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LOCUS XM_041591942 6182 bp mRNA linear INV 14-MAY-2021 (LOC111072429), transcript variant X2, mRNA. ACCESSION XM_041591942 VERSION XM_041591942.1 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6182 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6182 /gene="LOC111072429" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns" /db_xref="GeneID:111072429" CDS 170..6028 /gene="LOC111072429" /codon_start=1 /product="homeotic protein female sterile isoform X2" /protein_id="XP_041447876.1" /db_xref="GeneID:111072429" /translation="MSSNEPPPRYEPPVEPVNGIVQPAVVPPVDRPGRNTNQLQFLIK TVMKMIWKHHFAWPFQQPVDAKKLNLPDYHKIIKQPMDMGTIKKRLENNYYWSAKETI HDFNTMFNNCYVYNKPGEDVVVMAQTLEKVFLQKIETMPKEELELEPATAKGGKKKAR APATPKSGSGGGGGTGSSTGAAVANSNTGSSNSGSINKVAPSAQQLPIMGSGLAAQST GAGGHGSATGSGTTSRPVSAMGGTVSSTAGGGGAPSIPPISTMPPHTVPGSTNTTTTA TTMVDAIIASLRNPSQAAYPGATQAAANSSSLLDGSSSAAASAAATTAAATAAAAAAA AAAAAAAAASSSGGGAGAPGTVSTAGGVTIPSVNTTTNVHSSYVNSTAGVGVGVDAVI PPQQPAKMKKGVKRKADTTTPTANAFESPYAQMDSKSAKIATRRESNRQDLTFQGSGY AMSPSMGVVPGLAAGVAASVAAAKSKEKLSDALKSCNEILKELFSKKHSGYAWPFYKP VDAEMLGLHDYHDIIKKPMDLGTVKRKMDNREYKSAPEFAADVRLIFTNCYKYNPPDH DVVAMGRKLQDVFEMRYANIPDEPVSNAAHHHAHTHGHGHGHGHGQSHGHGHGHGHGG YSSASLKHDGSDSSSEDSSGTENESNSDEERSAKLKMLESKLLGLQEEIRKLSEEASA KKKAKKKLKEKKKSIGGGSGSGSASHHAHASAGGGAGGPSASHGGVSVPASVVALSAG GAAGPNLSALLSGSLVGASGAGGGVPNVSALHSLAHDMTLAMNQLTGNAAATGAGFTA GIPPPGPAPGGKGANMASAMAAAGAGPGASGGTGGSSKSKSKGQRGKGSSSNAGAGGA SSGVTVNAGSGIGGAGAASSAGSGGGSGTTGPSGNSSKRGKGSSSAGGGGGGSSGSAA NTTSATGAGARGSSKKKPSQVMNFDSEEEDTAKPMSYDEKRQLSLDINKLPGDKLGRV VHIIQNREPSLRDSNPDEIEIDFETLKPSTLRELESYVASCLRKKTHKKPSGKSKDEQ MAEKKQELEKRLQDVTGQLGASKKNAKKDDSTSNKVEAVQPANPVSSSSSSSDSSSSS SSDSSSSDSSDSEAGDGDERPPRKKKPRDSNGSNVNNPSLSVVLGGTLPSGGLTPTLL HMGLDHVLNANSPTSQMANLLGNPNPLTAAAMLNNNNKTTLQVGGSFGGASAGGNNSM LHGQVGATAHHKNGQNDHLMTSKMPPGGGAAGAASLPPHSYAGSVPTQAASLGGGGIR IASNLHKQPNLPGGDLVENNAALTAALTSTVNSNSGSGAGVGVAAGLSNTSSGTASGH THNTNTMGGQGDGLPGASLASGLKQIPQFDDPVEQSLASLEFSAAAASTGKSGLTDNF LMAQQGHLMQQPGLQQQPPFGHHQQQQQQQQQQQHHPMDYMTELLTKGTENVPGMNGN LLNFNLDMAAAAAYQQKQHHGQHTQQQQQQQQQQQQQQQQQQASHNNGFNVADFGMPG FDNLTATAFLDLEHTLQQQHMQLQQQQQQQQQHHHQQQSLQQLHAHQQQLANKMLLIK PIESMMPSPPDKLKVMLKVSQSPSDLKLHSSQAAAAQSMLAQSFKAAEQNLKNASSWS SLASASSPQNTSSSSSSSKPKPAMDSFQQFRNKAKERDRLKLLEAAEKEKKHQKEAAE KEQQRKHHKSSSSSSAAQAASSTNISTGNAPQSGAGQISSDRERSSSAVDATRMGSGG GGNGGLLLPGNGNNSSNSANSNGPGSAGSGSGGPVSGGLASGGGPNSGGCIIGPLANT GSNSNSGVGSGATSSNSNSSVGGVVGSGGPGSNSQGSSGGGGTMGSGLLEYGPQVVVL TQAAANAQAQHVSTTMTAQTVLASSPLEAMESGRKSVHDTQSQISRVEDIKASPGQGQ SSPAQQSPQDRAAAKRAEQRRAEQERRRREALAGQIDMNMQSDLMAAFEETL" misc_feature 269..589 /gene="LOC111072429" /note="Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino...; Region: