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LOCUS XM_041591944 3740 bp mRNA linear INV 14-MAY-2021 (LOC111072429), transcript variant X4, mRNA. ACCESSION XM_041591944 VERSION XM_041591944.1 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3740 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..3740 /gene="LOC111072429" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns" /db_xref="GeneID:111072429" CDS 170..3493 /gene="LOC111072429" /codon_start=1 /product="homeotic protein female sterile isoform X4" /protein_id="XP_041447878.1" /db_xref="GeneID:111072429" /translation="MSSNEPPPRYEPPVEPVNGIVQPAVVPPVDRPGRNTNQLQFLIK TVMKMIWKHHFAWPFQQPVDAKKLNLPDYHKIIKQPMDMGTIKKRLENNYYWSAKETI HDFNTMFNNCYVYNKPGEDVVVMAQTLEKVFLQKIETMPKEELELEPATAKGGKKKAR APATPKSGSGGGGGTGSSTGAAVANSNTGSSNSGSINKVAPSAQQLPIMGSGLAAQST GAGGHGSATGSGTTSRPVSAMGGTVSSTAGGGGAPSIPPISTMPPHTVPGSTNTTTTA TTMVDAIIASLRNPSQAAYPGATQAAANSSSLLDGSSSAAASAAATTAAATAAAAAAA AAAAAAAAASSSGGGAGAPGTVSTAGGVTIPSVNTTTNVHSSYVNSTAGVGVGVDAVI PPQQPAKMKKGVKRKADTTTPTANAFESPYAQMDSKSAKIATRRESNRQDLTFQGSGY AMSPSMGVVPGLAAGVAASVAAAKSKEKLSDALKSCNEILKELFSKKHSGYAWPFYKP VDAEMLGLHDYHDIIKKPMDLGTVKRKMDNREYKSAPEFAADVRLIFTNCYKYNPPDH DVVAMGRKLQDVFEMRYANIPDEPVSNAAHHHAHTHGHGHGHGHGQSHGHGHGHGHGG YSSASLKHDGSDSSSEDSSGTENESNSDEERSAKLKMLESKLLGLQEEIRKLSEEASA KKKAKKKLKEKKKSIGGGSGSGSASHHAHASAGGGAGGPSASHGGVSVPASVVALSAG GAAGPNLSALLSGSLVGASGAGGGVPNVSALHSLAHDMTLAMNQLTGNAAATGAGFTA GIPPPGPAPGGKGANMASAMAAAGAGPGASGGTGGSSKSKSKGQRGKGSSSNAGAGGA SSGVTVNAGSGIGGAGAASSAGSGGGSGTTGPSGNSSKRGKGSSSAGGGGGGSSGSAA NTTSATGAGARGSSKKKPSQVMNFDSEEEDTAKPMSYDEKRQLSLDINKLPGDKLGRV VHIIQNREPSLRDSNPDEIEIDFETLKPSTLRELESYVASCLRKKTRKPCYKKPSGKS KDEQMAEKKQELEKRLQDVTGQLGASKKNAKKDDSTSNKVEAVQPANPVSSSSSSSDS SSSSSSDSSSSDSSDSEAG" misc_feature 269..589 /gene="LOC111072429" /note="Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino...; Region: Bromo_Brdt_I_like; cd05497" /db_xref="CDD:99929" misc_feature order(356..358,377..379,386..388,503..505,515..517, 533..535) /gene="LOC111072429" /note="acetyllysine binding site [active]" /db_xref="CDD:99929" misc_feature 1616..1918 /gene="LOC111072429" /note="Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino...; Region: Bromo_Brdt_II_like; cd05498" /db_xref="CDD:99930" misc_feature order(1694..1696,1715..1717,1724..1726,1841..1843, 1853..1855,1871..1873) /gene="LOC111072429" /note="acetyllysine binding site [active]" /db_xref="CDD:99930" misc_feature 3011..3205 /gene="LOC111072429" /note="Bromodomain extra-terminal - transcription regulation; Region: BET; pfam17035" /db_xref="CDD:435704" ORIGIN 1 agcagcagca gcagtacaac cagcatccac ttgaggatca gataccttaa aagcaaccgc 61 aacaggagca gggacaaaag caacaaccag aagcctcatc atcagccaac aggaggagca 121 gcagtagccg cagcaccact gtgtcaccat catcaccatc atcaacaaca tgtcgtccaa 181 cgaaccacca cctcgctacg agccgcctgt ggagccggtc aatggcattg tgcagccagc 241 ggttgtgcct ccagttgatc gacccggccg caatacaaat caattgcaat tcttgatcaa 301 aaccgtaatg aagatgatat ggaaacacca ttttgcgtgg cccttccagc agcccgtcga 361 cgcgaaaaag ctcaacctgc ccgactacca caagatcatc aagcagccga tggacatggg 421 aacgatcaag aagcgactgg agaacaacta ttactggtcg gcgaaggaga ccatccatga 481 cttcaatacc atgttcaaca actgctatgt ctacaacaag cccggcgagg atgtggtcgt 541 gatggcccag acgctggaga aggtattctt gcagaagatc gagacgatgc ccaaggagga 601 gcttgaactg gagccggcca cggccaaggg tggcaagaag aaggcacgtg ccccggccac 661 gcccaagtct ggatcaggag gcggaggtgg aacgggatca agcacgggtg cagctgtcgc 721 caatagcaac actggcagca gtaacagcgg atctatcaat aaggtagcac catcggccca 781 acagttgccc