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LOCUS XM_041591943 3755 bp mRNA linear INV 14-MAY-2021 (LOC111072429), transcript variant X3, mRNA. ACCESSION XM_041591943 VERSION XM_041591943.1 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3755 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..3755 /gene="LOC111072429" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns" /db_xref="GeneID:111072429" CDS 170..3508 /gene="LOC111072429" /codon_start=1 /product="homeotic protein female sterile isoform X3" /protein_id="XP_041447877.1" /db_xref="GeneID:111072429" /translation="MSSNEPPPRYEPPVEPVNGIVQPAVVPPVDRPGRNTNQLQFLIK TVMKMIWKHHFAWPFQQPVDAKKLNLPDYHKIIKQPMDMGTIKKRLENNYYWSAKETI HDFNTMFNNCYVYNKPGEDVVVMAQTLEKVFLQKIETMPKEELELEPATAKGGKKKAR APATPKSGSGGGGGTGSSTGAAVANSNTGSSNSGSINKVAPSAQQLPIMGSGLAAQST GAGGHGSATGSGTTSRPVSAMGGTVSSTAGGGGAPSIPPISTMPPHTVPGSTNTTTTA TTMVDAIIASLRNPSQAAYPGATQAAANSSSLLDGSSSAAASAAATTAAATAAAAAAA AAAAAAAAASSSGGGAGAPGTVSTAGGVTIPSVNTTTNVHSSYVNSTAGVGVGVDAVI PPQQPAKMKKGVKRKADTTTPTANAFESPYAQMDSKSAKIATRRESNRQVKGKKDLTF QGSGYAMSPSMGVVPGLAAGVAASVAAAKSKEKLSDALKSCNEILKELFSKKHSGYAW PFYKPVDAEMLGLHDYHDIIKKPMDLGTVKRKMDNREYKSAPEFAADVRLIFTNCYKY NPPDHDVVAMGRKLQDVFEMRYANIPDEPVSNAAHHHAHTHGHGHGHGHGQSHGHGHG HGHGGYSSASLKHDGSDSSSEDSSGTENESNSDEERSAKLKMLESKLLGLQEEIRKLS EEASAKKKAKKKLKEKKKSIGGGSGSGSASHHAHASAGGGAGGPSASHGGVSVPASVV ALSAGGAAGPNLSALLSGSLVGASGAGGGVPNVSALHSLAHDMTLAMNQLTGNAAATG AGFTAGIPPPGPAPGGKGANMASAMAAAGAGPGASGGTGGSSKSKSKGQRGKGSSSNA GAGGASSGVTVNAGSGIGGAGAASSAGSGGGSGTTGPSGNSSKRGKGSSSAGGGGGGS SGSAANTTSATGAGARGSSKKKPSQVMNFDSEEEDTAKPMSYDEKRQLSLDINKLPGD KLGRVVHIIQNREPSLRDSNPDEIEIDFETLKPSTLRELESYVASCLRKKTRKPCYKK PSGKSKDEQMAEKKQELEKRLQDVTGQLGASKKNAKKDDSTSNKVEAVQPANPVSSSS SSSDSSSSSSSDSSSSDSSDSEAG" misc_feature 269..589 /gene="LOC111072429" /note="Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino...; Region: Bromo_Brdt_I_like; cd05497" /db_xref="CDD:99929" misc_feature order(356..358,377..379,386..388,503..505,515..517, 533..535) /gene="LOC111072429" /note="acetyllysine binding site [active]" /db_xref="CDD:99929" misc_feature 1631..1933 /gene="LOC111072429" /note="Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino...; Region: Bromo_Brdt_II_like; cd05498" /db_xref="CDD:99930" misc_feature order(1709..1711,1730..1732,1739..1741,1856..1858, 1868..1870,1886..1888) /gene="LOC111072429" /note="acetyllysine binding site [active]" /db_xref="CDD:99930" misc_feature 3026..3220 /gene="LOC111072429" /note="Bromodomain extra-terminal - transcription regulation; Region: BET; pfam17035" /db_xref="CDD:435704" ORIGIN 1 agcagcagca gcagtacaac cagcatccac ttgaggatca gataccttaa aagcaaccgc 61 aacaggagca gggacaaaag caacaaccag aagcctcatc atcagccaac aggaggagca 121 gcagtagccg cagcaccact gtgtcaccat catcaccatc atcaacaaca tgtcgtccaa 181 cgaaccacca cctcgctacg agccgcctgt ggagccggtc aatggcattg tgcagccagc 241 ggttgtgcct ccagttgatc gacccggccg caatacaaat caattgcaat tcttgatcaa 301 aaccgtaatg aagatgatat ggaaacacca ttttgcgtgg cccttccagc agcccgtcga 361 cgcgaaaaag ctcaacctgc ccgactacca caagatcatc aagcagccga tggacatggg 421 aacgatcaag aagcgactgg agaacaacta ttactggtcg gcgaaggaga ccatccatga 481 cttcaatacc atgttcaaca actgctatgt ctacaacaag cccggcgagg atgtggtcgt 541 gatggcccag acgctggaga aggtattctt gcagaagatc gagacgatgc ccaaggagga 601 gcttgaactg gagccggcca cggccaaggg tggcaagaag aaggcacgtg ccccggccac 661 gcccaagtct ggatcaggag gcggaggtgg aacgggatca agcacgggtg cagctgtcgc 721 caatagcaac actggcagca gtaacagcgg atctatcaat aaggtagcac catcggccca 781 acagttgccc atcatgggca