagcagccga tggacatggg
421 aacgatcaag aagcgactgg agaacaacta ttactggtcg gcgaaggaga ccatccatga
481 cttcaatacc atgttcaaca actgctatgt ctacaacaag cccggcgagg atgtggtcgt
541 gatggcccag acgctggaga aggtattctt gcagaagatc gagacgatgc ccaaggagga
601 gcttgaactg gagccggcca cggccaaggg tggcaagaag aaggcacgtg ccccggccac
661 gcccaagtct ggatcaggag gcggaggtgg aacgggatca agcacgggtg cagctgtcgc
721 caatagcaac actggcagca gtaacagcgg atctatcaat aaggtagcac catcggccca
781 acagttgccc atcatgggca gcggcctggc ggcacagtca acgggtgcag gaggccatgg
841 atcagcgacg gggtcgggga caacatcccg acccgtatca gcgatgggcg gaacggtttc
901 atcgacggcc ggcggcggcg gtgcaccgtc cataccaccg attagcacaa tgcctccgca
961 cacagtcccc ggcagcacca acaccacgac gacggccacg acaatggtcg acgccattat
1021 agccagcctt cggaatccca gccaggccgc atatccgggc gctacccagg cggcggctaa
1081 cagctcctcc ctactggacg gcagcagcag tgcggcagca tcggcggcgg caacaacagc
1141 agcggcgacg gcagcagcag cggcagcagc agcagcagcg gcggcggcag cagcagcatc
1201 atcatctggc ggtggagcgg gagctcccgg tacagtcagt acggcgggtg gtgtgacaat
1261 accatccgtc aataccacca ccaatgtgca ctcctcctac gtgaacagca cggcgggcgt
1321 cggagttggt gtggatgcgg ttataccgcc ccaacagccg gcgaaaatga agaagggtgt
1381 caaacggaag gcggacacaa cgacgccgac ggccaatgca tttgagtcgc cctacgccca
1441 aatggactcc aagtcggcca agatagcgac gcgaagggaa tcgaatcgtc agggctcggg
1501 atatgcgatg tcgccatcga tgggtgtcgt gcctggattg gcggcgggtg tggccgctag
1561 tgtggcggcg gccaagtcaa aggagaagct gtcggatgca ctaaagtcat gcaacgagat
1621 cctcaaggag ctgttcagca agaagcactc gggctatgcc tggcccttct acaagccggt
1681 ggatgcggaa atgctgggcc tccatgacta ccacgacatc atcaaaaagc ccatggacct
1741 gggcaccgtc aagcggaaaa tggacaatcg ggagtacaag agcgcaccgg agtttgcggc
1801 cgatgtgcga ttaatattca ccaactgcta caagtacaat ccgccagatc atgatgttgt
1861 ggccatgggc cggaagctgc aagacgtctt cgaaatgcgc tacgccaaca tacccgacga
1921 accggtctct aatgcggccc atcatcatgc acatacgcac ggacatgggc acggccatgg
1981 acacggccag agtcacggtc acgggcatgg gcatgggcac ggtggctatt cgagtgcttc
2041 cctcaagcac gatggcagcg actcgtccag cgaggactcc agcggcacag agaacgagtc
2101 gaactcggac gaggagcgca gcgccaagct gaaaatgctc gagtccaagc tgctcggtct
2161 ccaggaggag atccgaaagc tctccgagga ggcctccgca aagaagaagg ccaagaaaaa
2221 actcaaagag aagaagaaga gcatcggtgg gggctctggt tccggctcgg cctctcatca
2281 tgcccatgcc tcggctggtg gtggcgcagg tggtccgtcc gccagccatg gtggcgtctc
2341 tgttccggcc agcgtcgttg ccctatcggc gggcggagca gcgggaccca acctatcggc
2401 cttactcagc ggttcgctgg tgggcgcgag cggagcgggc ggcggagtgc ccaacgtctc
2461 ggcccttcat tcactcgccc acgacatgac ccttgccatg aaccaactga cgggcaatgc
2521 ggcagcgacc ggagctggct ttacggccgg cataccgcca ccgggaccag cgccaggcgg
2581 caagggggcc aacatggcca gcgccatggc tgcggcggga gcgggaccag gggcttctgg
2641 gggaaccggc ggcagcagca aatcgaagag caagggccag cgcggtaaag gaagctcgag
2701 caatgcggga gcgggcggag catcctctgg agtgacggtc aacgcgggca gcggaatcgg
2761 cggtgctggc gcagcgtcca gcgctggcag tggcggtggc agtgggacta ctggccccag
2821 cggcaattcc tcaaagcggg gcaagggtag tagtagtgcc ggcggtggtg gtggcggcag
2881 cagtggcagt gcggccaata ccaccagtgc gaccggtgcc ggagcgcgcg gtagcagcaa
2941 gaagaagccc agccaggtga tgaactttga ctccgaggag gaggacacgg ccaagcccat
3001 gtcgtacgat gagaagcgac aactctcact ggacatcaac aagttgccag gcgacaagct
3061 ggggcgagtg gtgcacatta tccagaatcg ggagccatcg ctgcgggact ccaatccgga
3121 cgagatagag atcgactttg agacgctgaa gccgtcgacg ctgcgcgagc ttgaaagcta
3181 tgtggcgtcg tgtttgcgca aaaaaacacg taagccatgt tataaaaagc cttccggcaa
3241 atcgaaggat gagcaaatgg cggaaaagaa gcaggagctg gagaagcggc tgcaggacgt
3301 caccggccag ctgggtgcaa gcaagaaaaa cgccaagaaa gatgattcca cctcaaacaa
3361 agtggaagct gtgcagccag cgaatcccgt gtcgtcgagt tccagttcca gcgattcatc
3421 gtcctcgagt tcgagtgata gcagttcgag tgactcgagc gacagtgaag caggttagga
3481 cgcgttttgt ttgtttgttt taccttataa cgcctttttt ttttgttagt ttatatagac
3541 atatatacgt atgcatatat atatatatat atatatatat atataaatat gaatatatat
3601 gtatagaaac gtttttaagc agcaaataac aaaatcgaac agatcgacga cagtaaccga
3661 cagtaactta cagcttacga aactaaaagc gtgcggtaga ggaagaggaa tagcaaagca
3721 ggtag