PREDICTED: Drosophila obscura homeotic protein female sterile
LOCUS XM_041591943 3755 bp mRNA linear INV 14-MAY-2021
(LOC111072429), transcript variant X3, mRNA.
ACCESSION XM_041591943
VERSION XM_041591943.1
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..3755
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..3755
/gene="LOC111072429"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 8 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 17 samples with support for all annotated
introns"
/db_xref="GeneID:111072429"
CDS 170..3508
/gene="LOC111072429"
/codon_start=1
/product="homeotic protein female sterile isoform X3"
/protein_id="XP_041447877.1"
/db_xref="GeneID:111072429"
/translation="MSSNEPPPRYEPPVEPVNGIVQPAVVPPVDRPGRNTNQLQFLIK
TVMKMIWKHHFAWPFQQPVDAKKLNLPDYHKIIKQPMDMGTIKKRLENNYYWSAKETI
HDFNTMFNNCYVYNKPGEDVVVMAQTLEKVFLQKIETMPKEELELEPATAKGGKKKAR
APATPKSGSGGGGGTGSSTGAAVANSNTGSSNSGSINKVAPSAQQLPIMGSGLAAQST
GAGGHGSATGSGTTSRPVSAMGGTVSSTAGGGGAPSIPPISTMPPHTVPGSTNTTTTA
TTMVDAIIASLRNPSQAAYPGATQAAANSSSLLDGSSSAAASAAATTAAATAAAAAAA
AAAAAAAAASSSGGGAGAPGTVSTAGGVTIPSVNTTTNVHSSYVNSTAGVGVGVDAVI
PPQQPAKMKKGVKRKADTTTPTANAFESPYAQMDSKSAKIATRRESNRQVKGKKDLTF
QGSGYAMSPSMGVVPGLAAGVAASVAAAKSKEKLSDALKSCNEILKELFSKKHSGYAW
PFYKPVDAEMLGLHDYHDIIKKPMDLGTVKRKMDNREYKSAPEFAADVRLIFTNCYKY
NPPDHDVVAMGRKLQDVFEMRYANIPDEPVSNAAHHHAHTHGHGHGHGHGQSHGHGHG
HGHGGYSSASLKHDGSDSSSEDSSGTENESNSDEERSAKLKMLESKLLGLQEEIRKLS
EEASAKKKAKKKLKEKKKSIGGGSGSGSASHHAHASAGGGAGGPSASHGGVSVPASVV
ALSAGGAAGPNLSALLSGSLVGASGAGGGVPNVSALHSLAHDMTLAMNQLTGNAAATG
AGFTAGIPPPGPAPGGKGANMASAMAAAGAGPGASGGTGGSSKSKSKGQRGKGSSSNA
GAGGASSGVTVNAGSGIGGAGAASSAGSGGGSGTTGPSGNSSKRGKGSSSAGGGGGGS
SGSAANTTSATGAGARGSSKKKPSQVMNFDSEEEDTAKPMSYDEKRQLSLDINKLPGD
KLGRVVHIIQNREPSLRDSNPDEIEIDFETLKPSTLRELESYVASCLRKKTRKPCYKK
PSGKSKDEQMAEKKQELEKRLQDVTGQLGASKKNAKKDDSTSNKVEAVQPANPVSSSS
SSSDSSSSSSSDSSSSDSSDSEAG"
misc_feature 269..589
/gene="LOC111072429"
/note="Bromodomain, Brdt_like subfamily, repeat I. Human
Brdt is a testis-specific member of the BET subfamily of
bromodomain proteins; the first bromodomain in Brdt has
been shown to be essential for male germ cell
differentiation. Bromodomains are 110 amino...; Region:
Bromo_Brdt_I_like; cd05497"
/db_xref="CDD:99929"
misc_feature order(356..358,377..379,386..388,503..505,515..517,
533..535)
/gene="LOC111072429"
/note="acetyllysine binding site [active]"
/db_xref="CDD:99929"
misc_feature 1631..1933
/gene="LOC111072429"
/note="Bromodomain, Brdt_like subfamily, repeat II. Human