gcggcctggc ggcacagtca acgggtgcag gaggccatgg 841 atcagcgacg gggtcgggga caacatcccg acccgtatca gcgatgggcg gaacggtttc 901 atcgacggcc ggcggcggcg gtgcaccgtc cataccaccg attagcacaa tgcctccgca 961 cacagtcccc ggcagcacca acaccacgac gacggccacg acaatggtcg acgccattat 1021 agccagcctt cggaatccca gccaggccgc atatccgggc gctacccagg cggcggctaa 1081 cagctcctcc ctactggacg gcagcagcag tgcggcagca tcggcggcgg caacaacagc 1141 agcggcgacg gcagcagcag cggcagcagc agcagcagcg gcggcggcag cagcagcatc 1201 atcatctggc ggtggagcgg gagctcccgg tacagtcagt acggcgggtg gtgtgacaat 1261 accatccgtc aataccacca ccaatgtgca ctcctcctac gtgaacagca cggcgggcgt 1321 cggagttggt gtggatgcgg ttataccgcc ccaacagccg gcgaaaatga agaagggtgt 1381 caaacggaag gcggacacaa cgacgccgac ggccaatgca tttgagtcgc cctacgccca 1441 aatggactcc aagtcggcca agatagcgac gcgaagggaa tcgaatcgtc aggtaaaggg 1501 caaaaaggat cttacattcc agggctcggg atatgcgatg tcgccatcga tgggtgtcgt 1561 gcctggattg gcggcgggtg tggccgctag tgtggcggcg gccaagtcaa aggagaagct 1621 gtcggatgca ctaaagtcat gcaacgagat cctcaaggag ctgttcagca agaagcactc 1681 gggctatgcc tggcccttct acaagccggt ggatgcggaa atgctgggcc tccatgacta 1741 ccacgacatc atcaaaaagc ccatggacct gggcaccgtc aagcggaaaa tggacaatcg 1801 ggagtacaag agcgcaccgg agtttgcggc cgatgtgcga ttaatattca ccaactgcta 1861 caagtacaat ccgccagatc atgatgttgt ggccatgggc cggaagctgc aagacgtctt 1921 cgaaatgcgc tacgccaaca tacccgacga accggtctct aatgcggccc atcatcatgc 1981 acatacgcac ggacatgggc acggccatgg acacggccag agtcacggtc acgggcatgg 2041 gcatgggcac ggtggctatt cgagtgcttc cctcaagcac gatggcagcg actcgtccag 2101 cgaggactcc agcggcacag agaacgagtc gaactcggac gaggagcgca gcgccaagct 2161 gaaaatgctc gagtccaagc tgctcggtct ccaggaggag atccgaaagc tctccgagga 2221 ggcctccgca aagaagaagg ccaagaaaaa actcaaagag aagaagaaga gcatcggtgg 2281 gggctctggt tccggctcgg cctctcatca tgcccatgcc tcggctggtg gtggcgcagg 2341 tggtccgtcc gccagccatg gtggcgtctc tgttccggcc agcgtcgttg ccctatcggc 2401 gggcggagca gcgggaccca acctatcggc cttactcagc ggttcgctgg tgggcgcgag 2461 cggagcgggc ggcggagtgc ccaacgtctc ggcccttcat tcactcgccc acgacatgac 2521 ccttgccatg aaccaactga cgggcaatgc ggcagcgacc ggagctggct ttacggccgg 2581 cataccgcca ccgggaccag cgccaggcgg caagggggcc aacatggcca gcgccatggc 2641 tgcggcggga gcgggaccag gggcttctgg gggaaccggc ggcagcagca aatcgaagag 2701 caagggccag cgcggtaaag gaagctcgag caatgcggga gcgggcggag catcctctgg 2761 agtgacggtc aacgcgggca gcggaatcgg cggtgctggc gcagcgtcca gcgctggcag 2821 tggcggtggc agtgggacta ctggccccag cggcaattcc tcaaagcggg gcaagggtag 2881 tagtagtgcc ggcggtggtg gtggcggcag cagtggcagt gcggccaata ccaccagtgc 2941 gaccggtgcc ggagcgcgcg gtagcagcaa gaagaagccc agccaggtga tgaactttga 3001 ctccgaggag gaggacacgg ccaagcccat gtcgtacgat gagaagcgac aactctcact 3061 ggacatcaac aagttgccag gcgacaagct ggggcgagtg gtgcacatta tccagaatcg 3121 ggagccatcg ctgcgggact ccaatccgga cgagatagag atcgactttg agacgctgaa 3181 gccgtcgacg ctgcgcgagc ttgaaagcta tgtggcgtcg tgtttgcgca aaaaaacacg 3241 taagccatgt tataaaaagc cttccggcaa atcgaaggat gagcaaatgg cggaaaagaa 3301 gcaggagctg gagaagcggc tgcaggacgt caccggccag ctgggtgcaa gcaagaaaaa 3361 cgccaagaaa gatgattcca cctcaaacaa agtggaagct gtgcagccag cgaatcccgt 3421 gtcgtcgagt tccagttcca gcgattcatc gtcctcgagt tcgagtgata gcagttcgag 3481 tgactcgagc gacagtgaag caggttagga cgcgttttgt ttgtttgttt taccttataa 3541 cgcctttttt ttttgttagt ttatatagac atatatacgt atgcatatat atatatatat 3601 atatatatat atataaatat gaatatatat gtatagaaac gtttttaagc agcaaataac 3661 aaaatcgaac agatcgacga cagtaaccga cagtaactta cagcttacga aactaaaagc 3721 gtgcggtaga ggaagaggaa tagcaaagca ggtag