Bromo_Brdt_I_like; cd05497" /db_xref="CDD:99929" misc_feature order(356..358,377..379,386..388,503..505,515..517, 533..535) /gene="LOC111072429" /note="acetyllysine binding site [active]" /db_xref="CDD:99929" misc_feature 1616..1918 /gene="LOC111072429" /note="Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino...; Region: Bromo_Brdt_II_like; cd05498" /db_xref="CDD:99930" misc_feature order(1694..1696,1715..1717,1724..1726,1841..1843, 1853..1855,1871..1873) /gene="LOC111072429" /note="acetyllysine binding site [active]" /db_xref="CDD:99930" misc_feature 3011..3205 /gene="LOC111072429" /note="Bromodomain extra-terminal - transcription regulation; Region: BET; pfam17035" /db_xref="CDD:435704" misc_feature <5963..6025 /gene="LOC111072429" /note="C-terminal domain of bromodomain protein 4; Region: BRD4_CDT; pfam17105" /db_xref="CDD:465349" ORIGIN 1 agcagcagca gcagtacaac cagcatccac ttgaggatca gataccttaa aagcaaccgc 61 aacaggagca gggacaaaag caacaaccag aagcctcatc atcagccaac aggaggagca 121 gcagtagccg cagcaccact gtgtcaccat catcaccatc atcaacaaca tgtcgtccaa 181 cgaaccacca cctcgctacg agccgcctgt ggagccggtc aatggcattg tgcagccagc 241 ggttgtgcct ccagttgatc gacccggccg caatacaaat caattgcaat tcttgatcaa 301 aaccgtaatg aagatgatat ggaaacacca ttttgcgtgg cccttccagc agcccgtcga 361 cgcgaaaaag ctcaacctgc ccgactacca caagatcatc aagcagccga tggacatggg 421 aacgatcaag aagcgactgg agaacaacta ttactggtcg gcgaaggaga ccatccatga 481 cttcaatacc atgttcaaca actgctatgt ctacaacaag cccggcgagg atgtggtcgt 541 gatggcccag acgctggaga aggtattctt gcagaagatc gagacgatgc ccaaggagga 601 gcttgaactg gagccggcca cggccaaggg tggcaagaag aaggcacgtg ccccggccac 661 gcccaagtct ggatcaggag gcggaggtgg aacgggatca agcacgggtg cagctgtcgc 721 caatagcaac actggcagca gtaacagcgg atctatcaat aaggtagcac catcggccca 781 acagttgccc atcatgggca gcggcctggc ggcacagtca acgggtgcag gaggccatgg 841 atcagcgacg gggtcgggga caacatcccg acccgtatca gcgatgggcg gaacggtttc 901 atcgacggcc ggcggcggcg gtgcaccgtc cataccaccg attagcacaa tgcctccgca 961 cacagtcccc ggcagcacca acaccacgac gacggccacg acaatggtcg acgccattat 1021 agccagcctt cggaatccca gccaggccgc atatccgggc gctacccagg cggcggctaa 1081 cagctcctcc ctactggacg gcagcagcag tgcggcagca tcggcggcgg caacaacagc 1141 agcggcgacg gcagcagcag cggcagcagc agcagcagcg gcggcggcag cagcagcatc 1201 atcatctggc ggtggagcgg gagctcccgg tacagtcagt acggcgggtg gtgtgacaat 1261 accatccgtc aataccacca ccaatgtgca ctcctcctac gtgaacagca cggcgggcgt 1321 cggagttggt gtggatgcgg ttataccgcc ccaacagccg gcgaaaatga agaagggtgt 1381 caaacggaag gcggacacaa cgacgccgac ggccaatgca tttgagtcgc cctacgccca 1441 aatggactcc aagtcggcca agatagcgac gcgaagggaa tcgaatcgtc aggatcttac 1501 attccagggc tcgggatatg cgatgtcgcc atcgatgggt gtcgtgcctg gattggcggc 1561 gggtgtggcc gctagtgtgg cggcggccaa