Brdt is a testis-specific member of the BET subfamily of
bromodomain proteins; the first bromodomain in Brdt has
been shown to be essential for male germ cell
differentiation. Bromodomains are 110 amino...; Region:
Bromo_Brdt_II_like; cd05498"
/db_xref="CDD:99930"
misc_feature order(1709..1711,1730..1732,1739..1741,1856..1858,
1868..1870,1886..1888)
/gene="LOC111072429"
/note="acetyllysine binding site [active]"
/db_xref="CDD:99930"
misc_feature 3026..3220
/gene="LOC111072429"
/note="Bromodomain extra-terminal - transcription
regulation; Region: BET; pfam17035"
/db_xref="CDD:435704"
ORIGIN
1 agcagcagca gcagtacaac cagcatccac ttgaggatca gataccttaa aagcaaccgc
61 aacaggagca gggacaaaag caacaaccag aagcctcatc atcagccaac aggaggagca
121 gcagtagccg cagcaccact gtgtcaccat catcaccatc atcaacaaca tgtcgtccaa
181 cgaaccacca cctcgctacg agccgcctgt ggagccggtc aatggcattg tgcagccagc
241 ggttgtgcct ccagttgatc gacccggccg caatacaaat caattgcaat tcttgatcaa
301 aaccgtaatg aagatgatat ggaaacacca ttttgcgtgg cccttccagc agcccgtcga
361 cgcgaaaaag ctcaacctgc ccgactacca caagatcatc aagcagccga tggacatggg
421 aacgatcaag aagcgactgg agaacaacta ttactggtcg gcgaaggaga ccatccatga
481 cttcaatacc atgttcaaca actgctatgt ctacaacaag cccggcgagg atgtggtcgt
541 gatggcccag acgctggaga aggtattctt gcagaagatc gagacgatgc ccaaggagga
601 gcttgaactg gagccggcca cggccaaggg tggcaagaag aaggcacgtg ccccggccac
661 gcccaagtct ggatcaggag gcggaggtgg aacgggatca agcacgggtg cagctgtcgc
721 caatagcaac actggcagca gtaacagcgg atctatcaat aaggtagcac catcggccca
781 acagttgccc atcatgggca gcggcctggc ggcacagtca acgggtgcag gaggccatgg
841 atcagcgacg gggtcgggga caacatcccg acccgtatca gcgatgggcg gaacggtttc
901 atcgacggcc ggcggcggcg gtgcaccgtc cataccaccg attagcacaa tgcctccgca
961 cacagtcccc ggcagcacca acaccacgac gacggccacg acaatggtcg acgccattat
1021 agccagcctt cggaatccca gccaggccgc atatccgggc gctacccagg cggcggctaa
1081 cagctcctcc ctactggacg gcagcagcag tgcggcagca tcggcggcgg caacaacagc
1141 agcggcgacg gcagcagcag cggcagcagc agcagcagcg gcggcggcag cagcagcatc
1201 atcatctggc ggtggagcgg gagctcccgg tacagtcagt acggcgggtg gtgtgacaat
1261 accatccgtc aataccacca ccaatgtgca ctcctcctac gtgaacagca cggcgggcgt
1321 cggagttggt gtggatgcgg ttataccgcc ccaacagccg gcgaaaatga agaagggtgt
1381 caaacggaag gcggacacaa cgacgccgac ggccaatgca tttgagtcgc cctacgccca
1441 aatggactcc aagtcggcca agatagcgac gcgaagggaa tcgaatcgtc aggtaaaggg
1501 caaaaaggat cttacattcc agggctcggg atatgcgatg tcgccatcga tgggtgtcgt
1561 gcctggattg gcggcgggtg tggccgctag tgtggcggcg gccaagtcaa aggagaagct