atcatgggca gcggcctggc ggcacagtca acgggtgcag gaggccatgg 841 atcagcgacg gggtcgggga caacatcccg acccgtatca gcgatgggcg gaacggtttc 901 atcgacggcc ggcggcggcg gtgcaccgtc cataccaccg attagcacaa tgcctccgca 961 cacagtcccc ggcagcacca acaccacgac gacggccacg acaatggtcg acgccattat 1021 agccagcctt cggaatccca gccaggccgc atatccgggc gctacccagg cggcggctaa 1081 cagctcctcc ctactggacg gcagcagcag tgcggcagca tcggcggcgg caacaacagc 1141 agcggcgacg gcagcagcag cggcagcagc agcagcagcg gcggcggcag cagcagcatc 1201 atcatctggc ggtggagcgg gagctcccgg tacagtcagt acggcgggtg gtgtgacaat 1261 accatccgtc aataccacca ccaatgtgca ctcctcctac gtgaacagca cggcgggcgt 1321 cggagttggt gtggatgcgg ttataccgcc ccaacagccg gcgaaaatga agaagggtgt 1381 caaacggaag gcggacacaa cgacgccgac ggccaatgca tttgagtcgc cctacgccca 1441 aatggactcc aagtcggcca agatagcgac gcgaagggaa tcgaatcgtc aggatcttac 1501 attccagggc tcgggatatg cgatgtcgcc atcgatgggt gtcgtgcctg gattggcggc 1561 gggtgtggcc gctagtgtgg cggcggccaa gtcaaaggag aagctgtcgg atgcactaaa 1621 gtcatgcaac gagatcctca aggagctgtt cagcaagaag cactcgggct atgcctggcc 1681 cttctacaag ccggtggatg cggaaatgct gggcctccat gactaccacg acatcatcaa 1741 aaagcccatg gacctgggca ccgtcaagcg gaaaatggac aatcgggagt acaagagcgc 1801 accggagttt gcggccgatg tgcgattaat attcaccaac tgctacaagt acaatccgcc 1861 agatcatgat gttgtggcca tgggccggaa gctgcaagac gtcttcgaaa tgcgctacgc 1921 caacataccc gacgaaccgg tctctaatgc ggcccatcat catgcacata cgcacggaca 1981 tgggcacggc catggacacg gccagagtca cggtcacggg catgggcatg ggcacggtgg 2041 ctattcgagt gcttccctca agcacgatgg cagcgactcg tccagcgagg actccagcgg 2101 cacagagaac gagtcgaact cggacgagga gcgcagcgcc aagctgaaaa tgctcgagtc 2161 caagctgctc ggtctccagg aggagatccg aaagctctcc gaggaggcct ccgcaaagaa 2221 gaaggccaag aaaaaactca aagagaagaa gaagagcatc ggtgggggct ctggttccgg 2281 ctcggcctct catcatgccc atgcctcggc tggtggtggc gcaggtggtc cgtccgccag 2341 ccatggtggc gtctctgttc cggccagcgt cgttgcccta tcggcgggcg gagcagcggg 2401 acccaaccta tcggccttac tcagcggttc gctggtgggc gcgagcggag cgggcggcgg 2461 agtgcccaac gtctcggccc ttcattcact cgcccacgac atgacccttg ccatgaacca 2521 actgacgggc aatgcggcag cgaccggagc tggctttacg gccggcatac cgccaccggg 2581 accagcgcca ggcggcaagg gggccaacat ggccagcgcc atggctgcgg cgggagcggg 2641 accaggggct tctgggggaa ccggcggcag cagcaaatcg aagagcaagg gccagcgcgg 2701 taaaggaagc tcgagcaatg cgggagcggg cggagcatcc tctggagtga cggtcaacgc 2761 gggcagcgga atcggcggtg ctggcgcagc gtccagcgct ggcagtggcg gtggcagtgg 2821 gactactggc cccagcggca attcctcaaa gcggggcaag ggtagtagta gtgccggcgg 2881 tggtggtggc ggcagcagtg gcagtgcggc caataccacc agtgcgaccg gtgccggagc 2941 gcgcggtagc agcaagaaga agcccagcca ggtgatgaac tttgactccg aggaggagga 3001 cacggccaag cccatgtcgt acgatgagaa gcgacaactc tcactggaca tcaacaagtt 3061 gccaggcgac aagctggggc gagtggtgca cattatccag aatcgggagc catcgctgcg 3121 ggactccaat ccggacgaga tagagatcga ctttgagacg ctgaagccgt cgacgctgcg 3181 cgagcttgaa agctatgtgg cgtcgtgttt gcgcaaaaaa acacgtaagc catgttataa 3241 aaagccttcc ggcaaatcga aggatgagca aatggcggaa aagaagcagg agctggagaa 3301 gcggctgcag gacgtcaccg gccagctggg tgcaagcaag aaaaacgcca agaaagatga 3361 ttccacctca aacaaagtgg aagctgtgca gccagcgaat cccgtgtcgt cgagttccag 3421 ttccagcgat tcatcgtcct cgagttcgag tgatagcagt tcgagtgact cgagcgacag 3481 tgaagcaggt taggacgcgt tttgtttgtt tgttttacct tataacgcct tttttttttg 3541 ttagtttata tagacatata tacgtatgca tatatatata tatatatata tatatatata 3601 aatatgaata tatatgtata gaaacgtttt taagcagcaa ataacaaaat cgaacagatc 3661 gacgacagta accgacagta acttacagct tacgaaacta aaagcgtgcg gtagaggaag 3721 aggaatagca aagcaggtag