gtcaaaggag aagctgtcgg atgcactaaa 1621 gtcatgcaac gagatcctca aggagctgtt cagcaagaag cactcgggct atgcctggcc 1681 cttctacaag ccggtggatg cggaaatgct gggcctccat gactaccacg acatcatcaa 1741 aaagcccatg gacctgggca ccgtcaagcg gaaaatggac aatcgggagt acaagagcgc 1801 accggagttt gcggccgatg tgcgattaat attcaccaac tgctacaagt acaatccgcc 1861 agatcatgat gttgtggcca tgggccggaa gctgcaagac gtcttcgaaa tgcgctacgc 1921 caacataccc gacgaaccgg tctctaatgc ggcccatcat catgcacata cgcacggaca 1981 tgggcacggc catggacacg gccagagtca cggtcacggg catgggcatg ggcacggtgg 2041 ctattcgagt gcttccctca agcacgatgg cagcgactcg tccagcgagg actccagcgg 2101 cacagagaac gagtcgaact cggacgagga gcgcagcgcc aagctgaaaa tgctcgagtc 2161 caagctgctc ggtctccagg aggagatccg aaagctctcc gaggaggcct ccgcaaagaa 2221 gaaggccaag aaaaaactca aagagaagaa gaagagcatc ggtgggggct ctggttccgg 2281 ctcggcctct catcatgccc atgcctcggc tggtggtggc gcaggtggtc cgtccgccag 2341 ccatggtggc gtctctgttc cggccagcgt cgttgcccta tcggcgggcg gagcagcggg 2401 acccaaccta tcggccttac tcagcggttc gctggtgggc gcgagcggag cgggcggcgg 2461 agtgcccaac gtctcggccc ttcattcact cgcccacgac atgacccttg ccatgaacca 2521 actgacgggc aatgcggcag cgaccggagc tggctttacg gccggcatac cgccaccggg 2581 accagcgcca ggcggcaagg gggccaacat ggccagcgcc atggctgcgg cgggagcggg 2641 accaggggct tctgggggaa ccggcggcag cagcaaatcg aagagcaagg gccagcgcgg 2701 taaaggaagc tcgagcaatg cgggagcggg cggagcatcc tctggagtga cggtcaacgc 2761 gggcagcgga atcggcggtg ctggcgcagc gtccagcgct ggcagtggcg gtggcagtgg 2821 gactactggc cccagcggca attcctcaaa gcggggcaag ggtagtagta gtgccggcgg 2881 tggtggtggc ggcagcagtg gcagtgcggc caataccacc agtgcgaccg gtgccggagc 2941 gcgcggtagc agcaagaaga agcccagcca ggtgatgaac tttgactccg aggaggagga 3001 cacggccaag cccatgtcgt acgatgagaa gcgacaactc tcactggaca tcaacaagtt 3061 gccaggcgac aagctggggc gagtggtgca cattatccag aatcgggagc catcgctgcg 3121 ggactccaat ccggacgaga tagagatcga ctttgagacg ctgaagccgt cgacgctgcg 3181 cgagcttgaa agctatgtgg cgtcgtgttt gcgcaaaaaa acacataaaa agccttccgg 3241 caaatcgaag gatgagcaaa tggcggaaaa gaagcaggag ctggagaagc ggctgcagga 3301 cgtcaccggc cagctgggtg caagcaagaa aaacgccaag aaagatgatt ccacctcaaa 3361 caaagtggaa gctgtgcagc cagcgaatcc cgtgtcgtcg agttccagtt ccagcgattc 3421 atcgtcctcg agttcgagtg atagcagttc gagtgactcg agcgacagtg aagcaggtga 3481 tggagacgaa cgacctccgc gcaaaaagaa gccacgcgac tcgaatggca gcaatgtaaa 3541 taatcccagc ctcagcgttg ttttgggagg aaccctgccg agtggcggct tgacgccgac 3601 gctccttcac atgggcctgg accacgtgct caacgcaaac tcacccacat cacaaatggc 3661 caatctgttg ggcaatccga atcccttgac ggcggctgcc atgctgaaca ataacaacaa 3721 gacgacgttg caggtcggcg gcagcttcgg cggcgcctcc gcgggcggca acaacagcat 3781 gctgcacggc caggttggcg caacggcgca ccacaagaac ggacaaaacg accacctaat 3841 gactagcaaa atgccgcctg gcggtggggc tgccggagcc gcttccctgc