1621 gtcggatgca ctaaagtcat gcaacgagat cctcaaggag ctgttcagca agaagcactc
1681 gggctatgcc tggcccttct acaagccggt ggatgcggaa atgctgggcc tccatgacta
1741 ccacgacatc atcaaaaagc ccatggacct gggcaccgtc aagcggaaaa tggacaatcg
1801 ggagtacaag agcgcaccgg agtttgcggc cgatgtgcga ttaatattca ccaactgcta
1861 caagtacaat ccgccagatc atgatgttgt ggccatgggc cggaagctgc aagacgtctt
1921 cgaaatgcgc tacgccaaca tacccgacga accggtctct aatgcggccc atcatcatgc
1981 acatacgcac ggacatgggc acggccatgg acacggccag agtcacggtc acgggcatgg
2041 gcatgggcac ggtggctatt cgagtgcttc cctcaagcac gatggcagcg actcgtccag
2101 cgaggactcc agcggcacag agaacgagtc gaactcggac gaggagcgca gcgccaagct
2161 gaaaatgctc gagtccaagc tgctcggtct ccaggaggag atccgaaagc tctccgagga
2221 ggcctccgca aagaagaagg ccaagaaaaa actcaaagag aagaagaaga gcatcggtgg
2281 gggctctggt tccggctcgg cctctcatca tgcccatgcc tcggctggtg gtggcgcagg
2341 tggtccgtcc gccagccatg gtggcgtctc tgttccggcc agcgtcgttg ccctatcggc
2401 gggcggagca gcgggaccca acctatcggc cttactcagc ggttcgctgg tgggcgcgag
2461 cggagcgggc ggcggagtgc ccaacgtctc ggcccttcat tcactcgccc acgacatgac
2521 ccttgccatg aaccaactga cgggcaatgc ggcagcgacc ggagctggct ttacggccgg
2581 cataccgcca ccgggaccag cgccaggcgg caagggggcc aacatggcca gcgccatggc
2641 tgcggcggga gcgggaccag gggcttctgg gggaaccggc ggcagcagca aatcgaagag
2701 caagggccag cgcggtaaag gaagctcgag caatgcggga gcgggcggag catcctctgg
2761 agtgacggtc aacgcgggca gcggaatcgg cggtgctggc gcagcgtcca gcgctggcag
2821 tggcggtggc agtgggacta ctggccccag cggcaattcc tcaaagcggg gcaagggtag
2881 tagtagtgcc ggcggtggtg gtggcggcag cagtggcagt gcggccaata ccaccagtgc
2941 gaccggtgcc ggagcgcgcg gtagcagcaa gaagaagccc agccaggtga tgaactttga
3001 ctccgaggag gaggacacgg ccaagcccat gtcgtacgat gagaagcgac aactctcact
3061 ggacatcaac aagttgccag gcgacaagct ggggcgagtg gtgcacatta tccagaatcg
3121 ggagccatcg ctgcgggact ccaatccgga cgagatagag atcgactttg agacgctgaa
3181 gccgtcgacg ctgcgcgagc ttgaaagcta tgtggcgtcg tgtttgcgca aaaaaacacg
3241 taagccatgt tataaaaagc cttccggcaa atcgaaggat gagcaaatgg cggaaaagaa
3301 gcaggagctg gagaagcggc tgcaggacgt caccggccag ctgggtgcaa gcaagaaaaa
3361 cgccaagaaa gatgattcca cctcaaacaa agtggaagct gtgcagccag cgaatcccgt
3421 gtcgtcgagt tccagttcca gcgattcatc gtcctcgagt tcgagtgata gcagttcgag
3481 tgactcgagc gacagtgaag caggttagga cgcgttttgt ttgtttgttt taccttataa
3541 cgcctttttt ttttgttagt ttatatagac atatatacgt atgcatatat atatatatat
3601 atatatatat atataaatat gaatatatat gtatagaaac gtttttaagc agcaaataac
3661 aaaatcgaac agatcgacga cagtaaccga cagtaactta cagcttacga aactaaaagc
3721 gtgcggtaga ggaagaggaa tagcaaagca ggtag