cgccccacag 3901 ctatgccggt agcgtgccca cccaggccgc aagtctgggc ggagggggca tacggatagc 3961 cagtaatctg cacaagcaac ccaatctgcc cggcggcgac ctggtcgaga ataacgcggc 4021 gctgaccgct gctttgacgt cgaccgtcaa cagcaacagc ggcagcggcg ctggtgtggg 4081 agtggccgcc ggcctgagca acaccagcag tggcaccgcc tcgggccaca cacacaacac 4141 caacacaatg ggtggccagg gggatggctt gccgggtgcc tcgctggcat cgggcctcaa 4201 gcaaatcccg cagttcgacg atcccgttga gcagtcgctg gcctccctgg agttcagtgc 4261 ggcagcggcc tccacgggca agtcgggctt aaccgataac tttttgatgg cccagcaggg 4321 acacctaatg cagcaacctg gtctgcagca gcagccgccc tttggacacc accaacagca 4381 gcagcaacag cagcaacagc agcagcacca ccctatggac tacatgacgg aactgttgac 4441 aaagggtaca gagaacgtgc ccggtatgaa cggaaacctt ttgaacttca acctcgacat 4501 ggcggctgcg gcggcctacc aacagaagca gcaccatggc cagcacaccc agcagcagca 4561 gcagcaacaa cagcagcagc agcagcaaca gcagcagcaa caggcgtcgc acaacaatgg 4621 cttcaatgtg gcggactttg gcatgccagg attcgataat ctgactgcaa cagcattcct 4681 cgacctggag cacacactcc agcagcagca catgcagctg caacagcagc agcagcaaca 4741 gcaacaacac caccaccaac agcagtccct tcagcagctg catgcccacc agcagcagct 4801 ggccaacaaa atgctcctca tcaaaccgat cgagtcgatg atgcccagtc cgccggacaa 4861 gctgaaggta atgctgaagg tatcccaatc gccctccgac ctgaagctgc actcaagcca 4921 ggcggcggcc gcccagagta tgctggctca atccttcaag gcggccgagc agaacctgaa 4981 gaatgccagc tcgtggtcat cgctggcatc agccagctca ccgcagaaca cttcgagcag 5041 ttcgagcagc agcaagccca agccggcgat ggactcattc cagcaattcc gcaacaaagc 5101 caaagaacgc gaccgcctca agctgttgga ggcggccgag aaggagaaga agcatcaaaa 5161 ggaggctgcc gagaaggagc agcagcgcaa gcatcacaag tcatcctcgt cctcatccgc 5221 cgcacaggca gcctcctcaa caaacatctc caccggaaat gcgcctcagt ctggggcagg 5281 acagataagc agtgataggg aaaggtccag cagcgctgtg gatgccaccc gcatgggcag 5341 cggtgggggc ggcaacggcg gtctactcct acccggcaat ggcaacaaca gcagcaactc 5401 tgccaacagc aacggacccg gcagcgcggg tagcggcagt gggggccccg tcagtggtgg 5461 cctagccagt ggcggcggac ccaacagtgg cggctgcatc atcggaccat tggcaaatac 5521 aggcagcaac agcaacagcg gcgttggcag cggggccaca agcagcaaca gcaatagcag 5581 tgtgggcgga gtggtcggga gcggggggcc cggctcaaat agccaaggca gtagcggtgg 5641 gggcgggacg atgggaagcg gactcctaga atacggcccg caggtggtgg tcctcactca 5701 ggcggcggcg aatgcccagg cccagcacgt atcgactaca atgacggcgc agaccgtcct 5761 ggcttcctcg cccctggagg ccatggagag tggcaggaaa agcgtgcatg acacccagtc 5821 ccagatatcg cgtgtcgagg acatcaaggc atcgcccggc cagggccaga gttcgccggc 5881 acagcaatcg ccgcaagatc gggcagcggc caagcgtgcg gagcaacgaa gagcggagca 5941 ggagagacgc agacgcgaag cgttggctgg ccaaatcgac atgaacatgc agagtgatct 6001 aatggcagcg tttgaggaga cgttgtagga caaggccttc ggaggacagc aacggacata 6061 tacgcatccc agaaccagca tcctcattgc tgctccgaga atgccgtcgt cgctttcaaa 6121 gcggcgggcg gcgaggacgc caaagcctct gccaacacag acaacaatgg agagcagcac 6181 ca